More than 300 homologs were found in PanDaTox collection
for query gene Plav_0506 on replicon NC_009719
Organism: Parvibaculum lavamentivorans DS-1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009719  Plav_0506  histone family protein DNA-binding protein  100 
 
 		 113 aa  216  7e-56  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  0.424528 
 
 
-
 
NC_007406  Nwi_1892  histone-like DNA-binding protein  67.35 
 
 		 99 aa  126  9.000000000000001e-29  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.127774  normal  0.803766 
 
 
-
 
NC_007964  Nham_2223  histone-like DNA-binding protein  67.35 
 
 		 99 aa  125  1.0000000000000001e-28  Nitrobacter hamburgensis X14  Bacteria  normal  0.167078  n/a   
 
 
-
 
NC_010580  Bind_3873  histone family protein DNA-binding protein  54.95 
 
 		 114 aa  122  1e-27  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.282183  normal  0.344124 
 
 
-
 
NC_011004  Rpal_3302  histone family protein DNA-binding protein  62.63 
 
 		 103 aa  121  3e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007958  RPD_2889  histone-like DNA-binding protein  63.44 
 
 		 103 aa  116  9e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.181903 
 
 
-
 
NC_007778  RPB_2570  histone-like DNA-binding protein  63.44 
 
 		 103 aa  116  9.999999999999999e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.153963  normal  0.195487 
 
 
-
 
NC_007925  RPC_2397  histone-like DNA-binding protein  65.52 
 
 		 104 aa  115  1.9999999999999998e-25  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.806116  normal  0.0757875 
 
 
-
 
NC_011312  VSAL_I0822  DNA-binding protein HU-beta  50 
 
 		 98 aa  82.4  0.000000000000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.172487  n/a   
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  48.84 
 
 		 90 aa  82.4  0.000000000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal  1 
 
 
-
 
NC_009674  Bcer98_2403  histone family protein DNA-binding protein  47.67 
 
 		 90 aa  81.3  0.000000000000005  Bacillus cytotoxicus NVH 391-98  Bacteria  unclonable  0.00000000237544  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3494  histone family protein DNA-binding protein  46.51 
 
 		 90 aa  79.7  0.00000000000001  Bacillus weihenstephanensis KBAB4  Bacteria  decreased coverage  0.00000668206  n/a   
 
 
-
 
NC_011772  BCG9842_B1474  DNA-binding protein HU  46.51 
 
 		 90 aa  79  0.00000000000002  Bacillus cereus G9842  Bacteria  unclonable  0.000000000112809  hitchhiker  0.00000484208 
 
 
-
 
NC_003909  BCE_3756  DNA-binding protein HU  46.51 
 
 		 90 aa  79  0.00000000000002  Bacillus cereus ATCC 10987  Bacteria  unclonable  0.0000000000231467  n/a   
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  47.67 
 
 		 90 aa  79  0.00000000000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011658  BCAH187_A3778  DNA-binding protein HU  46.51 
 
 		 90 aa  79  0.00000000000002  Bacillus cereus AH187  Bacteria  unclonable  0.000000000704337  n/a   
 
 
-
 
NC_005945  BAS3574  DNA-binding protein HU  46.51 
 
 		 90 aa  79  0.00000000000002  Bacillus anthracis str. Sterne  Bacteria  decreased coverage  0.0000000000204463  n/a   
 
 
-
 
NC_005957  BT9727_3473  DNA-binding protein HU  46.51 
 
 		 90 aa  79  0.00000000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  1.59147e-20  n/a   
 
 
-
 
NC_006274  BCZK3486  DNA-binding protein HU  46.51 
 
 		 90 aa  79  0.00000000000002  Bacillus cereus E33L  Bacteria  unclonable  0.000000000000148823  n/a   
 
 
-
 
NC_009997  Sbal195_1630  histone family protein DNA-binding protein  47.67 
 
 		 90 aa  79  0.00000000000002  Shewanella baltica OS195  Bacteria  unclonable  0.0000000159632  normal  1 
 
 
-
 
NC_009052  Sbal_1607  histone family protein DNA-binding protein  47.67 
 
 		 90 aa  79  0.00000000000002  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000000022491  n/a   
 
 
-
 
NC_007530  GBAA_3858  DNA-binding protein HU  46.51 
 
 		 90 aa  79  0.00000000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  unclonable  0.0000000000000587043  n/a   
 
 
-
 
NC_011725  BCB4264_A3827  DNA-binding protein HU  46.51 
 
 		 90 aa  79  0.00000000000002  Bacillus cereus B4264  Bacteria  unclonable  0.00000818253  n/a   
 
 
-
 
NC_009438  Sputcn32_1493  histone family protein DNA-binding protein  47.67 
 
 		 90 aa  79  0.00000000000002  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000000388309  n/a   
 
 
-
 
NC_011773  BCAH820_3740  DNA-binding protein HU  46.51 
 
 		 90 aa  79  0.00000000000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000145695 
 
 
-
 
NC_008321  Shewmr4_2492  histone family protein DNA-binding protein  47.67 
 
 		 90 aa  79  0.00000000000002  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000348442  normal  0.0842071 
 
 
-
 
NC_008322  Shewmr7_2560  histone family protein DNA-binding protein  47.67 
 
 		 90 aa  79  0.00000000000002  Shewanella sp. MR-7  Bacteria  unclonable  0.000000135506  normal  0.0536414 
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  47.67 
 
 		 90 aa  79  0.00000000000002  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_011663  Sbal223_2747  histone family protein DNA-binding protein  47.67 
 
 		 90 aa  79  0.00000000000002  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000000276504  normal  0.581764 
 
 
-
 
NC_013093  Amir_0860  histone family protein DNA-binding protein  47.67 
 
 		 90 aa  78.6  0.00000000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0124999  n/a   
 
 
-
 
NC_008577  Shewana3_2658  histone family protein DNA-binding protein  46.51 
 
 		 90 aa  77.8  0.00000000000005  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000180426  normal  0.730265 
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  45.35 
 
 		 90 aa  77  0.00000000000007  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_010506  Swoo_3110  histone family protein DNA-binding protein  46.51 
 
 		 90 aa  77  0.00000000000008  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000105676  hitchhiker  0.00000299463 
 
 
-
 
NC_009719  Plav_3229  histone family protein DNA-binding protein  46.51 
 
 		 91 aa  76.6  0.0000000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009674  Bcer98_1763  histone family protein DNA-binding protein  44.19 
 
 		 90 aa  76.6  0.0000000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.203917  n/a   
 
 
-
 
NC_008752  Aave_1666  histone family protein DNA-binding protein  51.16 
 
 		 90 aa  76.6  0.0000000000001  Acidovorax citrulli AAC00-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008527  LACR_0525  nucleoid protein Hbs  50 
 
 		 91 aa  76.3  0.0000000000001  Lactococcus lactis subsp. cremoris SK11  Bacteria  decreased coverage  0.00046461  n/a   
 
 
-
 
NC_003909  BCE_2407  DNA-binding protein HU  43.02 
 
 		 90 aa  75.5  0.0000000000002  Bacillus cereus ATCC 10987  Bacteria  normal  0.020348  n/a   
 
 
-
 
NC_011725  BCB4264_A2342  DNA-binding protein HU  43.02 
 
 		 90 aa  75.9  0.0000000000002  Bacillus cereus B4264  Bacteria  normal  0.868034  n/a   
 
 
-
 
NC_005945  BAS2213  DNA-binding protein HU  43.02 
 
 		 90 aa  75.5  0.0000000000002  Bacillus anthracis str. Sterne  Bacteria  normal  0.519209  n/a   
 
 
-
 
NC_005957  BT9727_2152  DNA-binding protein HU  43.02 
 
 		 90 aa  75.5  0.0000000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0274093  n/a   
 
 
-
 
NC_006274  BCZK2136  DNA-binding protein HU  43.02 
 
 		 90 aa  75.5  0.0000000000002  Bacillus cereus E33L  Bacteria  normal  1  n/a   
 
 
-
 
NC_007530  GBAA_2377  DNA-binding protein HU  43.02 
 
 		 90 aa  75.5  0.0000000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  1  n/a   
 
 
-
 
NC_007954  Sden_2492  histone-like DNA-binding protein  45.35 
 
 		 90 aa  75.9  0.0000000000002  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00401844  n/a   
 
 
-
 
NC_011773  BCAH820_2395  DNA-binding protein HU  43.02 
 
 		 90 aa  75.5  0.0000000000002  Bacillus cereus AH820  Bacteria  n/a    normal  1 
 
 
-
 
NC_011772  BCG9842_B2983  DNA-binding protein HU  43.02 
 
 		 90 aa  75.9  0.0000000000002  Bacillus cereus G9842  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010002  Daci_2879  histone family protein DNA-binding protein  51.16 
 
 		 90 aa  75.9  0.0000000000002  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011658  BCAH187_A2477  DNA-binding protein HU  43.02 
 
 		 90 aa  75.5  0.0000000000002  Bacillus cereus AH187  Bacteria  normal  1  n/a   
 
 
-
 
NC_009831  Ssed_1544  histone family protein DNA-binding protein  45.35 
 
 		 90 aa  74.7  0.0000000000003  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.000000007734  hitchhiker  0.000745392 
 
 
-
 
NC_011661  Dtur_1514  histone family protein DNA-binding protein  45.35 
 
 		 91 aa  75.1  0.0000000000003  Dictyoglomus turgidum DSM 6724  Bacteria  decreased coverage  0.0000108882  n/a   
 
 
-
 
NC_003909  BCE_1637  DNA-binding protein HU  48.84 
 
 		 90 aa  75.1  0.0000000000003  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.00420342  n/a   
 
 
-
 
NC_005945  BAS1420  DNA-binding protein HU  48.84 
 
 		 90 aa  75.1  0.0000000000003  Bacillus anthracis str. Sterne  Bacteria  normal  0.190218  n/a   
 
 
-
 
NC_005957  BT9727_1392  DNA-binding protein HU  48.84 
 
 		 90 aa  75.1  0.0000000000003  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.011833  n/a   
 
 
-
 
NC_009092  Shew_2505  histone family protein DNA-binding protein  45.35 
 
 		 90 aa  75.1  0.0000000000003  Shewanella loihica PV-4  Bacteria  hitchhiker  0.0000000791734  normal  0.581146 
 
 
-
 
NC_006274  BCZK1392  DNA-binding protein HU  48.84 
 
 		 90 aa  75.1  0.0000000000003  Bacillus cereus E33L  Bacteria  decreased coverage  0.00000512711  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2184  histone family protein DNA-binding protein  41.86 
 
 		 90 aa  75.5  0.0000000000003  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.170143  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1434  histone family protein DNA-binding protein  48.84 
 
 		 90 aa  75.1  0.0000000000003  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.087278  n/a   
 
 
-
 
NC_011658  BCAH187_A1673  DNA-binding protein HU  48.84 
 
 		 90 aa  75.1  0.0000000000003  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000325838  n/a   
 
 
-
 
NC_008781  Pnap_1633  histone family protein DNA-binding protein  50 
 
 		 90 aa  75.5  0.0000000000003  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011772  BCG9842_B3779  DNA-binding protein HU  48.84 
 
 		 90 aa  75.1  0.0000000000003  Bacillus cereus G9842  Bacteria  decreased coverage  0.000354145  normal  0.961445 
 
 
-
 
NC_007530  GBAA_1531  DNA-binding protein HU  48.84 
 
 		 90 aa  75.1  0.0000000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.259543  n/a   
 
 
-
 
NC_009674  Bcer98_1233  histone family protein DNA-binding protein  48.84 
 
 		 90 aa  75.1  0.0000000000003  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.0133564  n/a   
 
 
-
 
NC_013456  VEA_004041  DNA-binding protein HU-beta  44.19 
 
 		 90 aa  75.1  0.0000000000003  Vibrio sp. Ex25  Bacteria  unclonable  0.000000015142  n/a   
 
 
-
 
NC_008345  Sfri_2593  histone family protein DNA-binding protein  45.35 
 
 		 91 aa  75.1  0.0000000000003  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.0000000173721  n/a   
 
 
-
 
NC_011773  BCAH820_1604  DNA-binding protein HU  48.84 
 
 		 90 aa  75.1  0.0000000000003  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000159132 
 
 
-
 
NC_011725  BCB4264_A1566  DNA-binding protein HU  48.84 
 
 		 90 aa  75.1  0.0000000000003  Bacillus cereus B4264  Bacteria  normal  0.236067  n/a   
 
 
-
 
NC_009901  Spea_2678  histone family protein DNA-binding protein  45.35 
 
 		 90 aa  74.7  0.0000000000004  Shewanella pealeana ATCC 700345  Bacteria  unclonable  0.0000000000589622  n/a   
 
 
-
 
NC_012793  GWCH70_2154  histone family protein DNA-binding protein  48.84 
 
 		 90 aa  74.7  0.0000000000004  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000000552537  n/a   
 
 
-
 
NC_009012  Cthe_2657  nucleoid protein Hbs  47.67 
 
 		 91 aa  74.7  0.0000000000004  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.000194133  n/a   
 
 
-
 
NC_010718  Nther_0070  nucleoid protein Hbs  41.86 
 
 		 92 aa  74.7  0.0000000000004  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.0240129  normal  1 
 
 
-
 
NC_008700  Sama_1227  HU family DNA-binding protein  45.35 
 
 		 90 aa  74.3  0.0000000000005  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000165625  normal  1 
 
 
-
 
NC_010524  Lcho_1929  histone family protein DNA-binding protein  50 
 
 		 116 aa  74.3  0.0000000000005  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0431821 
 
 
-
 
NC_012034  Athe_0648  histone family protein DNA-binding protein  46.51 
 
 		 91 aa  74.3  0.0000000000005  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.0000000000417185  n/a   
 
 
-
 
NC_008786  Veis_2697  histone family protein DNA-binding protein  49.44 
 
 		 105 aa  73.9  0.0000000000006  Verminephrobacter eiseniae EF01-2  Bacteria  normal  1  normal  0.651283 
 
 
-
 
NC_010320  Teth514_0687  histone family protein DNA-binding protein  47.62 
 
 		 91 aa  73.9  0.0000000000006  Thermoanaerobacter sp. X514  Bacteria  normal  0.105584  n/a   
 
 
-
 
NC_010424  Daud_0075  histone family protein DNA-binding protein  44.19 
 
 		 91 aa  73.9  0.0000000000007  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  1  n/a   
 
 
-
 
NC_013411  GYMC61_0465  histone family protein DNA-binding protein  47.67 
 
 		 90 aa  73.9  0.0000000000007  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008709  Ping_1468  DNA-binding protein HU beta subunit  46.51 
 
 		 91 aa  73.9  0.0000000000007  Psychromonas ingrahamii 37  Bacteria  normal  0.961834  normal  0.643607 
 
 
-
 
NC_007948  Bpro_3065  nucleoid protein Hbs  50 
 
 		 90 aa  73.9  0.0000000000007  Polaromonas sp. JS666  Bacteria  normal  0.135138  normal  0.394857 
 
 
-
 
NC_008789  Hhal_0600  histone family protein DNA-binding protein  48.84 
 
 		 90 aa  73.6  0.0000000000008  Halorhodospira halophila SL1  Bacteria  normal  0.0791658  n/a   
 
 
-
 
NC_012560  Avin_43920  histone-like DNA-binding protein  44.19 
 
 		 90 aa  73.9  0.0000000000008  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_012791  Vapar_1789  histone family protein DNA-binding protein  50 
 
 		 90 aa  73.6  0.0000000000009  Variovorax paradoxus S110  Bacteria  normal  0.970942  n/a   
 
 
-
 
NC_013421  Pecwa_3261  transcriptional regulator HU subunit beta  45.35 
 
 		 90 aa  73.2  0.000000000001  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
-
 
NC_008782  Ajs_2621  histone family protein DNA-binding protein  50 
 
 		 90 aa  73.2  0.000000000001  Acidovorax sp. JS42  Bacteria  normal  0.348082  normal  0.0833374 
 
 
-
 
NC_010717  PXO_02474  DNA-binding protein HU  47.67 
 
 		 90 aa  73.2  0.000000000001  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_011992  Dtpsy_1187  histone family protein DNA-binding protein  50 
 
 		 90 aa  73.2  0.000000000001  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_012917  PC1_1051  transcriptional regulator HU subunit beta  45.35 
 
 		 90 aa  73.2  0.000000000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.593082  n/a   
 
 
-
 
NC_009632  SaurJH1_1560  histone family protein DNA-binding protein  47.67 
 
 		 90 aa  72  0.000000000002  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.768925  n/a   
 
 
-
 
NC_002976  SERP1041  DNA-binding protein HU  47.67 
 
 		 90 aa  72  0.000000000002  Staphylococcus epidermidis RP62A  Bacteria  normal  0.436255  n/a   
 
 
-
 
NC_013385  Adeg_2069  histone family protein DNA-binding protein  44.19 
 
 		 95 aa  72.4  0.000000000002  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_007404  Tbd_1674  histone-like DNA-binding protein  51.16 
 
 		 90 aa  72.4  0.000000000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  0.171237 
 
 
-
 
NC_011071  Smal_0839  histone family protein DNA-binding protein  46.51 
 
 		 90 aa  72.4  0.000000000002  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0237084  normal  1 
 
 
-
 
NC_008825  Mpe_A1956  nucleoid protein Hbs  48.84 
 
 		 90 aa  72.4  0.000000000002  Methylibium petroleiphilum PM1  Bacteria  normal  0.582961  normal  0.45981 
 
 
-
 
NC_007644  Moth_0085  nucleoid protein Hbs  44.05 
 
 		 91 aa  72  0.000000000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0539634  normal  1 
 
 
-
 
NC_009487  SaurJH9_1530  histone family protein DNA-binding protein  47.67 
 
 		 90 aa  72  0.000000000002  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.277737  n/a   
 
 
-
 
NC_008228  Patl_3133  histone-like DNA-binding protein  44.19 
 
 		 90 aa  72.8  0.000000000002  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.0000000045924  n/a   
 
 
-
 
NC_009457  VC0395_A1509  DNA-binding protein HU-beta  43.02 
 
 		 90 aa  72  0.000000000002  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000000490467  n/a   
 
 
-
 
NC_008740  Maqu_1837  histone family protein DNA-binding protein  47.67 
 
 		 90 aa  72.4  0.000000000002  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00431989  n/a   
 
 
-
 
NC_007908  Rfer_2248  histone-like DNA-binding protein  49.44 
 
 		 112 aa  72  0.000000000003  Rhodoferax ferrireducens T118  Bacteria  normal  0.117837  n/a   
 
 
-
 
NC_008530  LGAS_0894  nucleoid DNA-binding protein  47.78 
 
 		 91 aa  72  0.000000000003  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  8.08972e-16  hitchhiker  0.000000000000265027 
 
 
-
 
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