More than 300 homologs were found in PanDaTox collection
for query gene Lcho_0903 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010524  Lcho_0903  Crp/FNR family transcriptional regulator  100 
 
 
287 aa  574  1.0000000000000001e-163  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008781  Pnap_0792  CRP/FNR family transcriptional regulator  35.8 
 
 
262 aa  132  6e-30  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.328451  normal 
 
 
-
 
NC_010515  Bcenmc03_4486  Crp/FNR family transcriptional regulator  35.96 
 
 
248 aa  130  3e-29  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1666  transcriptional regulator, Crp/Fnr family  38.02 
 
 
250 aa  130  4.0000000000000003e-29  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0506299  n/a   
 
 
-
 
NC_007948  Bpro_1170  Crp/FNR family transcriptional regulator  36.12 
 
 
274 aa  129  4.0000000000000003e-29  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3149  Crp/FNR family transcriptional regulator  36.56 
 
 
249 aa  129  5.0000000000000004e-29  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_1007  transcriptional regulator, Crp/Fnr family  33.19 
 
 
242 aa  129  6e-29  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0037  Crp/FNR family transcriptional regulator  37.02 
 
 
251 aa  129  7.000000000000001e-29  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1540  Crp/FNR family transcriptional regulator  37.02 
 
 
630 aa  129  7.000000000000001e-29  Burkholderia pseudomallei 1710b  Bacteria  normal  0.18142  n/a   
 
 
-
 
NC_009075  BURPS668_A0051  cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases  37.02 
 
 
251 aa  129  7.000000000000001e-29  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_5008  Crp/FNR family transcriptional regulator  36.56 
 
 
249 aa  129  7.000000000000001e-29  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_1091  CRP/FNR family transcriptional regulator  33.19 
 
 
247 aa  129  7.000000000000001e-29  Acidovorax sp. JS42  Bacteria  normal  0.140321  normal 
 
 
-
 
NC_007650  BTH_II0035  Crp/FNR family transcriptional regulator  37.02 
 
 
251 aa  129  8.000000000000001e-29  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0031  Crp/FNR family transcriptional regulator  37.02 
 
 
251 aa  128  9.000000000000001e-29  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0037  Crp/FNR family transcriptional regulator  37.02 
 
 
251 aa  128  9.000000000000001e-29  Burkholderia mallei NCTC 10247  Bacteria  normal  0.284481  n/a   
 
 
-
 
NC_008784  BMASAVP1_1184  Crp/FNR family transcriptional regulator  37.02 
 
 
251 aa  128  9.000000000000001e-29  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1464  Crp/FNR family transcriptional regulator  37.02 
 
 
251 aa  128  9.000000000000001e-29  Burkholderia mallei NCTC 10229  Bacteria  normal  0.855917  n/a   
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  37.23 
 
 
248 aa  128  1.0000000000000001e-28  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_0787  transcriptional regulator, Crp/Fnr family  36.89 
 
 
243 aa  127  2.0000000000000002e-28  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_5122  Crp/FNR family transcriptional regulator  35.53 
 
 
248 aa  127  2.0000000000000002e-28  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5737  Crp/FNR family transcriptional regulator  35.53 
 
 
248 aa  127  2.0000000000000002e-28  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.188641 
 
 
-
 
NC_008825  Mpe_A2471  transcription factor Fnr  37.57 
 
 
269 aa  126  3e-28  Methylibium petroleiphilum PM1  Bacteria  normal  0.366844  normal  0.0435693 
 
 
-
 
NC_010524  Lcho_2772  Crp/FNR family transcriptional regulator  33.77 
 
 
245 aa  127  3e-28  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00275745 
 
 
-
 
NC_007974  Rmet_4521  Crp/Fnr family transcriptional regulator  34.65 
 
 
257 aa  126  4.0000000000000003e-28  Cupriavidus metallidurans CH34  Bacteria  normal  0.0161618  normal  0.0108643 
 
 
-
 
NC_008752  Aave_1530  Crp/FNR family transcriptional regulator  33.19 
 
 
239 aa  125  7e-28  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1047  cyclic nucleotide-binding: regulatory protein, Crp  32.6 
 
 
247 aa  124  2e-27  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4294  Crp/FNR family transcriptional regulator  37.44 
 
 
272 aa  124  2e-27  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_5297  Crp/FNR family transcriptional regulator  36.17 
 
 
248 aa  124  2e-27  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1987  fumarate/nitrate reduction transcriptional regulator  31.44 
 
 
239 aa  124  3e-27  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_3034  Crp/FNR family transcriptional regulator  36.73 
 
 
269 aa  122  6e-27  Pseudomonas putida W619  Bacteria  normal  0.369454  normal 
 
 
-
 
NC_007348  Reut_B4212  cyclic nucleotide-binding: regulatory protein, Crp  39.06 
 
 
303 aa  121  9.999999999999999e-27  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_2471  CRP/FNR family transcriptional regulator  38.07 
 
 
273 aa  120  1.9999999999999998e-26  Pseudomonas putida F1  Bacteria  normal  0.185946  normal  0.661743 
 
 
-
 
NC_007492  Pfl01_3345  Crp/FNR family transcriptional regulator  33.74 
 
 
247 aa  120  3e-26  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.797997  normal 
 
 
-
 
NC_007908  Rfer_1937  Crp/FNR family transcriptional regulator  35.07 
 
 
223 aa  120  3e-26  Rhodoferax ferrireducens T118  Bacteria  normal  0.155753  n/a   
 
 
-
 
NC_008781  Pnap_3775  CRP/FNR family transcriptional regulator  31.86 
 
 
265 aa  120  3.9999999999999996e-26  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_1163  CRP/FNR family transcriptional regulator  32.16 
 
 
251 aa  119  3.9999999999999996e-26  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3287  Crp/FNR family transcriptional regulator  37.06 
 
 
265 aa  119  7.999999999999999e-26  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_2782  Crp/FNR family transcriptional regulator  30.53 
 
 
262 aa  118  9.999999999999999e-26  Delftia acidovorans SPH-1  Bacteria  normal  0.0680307  normal  0.414614 
 
 
-
 
NC_003295  RSc0190  transcription regulator protein  31.91 
 
 
266 aa  117  1.9999999999999998e-25  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.180711 
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  34.67 
 
 
254 aa  117  1.9999999999999998e-25  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A1785  fumarate/nitrate reduction transcriptional regulator  34.29 
 
 
250 aa  117  3e-25  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.377507  normal  0.141635 
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  34.29 
 
 
250 aa  117  3e-25  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  34.29 
 
 
250 aa  117  3e-25  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  34.29 
 
 
250 aa  117  3e-25  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
NC_011083  SeHA_C1845  fumarate/nitrate reduction transcriptional regulator  34.29 
 
 
250 aa  117  3e-25  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_012857  Rpic12D_4561  transcriptional regulator, Crp/Fnr family  31.2 
 
 
263 aa  115  6e-25  Ralstonia pickettii 12D  Bacteria  normal  normal  0.291712 
 
 
-
 
NC_010678  Rpic_4428  transcriptional regulator, Crp/Fnr family  31.2 
 
 
263 aa  115  6e-25  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_1288  transcriptional regulator, Crp/Fnr family  34.85 
 
 
246 aa  115  8.999999999999998e-25  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2311  transcriptional regulator, Crp/Fnr family  33.81 
 
 
250 aa  115  1.0000000000000001e-24  Escherichia coli DH1  Bacteria  normal  0.144598  n/a   
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  33.81 
 
 
250 aa  115  1.0000000000000001e-24  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_1981  fumarate/nitrate reduction transcriptional regulator  33.81 
 
 
250 aa  114  1.0000000000000001e-24  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.320226 
 
 
-
 
NC_007347  Reut_A2034  cyclic nucleotide-binding: regulatory protein, Crp  35.2 
 
 
232 aa  114  1.0000000000000001e-24  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  33.81 
 
 
250 aa  115  1.0000000000000001e-24  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1703  Crp/FNR family transcriptional regulator  35.75 
 
 
276 aa  115  1.0000000000000001e-24  Rhodoferax ferrireducens T118  Bacteria  normal  0.0806739  n/a   
 
 
-
 
NC_010468  EcolC_2291  fumarate/nitrate reduction transcriptional regulator  33.81 
 
 
250 aa  115  1.0000000000000001e-24  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1207  Crp/FNR family transcriptional regulator  34.07 
 
 
264 aa  114  1.0000000000000001e-24  Polaromonas sp. JS666  Bacteria  normal  0.494469  normal 
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  33.81 
 
 
250 aa  115  1.0000000000000001e-24  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  33.81 
 
 
250 aa  115  1.0000000000000001e-24  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2037  Crp/FNR family transcriptional regulator  35.79 
 
 
232 aa  114  2.0000000000000002e-24  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.441781 
 
 
-
 
NC_012917  PC1_2105  fumarate/nitrate reduction transcriptional regulator  33.82 
 
 
248 aa  112  5e-24  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0944449  n/a   
 
 
-
 
NC_003295  RSc1283  putative fumarate and nitrate reduction regulatory transcription regulator protein  34.01 
 
 
242 aa  112  5e-24  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0516193  normal  0.32826 
 
 
-
 
NC_012856  Rpic12D_1204  transcriptional regulator, Crp/Fnr family  34.01 
 
 
242 aa  112  6e-24  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2233  CRP/FNR family transcriptional regulator  30.53 
 
 
253 aa  112  7.000000000000001e-24  Marinomonas sp. MWYL1  Bacteria  normal  0.0375344  normal  0.791743 
 
 
-
 
NC_013421  Pecwa_2398  fumarate/nitrate reduction transcriptional regulator  33.33 
 
 
248 aa  112  9e-24  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_1111  transcriptional regulator, Crp/Fnr family  34.74 
 
 
242 aa  112  9e-24  Ralstonia pickettii 12J  Bacteria  normal  0.700786  normal  0.531022 
 
 
-
 
NC_011138  MADE_02063  transcriptional regulator of aerobic, anaerobic respiration, osmotic balance (CAMP-binding family) protein  31.58 
 
 
222 aa  110  2.0000000000000002e-23  Alteromonas macleodii 'Deep ecotype'  Bacteria  hitchhiker  0.00714534  n/a   
 
 
-
 
NC_007908  Rfer_1540  Crp/FNR family transcriptional regulator  33.68 
 
 
252 aa  110  2.0000000000000002e-23  Rhodoferax ferrireducens T118  Bacteria  normal  0.99772  n/a   
 
 
-
 
NC_009379  Pnuc_0460  CRP/FNR family transcriptional regulator  34.04 
 
 
256 aa  110  2.0000000000000002e-23  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_44490  transcriptional regulator Anr  32.44 
 
 
244 aa  111  2.0000000000000002e-23  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.793348 
 
 
-
 
NC_009656  PSPA7_3788  transcriptional regulator Anr  32.44 
 
 
244 aa  111  2.0000000000000002e-23  Pseudomonas aeruginosa PA7  Bacteria  normal  0.620164  n/a   
 
 
-
 
NC_002947  PP_4265  transcriptional regulator Anr  32.89 
 
 
244 aa  110  3e-23  Pseudomonas putida KT2440  Bacteria  normal  0.880812  normal 
 
 
-
 
NC_010552  BamMC406_4238  Crp/FNR family transcriptional regulator  33.02 
 
 
257 aa  110  3e-23  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0460631  normal 
 
 
-
 
NC_010531  Pnec_1356  transcriptional regulator, Crp/Fnr family  32.54 
 
 
256 aa  110  3e-23  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0588975 
 
 
-
 
NC_010322  PputGB1_3830  Crp/FNR family transcriptional regulator  32.89 
 
 
244 aa  110  3e-23  Pseudomonas putida GB-1  Bacteria  normal  normal  0.525453 
 
 
-
 
NC_009512  Pput_1603  CRP/FNR family transcriptional regulator  32.89 
 
 
244 aa  110  3e-23  Pseudomonas putida F1  Bacteria  normal  normal  0.138297 
 
 
-
 
NC_010501  PputW619_3583  Crp/FNR family transcriptional regulator  32.89 
 
 
244 aa  110  3e-23  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_1853  fumarate/nitrate reduction transcriptional regulator  32.86 
 
 
250 aa  110  3e-23  Enterobacter sp. 638  Bacteria  normal  normal  0.755428 
 
 
-
 
NC_010622  Bphy_1138  Crp/FNR family transcriptional regulator  32.84 
 
 
260 aa  110  3e-23  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1864  fumarate/nitrate reduction transcriptional regulator  32.38 
 
 
250 aa  110  4.0000000000000004e-23  Dickeya dadantii Ech703  Bacteria  normal  0.856056  n/a   
 
 
-
 
NC_008340  Mlg_0319  Crp/FNR family transcriptional regulator  35.12 
 
 
262 aa  110  4.0000000000000004e-23  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B1665  Crp/FNR family transcriptional regulator  33.49 
 
 
259 aa  109  5e-23  Burkholderia sp. 383  Bacteria  hitchhiker  0.00239618  normal  0.130389 
 
 
-
 
NC_012912  Dd1591_2081  fumarate/nitrate reduction transcriptional regulator  32.86 
 
 
250 aa  109  6e-23  Dickeya zeae Ech1591  Bacteria  normal  0.0488524  n/a   
 
 
-
 
NC_008061  Bcen_4012  Crp/FNR family transcriptional regulator  33.82 
 
 
259 aa  109  6e-23  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_5999  Crp/FNR family transcriptional regulator  33.82 
 
 
259 aa  109  6e-23  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.582695  normal 
 
 
-
 
NC_008543  Bcen2424_4355  Crp/FNR family transcriptional regulator  33.82 
 
 
259 aa  109  6e-23  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0811079  normal 
 
 
-
 
NC_007650  BTH_II0460  Crp/FNR family transcriptional regulator  32.21 
 
 
260 aa  108  7.000000000000001e-23  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010087  Bmul_5904  Crp/FNR family transcriptional regulator  35 
 
 
257 aa  108  7.000000000000001e-23  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.379633  normal  0.222249 
 
 
-
 
NC_008391  Bamb_3764  Crp/FNR family transcriptional regulator  31.69 
 
 
259 aa  108  7.000000000000001e-23  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0549839 
 
 
-
 
NC_010676  Bphyt_6315  transcriptional regulator, Crp/Fnr family  31.94 
 
 
403 aa  108  1e-22  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_2582  fumarate/nitrate reduction transcriptional regulator  33.67 
 
 
254 aa  108  1e-22  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_5811  Crp/FNR family transcriptional regulator  31.71 
 
 
266 aa  108  1e-22  Burkholderia phymatum STM815  Bacteria  normal  normal  0.118405 
 
 
-
 
NC_011312  VSAL_I1571  fumarate/nitrate reduction transcriptional regulator  33.67 
 
 
250 aa  108  1e-22  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.75505  n/a   
 
 
-
 
NC_013456  VEA_003475  fumarate and nitrate reduction regulatory protein  34.17 
 
 
248 aa  108  1e-22  Vibrio sp. Ex25  Bacteria  normal  0.292896  n/a   
 
 
-
 
NC_009783  VIBHAR_02295  fumarate/nitrate reduction transcriptional regulator  34.17 
 
 
248 aa  107  2e-22  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  32.35 
 
 
250 aa  107  2e-22  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_007492  Pfl01_1811  Crp/FNR family transcriptional regulator  31.56 
 
 
244 aa  107  2e-22  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010557  BamMC406_6195  Crp/FNR family transcriptional regulator  34 
 
 
257 aa  107  2e-22  Burkholderia ambifaria MC40-6  Bacteria  normal  0.107166  normal  0.295507 
 
 
-
 
NC_008391  Bamb_3812  Crp/FNR family transcriptional regulator  31.97 
 
 
257 aa  107  2e-22  Burkholderia ambifaria AMMD  Bacteria  normal  0.279241  normal  0.577974 
 
 
-
 
NC_010552  BamMC406_4280  Crp/FNR family transcriptional regulator  31.97 
 
 
257 aa  107  2e-22  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.0900166 
 
 
-
 
NC_008709  Ping_0931  fumarate/nitrate reduction transcriptional regulator  28.57 
 
 
249 aa  107  3e-22  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.896198 
 
 
-
 
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