More than 300 homologs were found in PanDaTox collection
for query gene Bcav_3898 on replicon NC_012669
Organism: Beutenbergia cavernae DSM 12333



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012669  Bcav_3898  binding-protein-dependent transport systems inner membrane component  100 
 
 
324 aa  632  1e-180  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_3328  binding-protein-dependent transport systems inner membrane component  61.99 
 
 
314 aa  389  1e-107  Arthrobacter sp. FB24  Bacteria  normal  0.0166533  n/a   
 
 
-
 
NC_011886  Achl_3130  binding-protein-dependent transport systems inner membrane component  62.67 
 
 
314 aa  389  1e-107  Arthrobacter chlorophenolicus A6  Bacteria  n/a    decreased coverage  0.00699527 
 
 
-
 
NC_007333  Tfu_1704  putative transport system permease ABC transporter protein  64.93 
 
 
324 aa  384  1e-106  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1533  binding-protein-dependent transport systems inner membrane component  64.91 
 
 
318 aa  380  1e-104  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.384041  normal  0.0165665 
 
 
-
 
NC_012669  Bcav_3555  binding-protein-dependent transport systems inner membrane component  63.73 
 
 
313 aa  376  1e-103  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.582328  normal  0.269585 
 
 
-
 
NC_014210  Ndas_2034  binding-protein-dependent transport systems inner membrane component  58.93 
 
 
323 aa  377  1e-103  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.059557  normal  0.598754 
 
 
-
 
NC_011369  Rleg2_4016  binding-protein-dependent transport systems inner membrane component  58.33 
 
 
319 aa  375  1e-103  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_2535  binding-protein-dependent transport systems inner membrane component  59.12 
 
 
314 aa  377  1e-103  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_4345  binding-protein-dependent transport systems inner membrane component  58.33 
 
 
319 aa  377  1e-103  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  hitchhiker  0.0000915897 
 
 
-
 
NC_011988  Avi_5581  ABC transporter membrane spanning protein (galacturonic acid)  58.1 
 
 
314 aa  369  1e-101  Agrobacterium vitis S4  Bacteria  normal  0.512211  n/a   
 
 
-
 
NC_009636  Smed_3328  binding-protein-dependent transport systems inner membrane component  60.42 
 
 
318 aa  368  1e-101  Sinorhizobium medicae WSM419  Bacteria  normal  0.670475  normal  0.953703 
 
 
-
 
NC_012669  Bcav_0801  binding-protein-dependent transport systems inner membrane component  64.85 
 
 
319 aa  369  1e-101  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.836257  decreased coverage  0.00115511 
 
 
-
 
NC_014210  Ndas_0559  binding-protein-dependent transport systems inner membrane component  58.33 
 
 
305 aa  359  4e-98  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_05250  carbohydrate ABC transporter membrane protein  59.12 
 
 
309 aa  355  5.999999999999999e-97  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_0498  binding-protein-dependent transport systems inner membrane component  59.31 
 
 
317 aa  355  6.999999999999999e-97  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000449996 
 
 
-
 
NC_009664  Krad_2143  binding-protein-dependent transport systems inner membrane component  58.01 
 
 
318 aa  353  2e-96  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_2648  binding-protein-dependent transport systems inner membrane component  58.6 
 
 
315 aa  350  2e-95  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.604604  n/a   
 
 
-
 
NC_013172  Bfae_29720  carbohydrate ABC transporter membrane protein  55.59 
 
 
312 aa  347  1e-94  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_05430  carbohydrate ABC transporter membrane protein  53.77 
 
 
321 aa  346  3e-94  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0550121  normal 
 
 
-
 
NC_012669  Bcav_0920  binding-protein-dependent transport systems inner membrane component  61.89 
 
 
319 aa  335  7e-91  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_0898  binding-protein-dependent transport systems inner membrane component  52.19 
 
 
319 aa  330  2e-89  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.14469  n/a   
 
 
-
 
NC_009664  Krad_2230  binding-protein-dependent transport systems inner membrane component  57.19 
 
 
316 aa  328  6e-89  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0590  binding-protein-dependent transport systems inner membrane component  53.92 
 
 
322 aa  328  8e-89  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0414899  normal  0.0385996 
 
 
-
 
NC_008541  Arth_3323  binding-protein-dependent transport systems inner membrane component  54.97 
 
 
317 aa  320  1.9999999999999998e-86  Arthrobacter sp. FB24  Bacteria  normal  0.0473972  n/a   
 
 
-
 
NC_013093  Amir_0971  binding-protein-dependent transport systems inner membrane component  57.14 
 
 
318 aa  319  3e-86  Actinosynnema mirum DSM 43827  Bacteria  normal  0.402329  n/a   
 
 
-
 
NC_012669  Bcav_0792  binding-protein-dependent transport systems inner membrane component  62.2 
 
 
320 aa  319  3.9999999999999996e-86  Beutenbergia cavernae DSM 12333  Bacteria  normal  hitchhiker  0.00615148 
 
 
-
 
NC_011886  Achl_3123  binding-protein-dependent transport systems inner membrane component  53.21 
 
 
317 aa  316  3e-85  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.205507 
 
 
-
 
NC_012034  Athe_2080  binding-protein-dependent transport systems inner membrane component  50.82 
 
 
308 aa  301  7.000000000000001e-81  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.136718  n/a   
 
 
-
 
NC_010001  Cphy_3401  binding-protein-dependent transport systems inner membrane component  48.94 
 
 
305 aa  295  8e-79  Clostridium phytofermentans ISDg  Bacteria  normal  0.028536  n/a   
 
 
-
 
NC_013205  Aaci_2459  binding-protein-dependent transport systems inner membrane component  51.89 
 
 
331 aa  293  2e-78  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.216304  n/a   
 
 
-
 
NC_009654  Mmwyl1_0774  binding-protein-dependent transport systems inner membrane component  48.42 
 
 
293 aa  293  3e-78  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_2375  binding-protein-dependent transport systems inner membrane component  47.6 
 
 
298 aa  286  4e-76  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1907  binding-protein-dependent transport systems inner membrane component  46.88 
 
 
296 aa  284  1.0000000000000001e-75  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0961638  n/a   
 
 
-
 
NC_013421  Pecwa_2200  binding-protein-dependent transport systems inner membrane component  46.53 
 
 
296 aa  282  5.000000000000001e-75  Pectobacterium wasabiae WPP163  Bacteria  normal  0.467118  n/a   
 
 
-
 
NC_012912  Dd1591_1969  binding-protein-dependent transport systems inner membrane component  46.53 
 
 
296 aa  282  6.000000000000001e-75  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3289  binding-protein-dependent transport systems inner membrane component  46.13 
 
 
296 aa  280  2e-74  Enterobacter sp. 638  Bacteria  normal  normal  0.243021 
 
 
-
 
NC_011661  Dtur_0438  binding-protein-dependent transport systems inner membrane component  44.63 
 
 
302 aa  280  2e-74  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.00000597022  n/a   
 
 
-
 
NC_009708  YpsIP31758_1691  oligogalacturonide ABC tansporter, permease protein  45.14 
 
 
296 aa  280  3e-74  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.041328  n/a   
 
 
-
 
NC_010465  YPK_1801  binding-protein-dependent transport systems inner membrane component  45.14 
 
 
296 aa  280  3e-74  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.780468  n/a   
 
 
-
 
NC_012880  Dd703_2034  binding-protein-dependent transport systems inner membrane component  45.83 
 
 
296 aa  279  4e-74  Dickeya dadantii Ech703  Bacteria  normal  0.963086  n/a   
 
 
-
 
NC_010159  YpAngola_A2645  oligogalacturonide ABC tansporter, permease  44.79 
 
 
296 aa  277  2e-73  Yersinia pestis Angola  Bacteria  normal  0.952468  normal  0.0439933 
 
 
-
 
NC_013517  Sterm_4049  binding-protein-dependent transport systems inner membrane component  44.76 
 
 
292 aa  276  4e-73  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_0698  binding-protein-dependent transport systems inner membrane component  44.13 
 
 
293 aa  270  2.9999999999999997e-71  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_1357  binding-protein-dependent transport systems inner membrane component  46.5 
 
 
316 aa  265  7e-70  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2523  binding-protein-dependent transport systems inner membrane component  44.41 
 
 
309 aa  256  3e-67  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00000000325465  n/a   
 
 
-
 
NC_010001  Cphy_0620  binding-protein-dependent transport systems inner membrane component  44.13 
 
 
305 aa  255  6e-67  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000205165  n/a   
 
 
-
 
NC_009767  Rcas_3564  binding-protein-dependent transport systems inner membrane component  47.08 
 
 
316 aa  246  3e-64  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.264329 
 
 
-
 
NC_013526  Tter_2217  binding-protein-dependent transport systems inner membrane component  42.23 
 
 
305 aa  245  8e-64  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_2545  binding-protein-dependent transport systems inner membrane component  40.52 
 
 
316 aa  241  2e-62  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.637107  normal  0.115222 
 
 
-
 
NC_013526  Tter_2316  binding-protein-dependent transport systems inner membrane component  42.76 
 
 
313 aa  240  2e-62  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2453  binding-protein-dependent transport systems inner membrane component  41.86 
 
 
314 aa  238  9e-62  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000200699  n/a   
 
 
-
 
NC_009523  RoseRS_2819  binding-protein-dependent transport systems inner membrane component  40.69 
 
 
315 aa  238  1e-61  Roseiflexus sp. RS-1  Bacteria  normal  0.0308401  normal 
 
 
-
 
NC_013521  Sked_27700  permease component of ABC-type sugar transporter  39.57 
 
 
321 aa  235  6e-61  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479477 
 
 
-
 
NC_013526  Tter_2136  binding-protein-dependent transport systems inner membrane component  45.3 
 
 
307 aa  233  4.0000000000000004e-60  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2041  binding-protein-dependent transport systems inner membrane component  46.3 
 
 
305 aa  231  1e-59  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00457854  n/a   
 
 
-
 
NC_013526  Tter_2511  binding-protein-dependent transport systems inner membrane component  43.45 
 
 
317 aa  231  1e-59  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.10809  n/a   
 
 
-
 
NC_012669  Bcav_0311  binding-protein-dependent transport systems inner membrane component  39.73 
 
 
321 aa  224  1e-57  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1469  binding-protein-dependent transport systems inner membrane component  44.56 
 
 
283 aa  223  4.9999999999999996e-57  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0263  binding-protein-dependent transport systems inner membrane component  37.66 
 
 
317 aa  222  6e-57  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010320  Teth514_2200  binding-protein-dependent transport systems inner membrane component  41.79 
 
 
299 aa  221  9.999999999999999e-57  Thermoanaerobacter sp. X514  Bacteria  normal  0.426381  n/a   
 
 
-
 
NC_013526  Tter_2506  binding-protein-dependent transport systems inner membrane component  44.3 
 
 
306 aa  221  1.9999999999999999e-56  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000185658  n/a   
 
 
-
 
NC_009523  RoseRS_3621  binding-protein-dependent transport systems inner membrane component  38.49 
 
 
335 aa  219  3.9999999999999997e-56  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_1749  binding-protein-dependent transport systems inner membrane component  45.02 
 
 
307 aa  217  2e-55  Opitutus terrae PB90-1  Bacteria  normal  0.45981  normal 
 
 
-
 
NC_009767  Rcas_0514  binding-protein-dependent transport systems inner membrane component  37.85 
 
 
335 aa  216  2.9999999999999998e-55  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.950902  normal 
 
 
-
 
NC_013525  Tter_0507  binding-protein-dependent transport systems inner membrane component  42.43 
 
 
309 aa  216  5e-55  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_3002  binding-protein-dependent transport systems inner membrane component  41.69 
 
 
320 aa  209  4e-53  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3792  binding-protein-dependent transport systems inner membrane component  40.99 
 
 
285 aa  209  6e-53  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.168129  normal 
 
 
-
 
NC_013517  Sterm_0718  binding-protein-dependent transport systems inner membrane component  37.29 
 
 
319 aa  206  3e-52  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.491906  n/a   
 
 
-
 
NC_013525  Tter_0125  binding-protein-dependent transport systems inner membrane component  41.47 
 
 
302 aa  205  1e-51  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009616  Tmel_1015  binding-protein-dependent transport systems inner membrane component  36.08 
 
 
292 aa  199  6e-50  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_2544  binding-protein-dependent transport systems inner membrane component  39.18 
 
 
313 aa  190  2e-47  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_0593  binding-protein-dependent transport systems inner membrane component  38.31 
 
 
308 aa  189  4e-47  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000379306  n/a   
 
 
-
 
NC_010320  Teth514_1100  binding-protein-dependent transport systems inner membrane component  37.29 
 
 
300 aa  188  1e-46  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3990  binding-protein-dependent transport systems inner membrane component  36.89 
 
 
317 aa  187  2e-46  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_0382  binding-protein-dependent transport systems inner membrane component  36.47 
 
 
296 aa  186  4e-46  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0400  binding-protein-dependent transport systems inner membrane component  35 
 
 
295 aa  186  4e-46  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.000000000506379  n/a   
 
 
-
 
NC_003909  BCE_1900  sugar ABC transporter, permease protein, putative  36.84 
 
 
314 aa  186  6e-46  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1635  sugar ABC transporter, permease  36.84 
 
 
314 aa  186  6e-46  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_4634  binding-protein-dependent transport systems inner membrane component  41.43 
 
 
292 aa  185  7e-46  Nocardioides sp. JS614  Bacteria  normal  0.219562  n/a   
 
 
-
 
NC_011831  Cagg_0728  binding-protein-dependent transport systems inner membrane component  37.76 
 
 
313 aa  185  1.0000000000000001e-45  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000239391  normal 
 
 
-
 
NC_013174  Jden_0512  binding-protein-dependent transport systems inner membrane component  37.13 
 
 
318 aa  183  3e-45  Jonesia denitrificans DSM 20603  Bacteria  hitchhiker  0.000000473727  hitchhiker  0.00124128 
 
 
-
 
NC_013525  Tter_0184  binding-protein-dependent transport systems inner membrane component  39.73 
 
 
330 aa  183  4.0000000000000006e-45  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_1656  binding-protein-dependent transport systems inner membrane component  39.75 
 
 
318 aa  182  5.0000000000000004e-45  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.152531  normal  0.26367 
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  40.29 
 
 
309 aa  182  6e-45  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_014213  Mesil_3393  binding-protein-dependent transport systems inner membrane component  36.05 
 
 
291 aa  182  7e-45  Meiothermus silvanus DSM 9946  Bacteria  normal  0.199241  normal  0.935882 
 
 
-
 
NC_013411  GYMC61_1728  binding-protein-dependent transport systems inner membrane component  38.55 
 
 
299 aa  182  8.000000000000001e-45  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008262  CPR_0477  ABC tranporter, permease protein  34.04 
 
 
315 aa  181  2e-44  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_21160  carbohydrate ABC transporter membrane protein  37.81 
 
 
314 aa  181  2e-44  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.103465  normal  0.100515 
 
 
-
 
NC_011661  Dtur_0377  binding-protein-dependent transport systems inner membrane component  36.64 
 
 
294 aa  181  2e-44  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0461  binding-protein dependent transport system inner membrane protein  37.09 
 
 
301 aa  180  2.9999999999999997e-44  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0667876 
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  35.34 
 
 
295 aa  180  4e-44  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_12077  sugar ABC transporter membrane protein  36.8 
 
 
300 aa  179  8e-44  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5350  binding-protein-dependent transport systems inner membrane component  34.09 
 
 
308 aa  178  9e-44  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.84186  normal  0.48209 
 
 
-
 
NC_013526  Tter_2302  binding-protein-dependent transport systems inner membrane component  34.12 
 
 
320 aa  178  1e-43  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.253823  n/a   
 
 
-
 
NC_013411  GYMC61_2730  binding-protein-dependent transport systems inner membrane component  37.46 
 
 
300 aa  177  2e-43  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_2365  sugar ABC transporter, permease protein  38.18 
 
 
288 aa  177  3e-43  Streptosporangium roseum DSM 43021  Bacteria  normal  0.216835  normal 
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  38.63 
 
 
287 aa  176  7e-43  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_1637  binding-protein-dependent transport systems inner membrane component  37.09 
 
 
303 aa  175  7e-43  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.0695484  n/a   
 
 
-
 
NC_008025  Dgeo_1168  binding-protein-dependent transport systems inner membrane component  36.93 
 
 
310 aa  175  9.999999999999999e-43  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.155614  normal 
 
 
-
 
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