More than 300 homologs were found in PanDaTox collection
for query gene Ssed_3778 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_3778  response regulator  100 
 
 
629 aa  1300    Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_4060  response regulator receiver modulated metal dependent phosphohydrolase  52.67 
 
 
365 aa  278  2e-73  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0748941 
 
 
-
 
NC_011992  Dtpsy_0962  response regulator receiver modulated metal dependent phosphohydrolase  53.44 
 
 
377 aa  273  6e-72  Acidovorax ebreus TPSY  Bacteria  normal  0.115091  n/a   
 
 
-
 
NC_013512  Sdel_0912  metal-dependent phosphohydrolase HD sub domain protein  52.67 
 
 
371 aa  273  7e-72  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1044  response regulator receiver modulated metal dependent phosphohydrolase  53.44 
 
 
377 aa  272  1e-71  Acidovorax sp. JS42  Bacteria  normal  normal  0.0516082 
 
 
-
 
NC_009831  Ssed_2864  two-component response regulator  51.15 
 
 
383 aa  267  4e-70  Shewanella sediminis HAW-EB3  Bacteria  normal  0.384945  hitchhiker  0.000000030251 
 
 
-
 
NC_008752  Aave_2064  response regulator receiver modulated metal dependent phosphohydrolase  51.53 
 
 
395 aa  266  5.999999999999999e-70  Acidovorax citrulli AAC00-1  Bacteria  normal  0.18463  normal  0.544249 
 
 
-
 
NC_007298  Daro_3553  response regulator receiver  53.91 
 
 
384 aa  264  3e-69  Dechloromonas aromatica RCB  Bacteria  normal  0.739627  normal 
 
 
-
 
NC_011769  DvMF_1097  response regulator receiver modulated metal dependent phosphohydrolase  51.53 
 
 
391 aa  264  3e-69  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.151318 
 
 
-
 
NC_007348  Reut_B4068  response regulator receiver  54.55 
 
 
377 aa  263  8.999999999999999e-69  Ralstonia eutropha JMP134  Bacteria  normal  0.706307  n/a   
 
 
-
 
NC_008576  Mmc1_3072  response regulator receiver modulated metal dependent phosphohydrolase  52.74 
 
 
353 aa  255  1.0000000000000001e-66  Magnetococcus sp. MC-1  Bacteria  normal  hitchhiker  0.000480818 
 
 
-
 
NC_007298  Daro_3005  response regulator receiver  50.19 
 
 
361 aa  251  4e-65  Dechloromonas aromatica RCB  Bacteria  normal  0.931132  normal 
 
 
-
 
NC_010506  Swoo_2978  response regulator receiver modulated metal dependent phosphohydrolase  47.87 
 
 
369 aa  249  9e-65  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.806511 
 
 
-
 
NC_013223  Dret_2370  response regulator receiver modulated metal dependent phosphohydrolase  51.81 
 
 
370 aa  248  2e-64  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011312  VSAL_I2231  putative metal dependent phosphohydrolase  48.31 
 
 
440 aa  244  3.9999999999999997e-63  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_2589  response regulator receiver modulated metal dependent phosphohydrolase  48.3 
 
 
375 aa  242  2e-62  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0322399 
 
 
-
 
NC_007778  RPB_2330  metal dependent phosphohydrolase  49.6 
 
 
466 aa  240  5.999999999999999e-62  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.541081  normal  0.158055 
 
 
-
 
NC_009457  VC0395_A0913  hypothetical protein  51.6 
 
 
492 aa  236  8e-61  Vibrio cholerae O395  Bacteria  normal  0.512089  n/a   
 
 
-
 
NC_009457  VC0395_A0963  response regulator  45.63 
 
 
441 aa  233  1e-59  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1463  response regulator receiver modulated metal dependent phosphohydrolase  47.83 
 
 
364 aa  227  4e-58  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.404054 
 
 
-
 
NC_007519  Dde_1942  metal dependent phosphohydrolase  49.33 
 
 
363 aa  226  1e-57  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.284574  n/a   
 
 
-
 
NC_011662  Tmz1t_2833  response regulator receiver modulated metal dependent phosphohydrolase  47.71 
 
 
360 aa  226  1e-57  Thauera sp. MZ1T  Bacteria  normal  0.809465  n/a   
 
 
-
 
NC_011883  Ddes_1054  response regulator receiver modulated metal dependent phosphohydrolase  46.81 
 
 
359 aa  224  4e-57  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_0263  metal dependent phosphohydrolase  47.35 
 
 
579 aa  224  4.9999999999999996e-57  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0632  metal dependent phosphohydrolase  48.42 
 
 
654 aa  217  5e-55  Desulfomicrobium baculatum DSM 4028  Bacteria  hitchhiker  0.0000219793  n/a   
 
 
-
 
NC_009943  Dole_1420  putative PAS/PAC sensor protein  42.52 
 
 
543 aa  216  9e-55  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.108233  n/a   
 
 
-
 
NC_010524  Lcho_2452  response regulator receiver modulated metal dependent phosphohydrolase  43.77 
 
 
377 aa  215  1.9999999999999998e-54  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00101758 
 
 
-
 
NC_014148  Plim_0679  response regulator receiver  48.46 
 
 
337 aa  215  1.9999999999999998e-54  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.0836964  n/a   
 
 
-
 
NC_007298  Daro_3458  response regulator receiver  47.79 
 
 
365 aa  210  6e-53  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_1407  metal dependent phosphohydrolase  44.49 
 
 
691 aa  209  1e-52  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009943  Dole_1421  putative PAS/PAC sensor protein  45.29 
 
 
535 aa  207  5e-52  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.0232449  n/a   
 
 
-
 
NC_009943  Dole_1678  putative PAS/PAC sensor protein  43.62 
 
 
625 aa  206  8e-52  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.0321383  n/a   
 
 
-
 
NC_010814  Glov_2722  response regulator receiver modulated metal dependent phosphohydrolase  43.55 
 
 
378 aa  205  2e-51  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0881  putative PAS/PAC sensor protein  47.87 
 
 
537 aa  204  4e-51  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0055  metal dependent phosphohydrolase  46.38 
 
 
248 aa  204  5e-51  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_1373  response regulator receiver modulated metal dependent phosphohydrolase  43.16 
 
 
365 aa  203  7e-51  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_2455  response regulator receiver modulated metal dependent phosphohydrolase  41.27 
 
 
376 aa  203  9e-51  Magnetococcus sp. MC-1  Bacteria  normal  0.46136  normal  0.292815 
 
 
-
 
NC_007298  Daro_1897  metal-dependent phosphohydrolase  45.05 
 
 
671 aa  199  1.0000000000000001e-49  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_1904  response regulator receiver modulated metal dependent phosphohydrolase  42.66 
 
 
364 aa  198  2.0000000000000003e-49  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.430639  normal  0.0105316 
 
 
-
 
NC_013522  Taci_1744  response regulator receiver modulated metal dependent phosphohydrolase  46.32 
 
 
373 aa  196  1e-48  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2300  metal dependent phosphohydrolase  44.49 
 
 
407 aa  192  1e-47  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3239  metal dependent phosphohydrolase  47.33 
 
 
421 aa  191  4e-47  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3086  metal dependent phosphohydrolase  46.98 
 
 
421 aa  190  5.999999999999999e-47  Shewanella baltica OS155  Bacteria  normal  0.688804  n/a   
 
 
-
 
NC_009379  Pnuc_1166  metal dependent phosphohydrolase  44.39 
 
 
396 aa  190  7e-47  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3096  metal dependent phosphohydrolase  46.98 
 
 
421 aa  190  8e-47  Shewanella baltica OS185  Bacteria  normal  0.789641  n/a   
 
 
-
 
NC_011663  Sbal223_1281  metal dependent phosphohydrolase  45.96 
 
 
421 aa  188  2e-46  Shewanella baltica OS223  Bacteria  normal  normal  0.246487 
 
 
-
 
NC_013173  Dbac_2017  response regulator receiver modulated metal dependent phosphohydrolase  39.62 
 
 
379 aa  186  1.0000000000000001e-45  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.98115  n/a   
 
 
-
 
NC_007517  Gmet_2999  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  40 
 
 
361 aa  184  3e-45  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.669597 
 
 
-
 
NC_009656  PSPA7_5503  response regulator receiver  36.42 
 
 
393 aa  184  4.0000000000000006e-45  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_4196  response regulator receiver modulated metal dependent phosphohydrolase  44.89 
 
 
350 aa  182  1e-44  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_1387  HD domain-containing protein  44.08 
 
 
422 aa  182  2e-44  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_003910  CPS_4164  response regulator/phosphatase  40.08 
 
 
352 aa  181  4e-44  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1882  metal dependent phosphohydrolase  43.17 
 
 
428 aa  181  4e-44  Shewanella loihica PV-4  Bacteria  normal  normal  0.898808 
 
 
-
 
NC_008463  PA14_63210  putative two-component response regulator  41.1 
 
 
393 aa  179  1e-43  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_01756  Response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase)  44.23 
 
 
337 aa  178  2e-43  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.844049  n/a   
 
 
-
 
NC_008576  Mmc1_2378  periplasmic sensor signal transduction histidine kinase  35.84 
 
 
638 aa  177  6e-43  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.619157 
 
 
-
 
NC_008576  Mmc1_3408  response regulator receiver modulated metal dependent phosphohydrolase  38.46 
 
 
346 aa  176  8e-43  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0481  response regulator receiver modulated metal dependent phosphohydrolase  38.98 
 
 
348 aa  176  9.999999999999999e-43  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3549  response regulator receiver modulated metal dependent phosphohydrolase  38.56 
 
 
348 aa  174  2.9999999999999996e-42  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0716  response regulator receiver modulated metal dependent phosphohydrolase  42.92 
 
 
338 aa  174  3.9999999999999995e-42  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3306  response regulator receiver modulated metal dependent phosphohydrolase  42.92 
 
 
338 aa  174  3.9999999999999995e-42  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0187  response regulator receiver modulated metal dependent phosphohydrolase  38.75 
 
 
354 aa  174  3.9999999999999995e-42  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.0125166 
 
 
-
 
NC_008700  Sama_3111  response regulator receiver protein  41.26 
 
 
328 aa  174  3.9999999999999995e-42  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.0637882 
 
 
-
 
NC_008577  Shewana3_0479  response regulator receiver modulated metal dependent phosphohydrolase  37.92 
 
 
350 aa  173  7.999999999999999e-42  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_2545  metal dependent phosphohydrolase  41.48 
 
 
269 aa  173  9e-42  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007575  Suden_1924  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  41.92 
 
 
367 aa  172  1e-41  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.620973  n/a   
 
 
-
 
NC_008577  Shewana3_3418  response regulator receiver modulated metal dependent phosphohydrolase  42.01 
 
 
338 aa  172  1e-41  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2951  response regulator receiver protein  43.84 
 
 
340 aa  172  1e-41  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.129077 
 
 
-
 
NC_009438  Sputcn32_3141  response regulator receiver modulated metal dependent phosphohydrolase  43.38 
 
 
338 aa  172  2e-41  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2325  response regulator receiver modulated metal dependent phosphohydrolase  37.96 
 
 
362 aa  172  2e-41  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.663275  n/a   
 
 
-
 
NC_010644  Emin_0051  metal dependent phosphohydrolase  41.2 
 
 
407 aa  172  2e-41  Elusimicrobium minutum Pei191  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2902  response regulator receiver  38.46 
 
 
350 aa  171  4e-41  Dechloromonas aromatica RCB  Bacteria  normal  0.1984  normal  0.246098 
 
 
-
 
NC_011662  Tmz1t_1183  response regulator receiver modulated metal dependent phosphohydrolase  39.51 
 
 
363 aa  171  4e-41  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_3199  response regulator receiver modulated metal dependent phosphohydrolase  41.2 
 
 
339 aa  171  4e-41  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3334  response regulator receiver modulated metal dependent phosphohydrolase  45.63 
 
 
331 aa  170  6e-41  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0792  response regulator receiver modulated metal dependent phosphohydrolase  44.66 
 
 
331 aa  170  9e-41  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3231  response regulator receiver modulated metal dependent phosphohydrolase  44.66 
 
 
331 aa  170  9e-41  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_0629  response regulator receiver modulated metal dependent phosphohydrolase  41.85 
 
 
339 aa  169  1e-40  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3440  diguanylate cyclase  31.93 
 
 
557 aa  169  1e-40  Geobacter lovleyi SZ  Bacteria  normal  0.0125075  n/a   
 
 
-
 
NC_009654  Mmwyl1_0356  response regulator receiver modulated metal dependent phosphohydrolase  39.06 
 
 
360 aa  169  2e-40  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_1911  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  38.82 
 
 
268 aa  168  2e-40  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.0445959  n/a   
 
 
-
 
NC_008345  Sfri_2755  response regulator receiver modulated metal dependent phosphohydrolase  38.93 
 
 
520 aa  168  2e-40  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3165  response regulator receiver modulated metal dependent phosphohydrolase  41.83 
 
 
367 aa  169  2e-40  Magnetococcus sp. MC-1  Bacteria  normal  0.0569095  normal  0.0154692 
 
 
-
 
NC_007520  Tcr_2179  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  44.2 
 
 
348 aa  168  2.9999999999999998e-40  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.378064  n/a   
 
 
-
 
NC_011004  Rpal_0148  response regulator receiver modulated metal dependent phosphohydrolase  42.86 
 
 
385 aa  168  2.9999999999999998e-40  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.750781  n/a   
 
 
-
 
NC_008741  Dvul_3024  response regulator receiver modulated metal dependent phosphohydrolase  39.57 
 
 
363 aa  168  2.9999999999999998e-40  Desulfovibrio vulgaris DP4  Bacteria  normal  0.433593  n/a   
 
 
-
 
NC_004347  SO_0860  response regulator  41.1 
 
 
339 aa  167  5e-40  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011146  Gbem_0080  response regulator receiver modulated metal dependent phosphohydrolase  39.02 
 
 
357 aa  167  5e-40  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2505  response regulator receiver modulated metal dependent phosphohydrolase  42.65 
 
 
331 aa  167  5e-40  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_4270  response regulator receiver modulated metal dependent phosphohydrolase  41.15 
 
 
361 aa  167  5.9999999999999996e-40  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3676  response regulator receiver modulated metal dependent phosphohydrolase  40.54 
 
 
328 aa  167  5.9999999999999996e-40  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1546  response regulator receiver modulated metal dependent phosphohydrolase  40.4 
 
 
368 aa  166  8e-40  Geobacter lovleyi SZ  Bacteria  normal  0.61009  n/a   
 
 
-
 
NC_009654  Mmwyl1_1086  response regulator receiver modulated metal dependent phosphohydrolase  41.43 
 
 
331 aa  166  9e-40  Marinomonas sp. MWYL1  Bacteria  normal  0.226857  hitchhiker  0.0000000112469 
 
 
-
 
NC_013522  Taci_1739  response regulator receiver modulated metal dependent phosphohydrolase  36.68 
 
 
362 aa  166  1.0000000000000001e-39  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  0.0711596  n/a   
 
 
-
 
NC_007298  Daro_3285  response regulator receiver  39.22 
 
 
362 aa  166  1.0000000000000001e-39  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_4003  response regulator  41.89 
 
 
357 aa  165  2.0000000000000002e-39  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010718  Nther_2799  metal dependent phosphohydrolase  42.86 
 
 
462 aa  165  2.0000000000000002e-39  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_0063  response regulator receiver modulated metal dependent phosphohydrolase  38.62 
 
 
357 aa  165  2.0000000000000002e-39  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.56416e-22 
 
 
-
 
NC_007954  Sden_3723  response regulator receiver  43.48 
 
 
338 aa  166  2.0000000000000002e-39  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_1041  response regulator receiver protein  38.98 
 
 
365 aa  165  2.0000000000000002e-39  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
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