More than 300 homologs were found in PanDaTox collection
for query gene Tcr_1787 on replicon NC_007520
Organism: Thiomicrospira crunogena XCL-2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007520  Tcr_1787  binding-protein dependent transport system inner membrane protein  100 
 
 
326 aa  660    Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_3082  binding-protein-dependent transport systems inner membrane component  66.56 
 
 
319 aa  421  1e-117  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_0791  binding-protein-dependent transport systems inner membrane component  61.64 
 
 
320 aa  408  1e-113  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_5226  binding-protein-dependent transport systems inner membrane component  60.99 
 
 
323 aa  405  1.0000000000000001e-112  Burkholderia phytofirmans PsJN  Bacteria  normal  0.226274  normal 
 
 
-
 
NC_007947  Mfla_1858  binding-protein-dependent transport systems inner membrane component  62.78 
 
 
321 aa  404  1e-111  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1386  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  60.68 
 
 
323 aa  401  1e-111  Burkholderia xenovorans LB400  Bacteria  normal  0.173943  normal  0.101646 
 
 
-
 
NC_010512  Bcenmc03_6428  binding-protein-dependent transport systems inner membrane component  60.69 
 
 
324 aa  398  9.999999999999999e-111  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008062  Bcen_5556  binding-protein-dependent transport systems inner membrane component  60.69 
 
 
324 aa  400  9.999999999999999e-111  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0488095  n/a   
 
 
-
 
NC_008544  Bcen2424_5921  binding-protein-dependent transport systems inner membrane component  60.69 
 
 
324 aa  400  9.999999999999999e-111  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0080  binding-protein dependent transport system inner membrane protein  64.05 
 
 
318 aa  394  1e-109  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3907  binding-protein-dependent transport systems inner membrane component  59.12 
 
 
357 aa  372  1e-102  Methylobacterium populi BJ001  Bacteria  normal  0.0334046  normal  0.137928 
 
 
-
 
NC_011757  Mchl_4024  binding-protein-dependent transport systems inner membrane component  57.91 
 
 
353 aa  357  9.999999999999999e-98  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3729  binding-protein-dependent transport systems inner membrane component  57.59 
 
 
353 aa  354  1e-96  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.19574 
 
 
-
 
NC_008781  Pnap_0040  binding-protein-dependent transport systems inner membrane component  39.47 
 
 
259 aa  168  1e-40  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.832577  normal  0.34867 
 
 
-
 
NC_008786  Veis_3788  binding-protein-dependent transport systems inner membrane component  40.71 
 
 
276 aa  166  6.9999999999999995e-40  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.374556  normal 
 
 
-
 
NC_007947  Mfla_2559  binding-protein-dependent transport systems inner membrane component  43.62 
 
 
283 aa  162  9e-39  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_2858  binding-protein-dependent transport systems inner membrane component  39.81 
 
 
291 aa  162  1e-38  Cupriavidus metallidurans CH34  Bacteria  normal  0.582448  normal 
 
 
-
 
NC_007347  Reut_A2719  binding-protein dependent transport system inner membrane protein  41.54 
 
 
284 aa  159  7e-38  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_0146  binding-protein-dependent transport systems inner membrane component  36.52 
 
 
296 aa  152  1e-35  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.159688 
 
 
-
 
NC_007644  Moth_0466  binding-protein dependent transport system inner membrane protein  39.9 
 
 
262 aa  149  9e-35  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_3642  binding-protein-dependent transport systems inner membrane component  38.25 
 
 
275 aa  149  9e-35  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.142025  normal 
 
 
-
 
NC_008752  Aave_2968  binding-protein-dependent transport systems inner membrane component  35.37 
 
 
289 aa  148  1.0000000000000001e-34  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0761961  normal 
 
 
-
 
NC_012880  Dd703_2644  binding-protein-dependent transport systems inner membrane component  42.05 
 
 
282 aa  146  5e-34  Dickeya dadantii Ech703  Bacteria  normal  0.285231  n/a   
 
 
-
 
NC_011894  Mnod_0326  binding-protein-dependent transport systems inner membrane component  38.78 
 
 
257 aa  145  1e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.369486  n/a   
 
 
-
 
NC_007348  Reut_B4887  binding-protein dependent transport system inner membrane protein  42.68 
 
 
296 aa  145  1e-33  Ralstonia eutropha JMP134  Bacteria  normal  0.0123695  n/a   
 
 
-
 
NC_010511  M446_2276  binding-protein-dependent transport systems inner membrane component  38.78 
 
 
257 aa  143  5e-33  Methylobacterium sp. 4-46  Bacteria  normal  0.722283  normal  0.0991744 
 
 
-
 
NC_007948  Bpro_1046  binding-protein-dependent transport systems inner membrane component  38.86 
 
 
282 aa  135  8e-31  Polaromonas sp. JS666  Bacteria  normal  0.12004  normal  0.278615 
 
 
-
 
NC_011368  Rleg2_5005  binding-protein-dependent transport systems inner membrane component  31.88 
 
 
267 aa  134  1.9999999999999998e-30  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4930  binding-protein dependent transport system inner membrane protein  32.62 
 
 
267 aa  133  3.9999999999999996e-30  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_0155  binding-protein-dependent transport systems inner membrane component  37.96 
 
 
292 aa  133  5e-30  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_1429  binding-protein-dependent transport systems inner membrane component  42.41 
 
 
257 aa  126  5e-28  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.214609  n/a   
 
 
-
 
NC_013223  Dret_1646  binding-protein-dependent transport systems inner membrane component  38.67 
 
 
259 aa  125  7e-28  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6456  ABC transporter permease  40.82 
 
 
258 aa  125  8.000000000000001e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.405099  normal 
 
 
-
 
NC_011884  Cyan7425_3255  binding-protein-dependent transport systems inner membrane component  35.51 
 
 
294 aa  125  1e-27  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.106321 
 
 
-
 
NC_010501  PputW619_4981  binding-protein-dependent transport systems inner membrane component  30.87 
 
 
279 aa  117  1.9999999999999998e-25  Pseudomonas putida W619  Bacteria  normal  normal  0.588836 
 
 
-
 
NC_007492  Pfl01_0254  binding-protein dependent transport system inner membrane protein  31.72 
 
 
279 aa  116  3.9999999999999997e-25  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.57663 
 
 
-
 
NC_011729  PCC7424_0058  binding-protein-dependent transport systems inner membrane component  32.58 
 
 
275 aa  117  3.9999999999999997e-25  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009512  Pput_0246  binding-protein-dependent transport systems inner membrane component  30.26 
 
 
279 aa  116  5e-25  Pseudomonas putida F1  Bacteria  normal  0.0570948  normal  0.0921514 
 
 
-
 
NC_004578  PSPTO_5321  taurine ABC transporter, permease protein  30.13 
 
 
285 aa  114  2.0000000000000002e-24  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_4051  binding-protein-dependent transport systems inner membrane component  30.38 
 
 
273 aa  114  2.0000000000000002e-24  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.395379 
 
 
-
 
NC_009079  BMA10247_A0697  taurine ABC transporter, permease protein  30.63 
 
 
283 aa  114  3e-24  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2220  taurine ABC transporter, permease protein  30.49 
 
 
283 aa  114  3e-24  Burkholderia pseudomallei 668  Bacteria  normal  0.215273  n/a   
 
 
-
 
NC_008835  BMA10229_2019  taurine ABC transporter, permease protein  30.63 
 
 
285 aa  114  3e-24  Burkholderia mallei NCTC 10229  Bacteria  normal  0.484134  n/a   
 
 
-
 
NC_009636  Smed_1127  binding-protein-dependent transport systems inner membrane component  30.4 
 
 
267 aa  114  3e-24  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009078  BURPS1106A_A2133  taurine ABC transporter, permease protein  29.96 
 
 
283 aa  114  3e-24  Burkholderia pseudomallei 1106a  Bacteria  normal  0.186654  n/a   
 
 
-
 
NC_002947  PP_0231  binding-protein-dependent transport systems inner membrane component  29.82 
 
 
279 aa  113  4.0000000000000004e-24  Pseudomonas putida KT2440  Bacteria  normal  0.33405  hitchhiker  0.000710194 
 
 
-
 
NC_006349  BMAA1580  taurine ABC transporter, permease protein  30.09 
 
 
253 aa  113  4.0000000000000004e-24  Burkholderia mallei ATCC 23344  Bacteria  normal  0.477521  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0620  permease component of taurine ABC transporter  29.96 
 
 
253 aa  113  4.0000000000000004e-24  Burkholderia pseudomallei 1710b  Bacteria  decreased coverage  0.00192231  n/a   
 
 
-
 
NC_010322  PputGB1_0255  binding-protein-dependent transport systems inner membrane component  30.87 
 
 
279 aa  113  5e-24  Pseudomonas putida GB-1  Bacteria  normal  0.796344  normal 
 
 
-
 
NC_010725  Mpop_1211  binding-protein-dependent transport systems inner membrane component  31.09 
 
 
273 aa  112  9e-24  Methylobacterium populi BJ001  Bacteria  normal  0.132759  normal  0.452833 
 
 
-
 
NC_010511  M446_0397  binding-protein-dependent transport systems inner membrane component  29.23 
 
 
285 aa  112  1.0000000000000001e-23  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.987071 
 
 
-
 
NC_011004  Rpal_4641  binding-protein-dependent transport systems inner membrane component  32 
 
 
277 aa  112  1.0000000000000001e-23  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.750363  n/a   
 
 
-
 
NC_013595  Sros_3065  binding-protein-dependent transport systems inner membrane component  30.77 
 
 
280 aa  110  3e-23  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.228654 
 
 
-
 
NC_004311  BRA1188  taurine ABC transporter, permease protein  32.8 
 
 
250 aa  110  4.0000000000000004e-23  Brucella suis 1330  Bacteria  normal  0.0612406  n/a   
 
 
-
 
NC_007778  RPB_1488  binding-protein dependent transport system inner membrane protein  29.65 
 
 
280 aa  109  5e-23  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.106569  normal  0.790334 
 
 
-
 
NC_007778  RPB_4060  binding-protein dependent transport system inner membrane protein  30.43 
 
 
256 aa  109  6e-23  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1261  binding-protein-dependent transport systems inner membrane component  29.29 
 
 
273 aa  108  1e-22  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.306936 
 
 
-
 
NC_011757  Mchl_1422  binding-protein-dependent transport systems inner membrane component  29.29 
 
 
273 aa  108  1e-22  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_014150  Bmur_0403  binding-protein-dependent transport systems inner membrane component  32.97 
 
 
256 aa  108  1e-22  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_4564  taurine transporter subunit  27.95 
 
 
279 aa  107  2e-22  Serratia proteamaculans 568  Bacteria  normal  normal  0.746145 
 
 
-
 
NC_007516  Syncc9605_1078  ABC transporter, nitrate-like  29.05 
 
 
275 aa  107  4e-22  Synechococcus sp. CC9605  Bacteria  normal  0.193306  normal 
 
 
-
 
NC_013739  Cwoe_4844  binding-protein-dependent transport systems inner membrane component  30.65 
 
 
288 aa  106  4e-22  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009634  Mevan_0512  binding-protein-dependent transport systems inner membrane component  32.6 
 
 
253 aa  106  6e-22  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_010084  Bmul_0421  binding-protein-dependent transport systems inner membrane component  30.53 
 
 
321 aa  104  2e-21  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.905374 
 
 
-
 
NC_008752  Aave_0047  binding-protein-dependent transport systems inner membrane component  29.07 
 
 
306 aa  104  2e-21  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II0802  taurine ABC transporter, permease protein  29.15 
 
 
283 aa  103  3e-21  Burkholderia thailandensis E264  Bacteria  normal  0.207449  n/a   
 
 
-
 
NC_012917  PC1_1402  binding-protein-dependent transport systems inner membrane component  34.05 
 
 
257 aa  103  5e-21  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_2269  binding-protein-dependent transport systems inner membrane component  30.09 
 
 
321 aa  103  5e-21  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008062  Bcen_6102  binding-protein-dependent transport systems inner membrane component  29.28 
 
 
291 aa  103  5e-21  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1975  binding-protein-dependent transport systems inner membrane component  29.28 
 
 
291 aa  103  5e-21  Burkholderia cenocepacia HI2424  Bacteria  normal  0.690359  n/a   
 
 
-
 
NC_010682  Rpic_2883  binding-protein-dependent transport systems inner membrane component  29.65 
 
 
289 aa  102  6e-21  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_1800  binding-protein-dependent transport systems inner membrane component  31 
 
 
257 aa  102  6e-21  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_16930  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  29.55 
 
 
322 aa  102  7e-21  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.327  normal  0.410158 
 
 
-
 
NC_010508  Bcenmc03_2894  binding-protein-dependent transport systems inner membrane component  29.65 
 
 
321 aa  102  7e-21  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.438311 
 
 
-
 
NC_008542  Bcen2424_2884  binding-protein-dependent transport systems inner membrane component  30.09 
 
 
269 aa  102  8e-21  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_3299  putative sulfonate ABC transporter, permease protein  30.04 
 
 
286 aa  102  9e-21  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.201269  normal  0.262094 
 
 
-
 
NC_009708  YpsIP31758_1848  ABC transporter permease  28.99 
 
 
273 aa  101  1e-20  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1957  binding-protein-dependent transport systems inner membrane component  28.99 
 
 
273 aa  101  1e-20  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_2477  binding-protein-dependent transport systems inner membrane component  29.65 
 
 
289 aa  101  2e-20  Ralstonia pickettii 12D  Bacteria  normal  0.0948255  normal 
 
 
-
 
NC_008709  Ping_0049  ABC taurine transporter, binding protein inner membrane component  27.95 
 
 
330 aa  100  2e-20  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0656508 
 
 
-
 
NC_008786  Veis_1108  binding-protein-dependent transport systems inner membrane component  28.63 
 
 
255 aa  101  2e-20  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.135552 
 
 
-
 
NC_013441  Gbro_3478  binding-protein-dependent transport systems inner membrane component  30.32 
 
 
291 aa  100  3e-20  Gordonia bronchialis DSM 43247  Bacteria  normal  0.466071  n/a   
 
 
-
 
NC_010465  YPK_0260  taurine transporter subunit  27.51 
 
 
284 aa  100  3e-20  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_3936  taurine transporter subunit  27.51 
 
 
284 aa  100  3e-20  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3693  taurine transporter subunit  27.51 
 
 
284 aa  100  3e-20  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_4185  binding-protein-dependent transport systems inner membrane component  30 
 
 
283 aa  100  3e-20  Methylobacterium populi BJ001  Bacteria  normal  0.321257  normal 
 
 
-
 
NC_009428  Rsph17025_0761  binding-protein-dependent transport systems inner membrane component  27.16 
 
 
412 aa  100  4e-20  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A6225  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  28.76 
 
 
320 aa  100  4e-20  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0239  binding-protein-dependent transport systems inner membrane component  30.53 
 
 
265 aa  99.8  5e-20  Pseudomonas putida KT2440  Bacteria  normal  hitchhiker  0.00756787 
 
 
-
 
NC_012912  Dd1591_1673  binding-protein-dependent transport systems inner membrane component  29.02 
 
 
263 aa  99.8  5e-20  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_1736  binding-protein-dependent transport systems inner membrane component  28.94 
 
 
264 aa  99.8  7e-20  Serratia proteamaculans 568  Bacteria  normal  0.440066  normal  0.144233 
 
 
-
 
CP001637  EcDH1_3240  binding-protein-dependent transport systems inner membrane component  28.07 
 
 
275 aa  99.4  8e-20  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4861  binding-protein-dependent transport systems inner membrane component  28.95 
 
 
275 aa  99.4  8e-20  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0877464 
 
 
-
 
NC_010501  PputW619_4973  binding-protein-dependent transport systems inner membrane component  30.09 
 
 
265 aa  99.4  8e-20  Pseudomonas putida W619  Bacteria  normal  0.0722896  normal  0.022026 
 
 
-
 
NC_014150  Bmur_0154  binding-protein-dependent transport systems inner membrane component  30.96 
 
 
264 aa  99.4  8e-20  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0254  binding-protein-dependent transport systems inner membrane component  30.09 
 
 
265 aa  99  1e-19  Pseudomonas putida F1  Bacteria  normal  0.293544  normal  0.0445843 
 
 
-
 
NC_010172  Mext_3346  binding-protein-dependent transport systems inner membrane component  25.64 
 
 
291 aa  99  1e-19  Methylobacterium extorquens PA1  Bacteria  normal  0.252204  normal 
 
 
-
 
NC_007953  Bxe_C0085  taurine ABC transporter inner membrane protein  27.43 
 
 
283 aa  99  1e-19  Burkholderia xenovorans LB400  Bacteria  normal  0.664827  normal  0.135193 
 
 
-
 
NC_007953  Bxe_C0735  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  26.22 
 
 
273 aa  99  1e-19  Burkholderia xenovorans LB400  Bacteria  normal  0.714635  normal 
 
 
-
 
NC_010322  PputGB1_0263  binding-protein-dependent transport systems inner membrane component  30.09 
 
 
265 aa  98.6  1e-19  Pseudomonas putida GB-1  Bacteria  normal  0.791848  normal 
 
 
-
 
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