More than 300 homologs were found in PanDaTox collection
for query gene Ping_1112 on replicon NC_008709
Organism: Psychromonas ingrahamii 37



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
CP001509  ECD_02160  ribonucleotide-diphosphate reductase alpha subunit  77.79 
 
 
761 aa  1256    Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_010158  YpAngola_0034  putative ribonucleoside-diphosphate reductase, alpha subunit  64.48 
 
 
548 aa  682    Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_2801  ribonucleotide-diphosphate reductase subunit alpha  77.79 
 
 
761 aa  1254    Enterobacter sp. 638  Bacteria  normal  0.768732  normal  0.31743 
 
 
-
 
CP001637  EcDH1_1425  ribonucleoside-diphosphate reductase, alpha subunit  77.79 
 
 
761 aa  1256    Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02125  ribonucleotide-diphosphate reductase subunit alpha  75.55 
 
 
773 aa  1243    Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.117976  n/a   
 
 
-
 
NC_003910  CPS_2328  ribonucleotide-diphosphate reductase subunit alpha  77.81 
 
 
756 aa  1254    Colwellia psychrerythraea 34H  Bacteria  normal  0.333669  n/a   
 
 
-
 
NC_009801  EcE24377A_2531  ribonucleotide-diphosphate reductase subunit alpha  77.92 
 
 
761 aa  1257    Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2073  ribonucleotide-diphosphate reductase subunit alpha  78.08 
 
 
762 aa  1249    Shewanella putrefaciens CN-32  Bacteria  normal  0.0110634  n/a   
 
 
-
 
NC_010658  SbBS512_E2614  ribonucleotide-diphosphate reductase subunit alpha  77.79 
 
 
761 aa  1255    Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2415  ribonucleotide-diphosphate reductase subunit alpha  77.82 
 
 
762 aa  1244    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011080  SNSL254_A2462  ribonucleotide-diphosphate reductase subunit alpha  78.51 
 
 
761 aa  1261    Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.059403 
 
 
-
 
NC_012917  PC1_1103  ribonucleotide-diphosphate reductase subunit alpha  79.37 
 
 
761 aa  1273    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.649141  n/a   
 
 
-
 
NC_007204  Psyc_1263  ribonucleotide-diphosphate reductase subunit alpha  75.5 
 
 
758 aa  1214    Psychrobacter arcticus 273-4  Bacteria  normal  0.863588  normal 
 
 
-
 
NC_013421  Pecwa_3213  ribonucleotide-diphosphate reductase subunit alpha  79.37 
 
 
761 aa  1271    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1417  ribonucleotide-diphosphate reductase subunit alpha  77.79 
 
 
761 aa  1256    Escherichia coli ATCC 8739  Bacteria  normal  normal  0.0448641 
 
 
-
 
NC_011663  Sbal223_2055  ribonucleotide-diphosphate reductase subunit alpha  77.43 
 
 
762 aa  1237    Shewanella baltica OS223  Bacteria  normal  0.574862  unclonable  0.00000000000417711 
 
 
-
 
NC_009901  Spea_2064  ribonucleotide-diphosphate reductase subunit alpha  77.03 
 
 
762 aa  1239    Shewanella pealeana ATCC 700345  Bacteria  normal  0.709701  n/a   
 
 
-
 
NC_012912  Dd1591_3021  ribonucleotide-diphosphate reductase subunit alpha  79.27 
 
 
762 aa  1270    Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_0463  ribonucleotide-diphosphate reductase subunit alpha  73.54 
 
 
760 aa  1162    Thiomicrospira crunogena XCL-2  Bacteria  hitchhiker  0.00000234846  n/a   
 
 
-
 
NC_009524  PsycPRwf_1577  ribonucleotide-diphosphate reductase subunit alpha  74.93 
 
 
758 aa  1201    Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.0106565 
 
 
-
 
NC_009832  Spro_3271  ribonucleotide-diphosphate reductase subunit alpha  79.4 
 
 
762 aa  1278    Serratia proteamaculans 568  Bacteria  normal  0.838311  normal 
 
 
-
 
NC_011083  SeHA_C2517  ribonucleotide-diphosphate reductase subunit alpha  78.24 
 
 
761 aa  1258    Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.299874 
 
 
-
 
NC_009092  Shew_1946  ribonucleotide-diphosphate reductase subunit alpha  76.64 
 
 
762 aa  1233    Shewanella loihica PV-4  Bacteria  normal  0.726077  normal  0.0192635 
 
 
-
 
NC_011205  SeD_A2621  ribonucleotide-diphosphate reductase subunit alpha  78.24 
 
 
780 aa  1257    Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.0895131 
 
 
-
 
NC_011094  SeSA_A2504  ribonucleotide-diphosphate reductase subunit alpha  78.37 
 
 
780 aa  1259    Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1223  ribonucleotide-diphosphate reductase subunit alpha  74.3 
 
 
774 aa  1194    Methylobacillus flagellatus KT  Bacteria  normal  0.4349  normal 
 
 
-
 
NC_010498  EcSMS35_2385  ribonucleotide-diphosphate reductase subunit alpha  77.92 
 
 
761 aa  1257    Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1952  ribonucleotide-diphosphate reductase subunit alpha  76.12 
 
 
762 aa  1228    Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2769  ribonucleotide-diphosphate reductase subunit alpha  79 
 
 
762 aa  1275    Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_1122  ribonucleotide-diphosphate reductase subunit alpha  75.23 
 
 
758 aa  1212    Psychrobacter cryohalolentis K5  Bacteria  normal  0.0415952  normal  0.239593 
 
 
-
 
NC_010159  YpAngola_A1313  ribonucleotide-diphosphate reductase subunit alpha  79 
 
 
762 aa  1275    Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_007984  BCI_0386  ribonucleotide-diphosphate reductase subunit alpha  75.26 
 
 
760 aa  1215    Baumannia cicadellinicola str. Hc (Homalodisca coagulata)  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2303  ribonucleotide-diphosphate reductase subunit alpha  76.77 
 
 
762 aa  1240    Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.00675695 
 
 
-
 
NC_011312  VSAL_I1769  ribonucleotide-diphosphate reductase subunit alpha  76.39 
 
 
758 aa  1207    Aliivibrio salmonicida LFI1238  Bacteria  normal  0.738921  n/a   
 
 
-
 
NC_011149  SeAg_B2413  ribonucleotide-diphosphate reductase subunit alpha  78.24 
 
 
761 aa  1258    Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2996  ribonucleotide-diphosphate reductase subunit alpha  76.49 
 
 
754 aa  1211    Marinomonas sp. MWYL1  Bacteria  normal  0.558234  normal 
 
 
-
 
NC_008228  Patl_2473  ribonucleotide-diphosphate reductase subunit alpha  75.23 
 
 
771 aa  1244    Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_1196  ribonucleotide-diphosphate reductase subunit alpha  78.34 
 
 
756 aa  1220    Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1916  ribonucleotide-diphosphate reductase subunit alpha  78.61 
 
 
762 aa  1257    Shewanella sp. MR-4  Bacteria  normal  0.626262  hitchhiker  0.000000207141 
 
 
-
 
NC_008322  Shewmr7_2062  ribonucleotide-diphosphate reductase subunit alpha  78.48 
 
 
762 aa  1254    Shewanella sp. MR-7  Bacteria  normal  0.0145049  unclonable  0.0000416662 
 
 
-
 
NC_012880  Dd703_1037  ribonucleotide-diphosphate reductase subunit alpha  78.87 
 
 
762 aa  1267    Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2133  ribonucleotide-diphosphate reductase subunit alpha  77.56 
 
 
762 aa  1242    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2306  ribonucleotide-diphosphate reductase subunit alpha  76.38 
 
 
762 aa  1233    Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000160913 
 
 
-
 
NC_009783  VIBHAR_02733  ribonucleotide-diphosphate reductase subunit alpha  75.13 
 
 
760 aa  1236    Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011353  ECH74115_3368  ribonucleotide-diphosphate reductase subunit alpha  77.79 
 
 
761 aa  1254    Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_02119  hypothetical protein  77.79 
 
 
761 aa  1256    Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1969  ribonucleotide-diphosphate reductase subunit alpha  78.61 
 
 
762 aa  1257    Shewanella sp. ANA-3  Bacteria  normal  0.210427  hitchhiker  0.0000566907 
 
 
-
 
NC_009997  Sbal195_2407  ribonucleotide-diphosphate reductase subunit alpha  77.3 
 
 
762 aa  1237    Shewanella baltica OS195  Bacteria  normal  0.0329855  unclonable  0.0000182182 
 
 
-
 
NC_009457  VC0395_A0875  ribonucleotide-diphosphate reductase subunit alpha  76.08 
 
 
761 aa  1245    Vibrio cholerae O395  Bacteria  normal  0.0454664  n/a   
 
 
-
 
NC_008700  Sama_1728  ribonucleotide-diphosphate reductase subunit alpha  76.64 
 
 
782 aa  1236    Shewanella amazonensis SB2B  Bacteria  normal  0.742662  normal  0.011326 
 
 
-
 
NC_009052  Sbal_2059  ribonucleotide-diphosphate reductase subunit alpha  77.43 
 
 
762 aa  1238    Shewanella baltica OS155  Bacteria  normal  0.0564291  n/a   
 
 
-
 
NC_009665  Shew185_2290  ribonucleotide-diphosphate reductase subunit alpha  77.43 
 
 
762 aa  1238    Shewanella baltica OS185  Bacteria  normal  0.0215742  n/a   
 
 
-
 
NC_008709  Ping_1112  ribonucleotide-diphosphate reductase subunit alpha  100 
 
 
757 aa  1576    Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A2374  ribonucleotide-diphosphate reductase subunit alpha  77.79 
 
 
761 aa  1256    Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_2848  ribonucleotide-diphosphate reductase subunit alpha  79 
 
 
762 aa  1275    Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003109  ribonucleotide reductase of class Ia (aerobic) alpha subunit  75.79 
 
 
760 aa  1243    Vibrio sp. Ex25  Bacteria  normal  0.810994  n/a   
 
 
-
 
NC_008599  CFF8240_1820  ribonucleotide-diphosphate reductase subunit alpha  29.74 
 
 
791 aa  348  2e-94  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_1895  ribonucleotide-diphosphate reductase subunit alpha  29.54 
 
 
791 aa  347  3e-94  Campylobacter concisus 13826  Bacteria  normal  0.594858  n/a   
 
 
-
 
NC_013205  Aaci_1599  ribonucleoside-diphosphate reductase, alpha subunit  29.21 
 
 
772 aa  344  4e-93  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.0000761375  n/a   
 
 
-
 
NC_013512  Sdel_0054  ribonucleoside-diphosphate reductase, alpha subunit  29.46 
 
 
788 aa  342  2e-92  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_009715  CCV52592_1122  ribonucleotide-diphosphate reductase subunit alpha  28.5 
 
 
790 aa  340  8e-92  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_2704  ribonucleoside-diphosphate reductase, alpha subunit  31.05 
 
 
771 aa  332  2e-89  Brachyspira murdochii DSM 12563  Bacteria  normal  0.343813  n/a   
 
 
-
 
NC_009714  CHAB381_1730  ribonucleotide-diphosphate reductase subunit alpha  27.93 
 
 
793 aa  325  2e-87  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_012039  Cla_0025  ribonucleotide-diphosphate reductase subunit alpha  27.6 
 
 
791 aa  324  5e-87  Campylobacter lari RM2100  Bacteria  normal  n/a   
 
 
-
 
NC_008787  CJJ81176_0051  ribonucleotide-diphosphate reductase subunit alpha  28 
 
 
789 aa  319  1e-85  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_0026  ribonucleotide-diphosphate reductase subunit alpha  27.88 
 
 
789 aa  318  2e-85  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_003912  CJE0024  ribonucleotide-diphosphate reductase subunit alpha  28 
 
 
789 aa  318  2e-85  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_2096  ribonucleotide-diphosphate reductase subunit alpha  27.11 
 
 
788 aa  315  9.999999999999999e-85  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3223  ribonucleotide-diphosphate reductase subunit alpha  27.89 
 
 
764 aa  302  1e-80  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_1700  ribonucleotide-diphosphate reductase subunit alpha  29.05 
 
 
842 aa  296  1e-78  Anaerococcus prevotii DSM 20548  Bacteria  hitchhiker  0.000192568  n/a   
 
 
-
 
NC_007912  Sde_2458  ribonucleotide-diphosphate reductase subunit alpha  30.11 
 
 
969 aa  290  5.0000000000000004e-77  Saccharophagus degradans 2-40  Bacteria  normal  0.0127946  normal 
 
 
-
 
NC_002967  TDE0341  ribonucleotide-diphosphate reductase subunit alpha  28.35 
 
 
845 aa  288  2e-76  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_4224  ribonucleotide-diphosphate reductase subunit alpha  30.39 
 
 
963 aa  285  2.0000000000000002e-75  Pseudomonas aeruginosa PA7  Bacteria  normal  0.194007  n/a   
 
 
-
 
NC_011726  PCC8801_4301  ribonucleoside-diphosphate reductase, alpha subunit  30.17 
 
 
769 aa  285  2.0000000000000002e-75  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008463  PA14_49460  ribonucleotide-diphosphate reductase subunit alpha  30.39 
 
 
963 aa  285  2.0000000000000002e-75  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.00878086  normal  0.899958 
 
 
-
 
NC_012793  GWCH70_0597  ribonucleotide-diphosphate reductase subunit alpha  28.4 
 
 
761 aa  284  5.000000000000001e-75  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp1738  ribonucleotide-diphosphate reductase subunit alpha  30.52 
 
 
942 aa  283  8.000000000000001e-75  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_4359  ribonucleoside-diphosphate reductase, alpha subunit  29.91 
 
 
769 aa  283  1e-74  Cyanothece sp. PCC 8802  Bacteria  normal  0.746758  normal  0.127314 
 
 
-
 
NC_006369  lpl1738  ribonucleotide-diphosphate reductase subunit alpha  30.23 
 
 
942 aa  281  3e-74  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009439  Pmen_3151  ribonucleotide-diphosphate reductase subunit alpha  29.87 
 
 
968 aa  278  2e-73  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.474699 
 
 
-
 
NC_010117  COXBURSA331_A1736  ribonucleotide-diphosphate reductase subunit alpha  28.84 
 
 
941 aa  278  2e-73  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_0436  ribonucleotide-diphosphate reductase subunit alpha  28.84 
 
 
941 aa  278  2e-73  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_1442  ribonucleoside-diphosphate reductase, alpha subunit  28.23 
 
 
964 aa  277  6e-73  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0668  ribonucleotide-diphosphate reductase subunit alpha  29.04 
 
 
976 aa  275  2.0000000000000002e-72  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.142133  n/a   
 
 
-
 
NC_013501  Rmar_0431  ribonucleoside-diphosphate reductase, alpha subunit  29.77 
 
 
926 aa  275  2.0000000000000002e-72  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3717  ribonucleotide-diphosphate reductase subunit alpha  28.91 
 
 
970 aa  273  9e-72  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0503924 
 
 
-
 
NC_002620  TC0214  ribonucleotide-diphosphate reductase subunit alpha  31.09 
 
 
1047 aa  273  1e-71  Chlamydia muridarum Nigg  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1501  ribonucleotide-diphosphate reductase subunit alpha  30.21 
 
 
973 aa  271  2e-71  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_6359  ribonucleoside-diphosphate reductase, alpha subunit  29 
 
 
826 aa  271  2.9999999999999997e-71  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1671  ribonucleoside-diphosphate reductase, alpha subunit  28.86 
 
 
970 aa  271  2.9999999999999997e-71  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A2468  ribonucleotide-diphosphate reductase subunit alpha  30.4 
 
 
956 aa  271  2.9999999999999997e-71  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.0692505  n/a   
 
 
-
 
NC_011071  Smal_0206  ribonucleoside-diphosphate reductase, alpha subunit  28.42 
 
 
803 aa  271  4e-71  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.959297 
 
 
-
 
NC_008782  Ajs_3632  ribonucleotide-diphosphate reductase subunit alpha  29.72 
 
 
972 aa  271  4e-71  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2942  ribonucleotide-diphosphate reductase subunit alpha  29.72 
 
 
974 aa  271  5e-71  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3347  ribonucleotide-diphosphate reductase subunit alpha  30.86 
 
 
981 aa  270  7e-71  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1107  ribonucleotide-diphosphate reductase subunit alpha  29.85 
 
 
969 aa  270  8.999999999999999e-71  Polaromonas sp. JS666  Bacteria  decreased coverage  0.000104617  normal 
 
 
-
 
NC_013204  Elen_2289  ribonucleotide-diphosphate reductase subunit alpha  28.51 
 
 
845 aa  269  1e-70  Eggerthella lenta DSM 2243  Bacteria  normal  0.172108  normal 
 
 
-
 
NC_008254  Meso_2703  ribonucleotide-diphosphate reductase subunit alpha  27.81 
 
 
954 aa  270  1e-70  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2671  ribonucleotide-diphosphate reductase subunit alpha  26.91 
 
 
743 aa  269  1e-70  Clostridium perfringens ATCC 13124  Bacteria  normal  0.267181  n/a   
 
 
-
 
NC_008262  CPR_2356  ribonucleotide-diphosphate reductase subunit alpha  27.25 
 
 
743 aa  268  2.9999999999999995e-70  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>