More than 300 homologs were found in PanDaTox collection
for query gene Mext_3729 on replicon NC_010172
Organism: Methylobacterium extorquens PA1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011757  Mchl_4024  binding-protein-dependent transport systems inner membrane component  98.58 
 
 
353 aa  676    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3729  binding-protein-dependent transport systems inner membrane component  100 
 
 
353 aa  686    Methylobacterium extorquens PA1  Bacteria  normal  normal  0.19574 
 
 
-
 
NC_010725  Mpop_3907  binding-protein-dependent transport systems inner membrane component  89.74 
 
 
357 aa  602  1.0000000000000001e-171  Methylobacterium populi BJ001  Bacteria  normal  0.0334046  normal  0.137928 
 
 
-
 
NC_008062  Bcen_5556  binding-protein-dependent transport systems inner membrane component  63.72 
 
 
324 aa  427  1e-118  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0488095  n/a   
 
 
-
 
NC_008544  Bcen2424_5921  binding-protein-dependent transport systems inner membrane component  63.72 
 
 
324 aa  427  1e-118  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_5226  binding-protein-dependent transport systems inner membrane component  63.06 
 
 
323 aa  420  1e-116  Burkholderia phytofirmans PsJN  Bacteria  normal  0.226274  normal 
 
 
-
 
NC_010512  Bcenmc03_6428  binding-protein-dependent transport systems inner membrane component  63.72 
 
 
324 aa  420  1e-116  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1386  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  61.9 
 
 
323 aa  413  1e-114  Burkholderia xenovorans LB400  Bacteria  normal  0.173943  normal  0.101646 
 
 
-
 
NC_007298  Daro_0080  binding-protein dependent transport system inner membrane protein  65.7 
 
 
318 aa  402  1e-111  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1858  binding-protein-dependent transport systems inner membrane component  62.18 
 
 
321 aa  399  9.999999999999999e-111  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_3082  binding-protein-dependent transport systems inner membrane component  61.09 
 
 
319 aa  376  1e-103  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_0791  binding-protein-dependent transport systems inner membrane component  57.96 
 
 
320 aa  374  1e-102  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_1787  binding-protein dependent transport system inner membrane protein  57.59 
 
 
326 aa  353  2.9999999999999997e-96  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_0040  binding-protein-dependent transport systems inner membrane component  40.97 
 
 
259 aa  167  2.9999999999999998e-40  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.832577  normal  0.34867 
 
 
-
 
NC_008786  Veis_3788  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
276 aa  163  5.0000000000000005e-39  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.374556  normal 
 
 
-
 
NC_007644  Moth_0466  binding-protein dependent transport system inner membrane protein  44.32 
 
 
262 aa  155  8e-37  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_2559  binding-protein-dependent transport systems inner membrane component  38.64 
 
 
283 aa  150  2e-35  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_0146  binding-protein-dependent transport systems inner membrane component  41.75 
 
 
296 aa  147  2.0000000000000003e-34  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.159688 
 
 
-
 
NC_007492  Pfl01_4930  binding-protein dependent transport system inner membrane protein  36.44 
 
 
267 aa  145  8.000000000000001e-34  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_2858  binding-protein-dependent transport systems inner membrane component  42.16 
 
 
291 aa  145  1e-33  Cupriavidus metallidurans CH34  Bacteria  normal  0.582448  normal 
 
 
-
 
NC_007347  Reut_A2719  binding-protein dependent transport system inner membrane protein  41.76 
 
 
284 aa  144  2e-33  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B4887  binding-protein dependent transport system inner membrane protein  45.96 
 
 
296 aa  144  2e-33  Ralstonia eutropha JMP134  Bacteria  normal  0.0123695  n/a   
 
 
-
 
NC_010511  M446_2276  binding-protein-dependent transport systems inner membrane component  45.11 
 
 
257 aa  144  2e-33  Methylobacterium sp. 4-46  Bacteria  normal  0.722283  normal  0.0991744 
 
 
-
 
NC_008752  Aave_2968  binding-protein-dependent transport systems inner membrane component  41.24 
 
 
289 aa  144  2e-33  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0761961  normal 
 
 
-
 
NC_011894  Mnod_0326  binding-protein-dependent transport systems inner membrane component  37.55 
 
 
257 aa  144  3e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.369486  n/a   
 
 
-
 
NC_008786  Veis_3642  binding-protein-dependent transport systems inner membrane component  37.39 
 
 
275 aa  142  9e-33  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.142025  normal 
 
 
-
 
NC_011884  Cyan7425_3255  binding-protein-dependent transport systems inner membrane component  35.81 
 
 
294 aa  135  1.9999999999999998e-30  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.106321 
 
 
-
 
NC_007948  Bpro_1046  binding-protein-dependent transport systems inner membrane component  39.13 
 
 
282 aa  134  1.9999999999999998e-30  Polaromonas sp. JS666  Bacteria  normal  0.12004  normal  0.278615 
 
 
-
 
NC_011368  Rleg2_5005  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
267 aa  131  2.0000000000000002e-29  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_0058  binding-protein-dependent transport systems inner membrane component  34.55 
 
 
275 aa  130  5.0000000000000004e-29  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_012791  Vapar_0155  binding-protein-dependent transport systems inner membrane component  41.62 
 
 
292 aa  130  5.0000000000000004e-29  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_1429  binding-protein-dependent transport systems inner membrane component  44.75 
 
 
257 aa  129  6e-29  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.214609  n/a   
 
 
-
 
NC_013223  Dret_1646  binding-protein-dependent transport systems inner membrane component  36.68 
 
 
259 aa  129  8.000000000000001e-29  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_2644  binding-protein-dependent transport systems inner membrane component  42.86 
 
 
282 aa  127  3e-28  Dickeya dadantii Ech703  Bacteria  normal  0.285231  n/a   
 
 
-
 
NC_007516  Syncc9605_1078  ABC transporter, nitrate-like  36.87 
 
 
275 aa  122  9e-27  Synechococcus sp. CC9605  Bacteria  normal  0.193306  normal 
 
 
-
 
NC_009485  BBta_6456  ABC transporter permease  47.22 
 
 
258 aa  122  9.999999999999999e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.405099  normal 
 
 
-
 
NC_009720  Xaut_4051  binding-protein-dependent transport systems inner membrane component  33.05 
 
 
273 aa  115  7.999999999999999e-25  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.395379 
 
 
-
 
NC_009512  Pput_0246  binding-protein-dependent transport systems inner membrane component  33.19 
 
 
279 aa  114  2.0000000000000002e-24  Pseudomonas putida F1  Bacteria  normal  0.0570948  normal  0.0921514 
 
 
-
 
NC_010501  PputW619_4981  binding-protein-dependent transport systems inner membrane component  33.19 
 
 
279 aa  114  3e-24  Pseudomonas putida W619  Bacteria  normal  normal  0.588836 
 
 
-
 
NC_002947  PP_0231  binding-protein-dependent transport systems inner membrane component  33.19 
 
 
279 aa  113  4.0000000000000004e-24  Pseudomonas putida KT2440  Bacteria  normal  0.33405  hitchhiker  0.000710194 
 
 
-
 
NC_004578  PSPTO_5321  taurine ABC transporter, permease protein  34.45 
 
 
285 aa  112  7.000000000000001e-24  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1488  binding-protein dependent transport system inner membrane protein  33.77 
 
 
280 aa  112  9e-24  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.106569  normal  0.790334 
 
 
-
 
NC_010172  Mext_1261  binding-protein-dependent transport systems inner membrane component  31.51 
 
 
273 aa  112  1.0000000000000001e-23  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.306936 
 
 
-
 
NC_011757  Mchl_1422  binding-protein-dependent transport systems inner membrane component  31.51 
 
 
273 aa  112  1.0000000000000001e-23  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0254  binding-protein dependent transport system inner membrane protein  34.06 
 
 
279 aa  110  4.0000000000000004e-23  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.57663 
 
 
-
 
NC_011004  Rpal_2882  binding-protein-dependent transport systems inner membrane component  33.94 
 
 
268 aa  109  7.000000000000001e-23  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.80309  n/a   
 
 
-
 
NC_010322  PputGB1_0255  binding-protein-dependent transport systems inner membrane component  33.19 
 
 
279 aa  108  1e-22  Pseudomonas putida GB-1  Bacteria  normal  0.796344  normal 
 
 
-
 
NC_009075  BURPS668_A2220  taurine ABC transporter, permease protein  34.48 
 
 
283 aa  108  1e-22  Burkholderia pseudomallei 668  Bacteria  normal  0.215273  n/a   
 
 
-
 
NC_010725  Mpop_1211  binding-protein-dependent transport systems inner membrane component  30.67 
 
 
273 aa  107  2e-22  Methylobacterium populi BJ001  Bacteria  normal  0.132759  normal  0.452833 
 
 
-
 
NC_008786  Veis_1108  binding-protein-dependent transport systems inner membrane component  29.76 
 
 
255 aa  108  2e-22  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.135552 
 
 
-
 
NC_008835  BMA10229_2019  taurine ABC transporter, permease protein  34.17 
 
 
285 aa  108  2e-22  Burkholderia mallei NCTC 10229  Bacteria  normal  0.484134  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2133  taurine ABC transporter, permease protein  34.48 
 
 
283 aa  108  2e-22  Burkholderia pseudomallei 1106a  Bacteria  normal  0.186654  n/a   
 
 
-
 
NC_009079  BMA10247_A0697  taurine ABC transporter, permease protein  34.17 
 
 
283 aa  108  2e-22  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_0403  binding-protein-dependent transport systems inner membrane component  32.64 
 
 
256 aa  107  3e-22  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1580  taurine ABC transporter, permease protein  34.17 
 
 
253 aa  107  3e-22  Burkholderia mallei ATCC 23344  Bacteria  normal  0.477521  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0620  permease component of taurine ABC transporter  34.48 
 
 
253 aa  107  3e-22  Burkholderia pseudomallei 1710b  Bacteria  decreased coverage  0.00192231  n/a   
 
 
-
 
NC_012792  Vapar_5517  binding-protein-dependent transport systems inner membrane component  30.66 
 
 
256 aa  107  4e-22  Variovorax paradoxus S110  Bacteria  normal  0.16627  n/a   
 
 
-
 
NC_013522  Taci_0398  binding-protein-dependent transport systems inner membrane component  33.97 
 
 
278 aa  106  8e-22  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_2152  binding-protein dependent transport system inner membrane protein  30.38 
 
 
271 aa  105  1e-21  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.529987 
 
 
-
 
NC_013595  Sros_3065  binding-protein-dependent transport systems inner membrane component  33.94 
 
 
280 aa  104  2e-21  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.228654 
 
 
-
 
NC_013595  Sros_8275  ABC-type transporter, permease protein  33.48 
 
 
272 aa  104  2e-21  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.144641 
 
 
-
 
NC_007650  BTH_II0802  taurine ABC transporter, permease protein  33.99 
 
 
283 aa  105  2e-21  Burkholderia thailandensis E264  Bacteria  normal  0.207449  n/a   
 
 
-
 
NC_007778  RPB_4060  binding-protein dependent transport system inner membrane protein  30.3 
 
 
256 aa  105  2e-21  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_4201  binding-protein-dependent transport systems inner membrane component  30.26 
 
 
305 aa  102  8e-21  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0464  binding-protein-dependent transport systems inner membrane component  28.7 
 
 
288 aa  102  1e-20  Methylobacterium sp. 4-46  Bacteria  normal  0.349721  hitchhiker  0.00645779 
 
 
-
 
NC_011004  Rpal_4641  binding-protein-dependent transport systems inner membrane component  31 
 
 
277 aa  102  1e-20  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.750363  n/a   
 
 
-
 
NC_009832  Spro_4564  taurine transporter subunit  31.88 
 
 
279 aa  102  1e-20  Serratia proteamaculans 568  Bacteria  normal  normal  0.746145 
 
 
-
 
NC_008752  Aave_0047  binding-protein-dependent transport systems inner membrane component  32.89 
 
 
306 aa  102  1e-20  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3438  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
301 aa  101  2e-20  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4861  binding-protein-dependent transport systems inner membrane component  32.44 
 
 
275 aa  101  2e-20  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0877464 
 
 
-
 
NC_009675  Anae109_3869  binding-protein-dependent transport systems inner membrane component  29.71 
 
 
274 aa  100  3e-20  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_16930  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  32.75 
 
 
322 aa  100  4e-20  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.327  normal  0.410158 
 
 
-
 
NC_009708  YpsIP31758_0355  putative ABC aliphatic sulfonates transporter, permease subunit  31.54 
 
 
264 aa  100  5e-20  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_0423  binding-protein-dependent transport systems inner membrane component  31.54 
 
 
264 aa  100  5e-20  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_0260  taurine transporter subunit  30.67 
 
 
284 aa  99.8  6e-20  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_3936  taurine transporter subunit  30.67 
 
 
284 aa  99.8  6e-20  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3693  taurine transporter subunit  30.67 
 
 
284 aa  99.8  6e-20  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0397  binding-protein-dependent transport systems inner membrane component  30.57 
 
 
285 aa  99.8  7e-20  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.987071 
 
 
-
 
NC_010681  Bphyt_0509  binding-protein-dependent transport systems inner membrane component  31.72 
 
 
289 aa  99.8  7e-20  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.085274 
 
 
-
 
NC_014150  Bmur_2553  binding-protein-dependent transport systems inner membrane component  30.16 
 
 
275 aa  99.8  7e-20  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1127  binding-protein-dependent transport systems inner membrane component  31.84 
 
 
267 aa  99.4  8e-20  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_2085  binding-protein-dependent transport systems inner membrane component  31.77 
 
 
319 aa  99.4  8e-20  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.0787698 
 
 
-
 
NC_009832  Spro_1736  binding-protein-dependent transport systems inner membrane component  30.9 
 
 
264 aa  99.4  9e-20  Serratia proteamaculans 568  Bacteria  normal  0.440066  normal  0.144233 
 
 
-
 
NC_007953  Bxe_C0085  taurine ABC transporter inner membrane protein  30.4 
 
 
283 aa  99.4  9e-20  Burkholderia xenovorans LB400  Bacteria  normal  0.664827  normal  0.135193 
 
 
-
 
NC_010510  Mrad2831_6154  binding-protein-dependent transport systems inner membrane component  30.73 
 
 
295 aa  98.6  1e-19  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0332  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
279 aa  97.8  2e-19  Methylobacterium extorquens PA1  Bacteria  normal  0.692278  normal 
 
 
-
 
NC_012880  Dd703_1642  binding-protein-dependent transport systems inner membrane component  33.03 
 
 
263 aa  97.8  2e-19  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_3459  binding-protein-dependent transport systems inner membrane component  29.74 
 
 
283 aa  97.8  2e-19  Xanthobacter autotrophicus Py2  Bacteria  normal  0.703735  normal 
 
 
-
 
NC_007953  Bxe_C0735  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  27.31 
 
 
273 aa  97.8  2e-19  Burkholderia xenovorans LB400  Bacteria  normal  0.714635  normal 
 
 
-
 
NC_012912  Dd1591_1673  binding-protein-dependent transport systems inner membrane component  33.03 
 
 
263 aa  98.2  2e-19  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_1575  binding-protein-dependent transport systems inner membrane component  28.12 
 
 
266 aa  98.6  2e-19  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_1145  binding-protein-dependent transport systems inner membrane component  31.38 
 
 
279 aa  97.4  3e-19  Methanosphaerula palustris E1-9c  Archaea  normal  0.208956  normal 
 
 
-
 
NC_008542  Bcen2424_2884  binding-protein-dependent transport systems inner membrane component  30.84 
 
 
269 aa  97.4  3e-19  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0421  binding-protein-dependent transport systems inner membrane component  30.84 
 
 
321 aa  97.4  3e-19  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.905374 
 
 
-
 
NC_009668  Oant_3505  binding-protein-dependent transport systems inner membrane component  28.44 
 
 
275 aa  97.4  4e-19  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.197989  n/a   
 
 
-
 
NC_009485  BBta_6545  ABC transporter permease  29.51 
 
 
269 aa  97.1  4e-19  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.276106 
 
 
-
 
NC_008060  Bcen_2269  binding-protein-dependent transport systems inner membrane component  30.84 
 
 
321 aa  96.7  5e-19  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_21990  ABC transporter, inner membrane permease component  31.46 
 
 
273 aa  97.1  5e-19  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_2894  binding-protein-dependent transport systems inner membrane component  30.84 
 
 
321 aa  96.7  5e-19  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.438311 
 
 
-
 
NC_009634  Mevan_0512  binding-protein-dependent transport systems inner membrane component  32.46 
 
 
253 aa  96.7  5e-19  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
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