| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3778 |
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| Symbol | |
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| ID | 5609957 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4603411 |
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| End bp | 4605300 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934732 |
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| Product | response regulator |
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| Protein accession | YP_001475510 |
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| Protein GI | 157376910 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATATTTA GTAACCGAGT CGGCGATAGG GATAAACGCT TTTCTGGTTT TAATCGACTG
GTTCGGGCTC GTTTTATTGC GTTATTTATT CCCCTGACTC TGCTCAATAT CGCCGCATTA
ATGCTGGCAA ACTCCCTGTA TATTAATGTC GAACAAGCCA AGCAGCAGGC CTTAGTTCAA
GCCGCCATAG AGGTCGGTAC CAATTTAGCT CAACATGATC TGACGACTGT CATGTCTCAC
CTGGAGTTTT TAACCGCCAG TGAAAATGTT GAAAGCTATT TAGATAATGG AATCGATGAT
AGTAAAGCGC ATATCGAGAG GGAGTTTCTT AATTTAGCCA ATACCAGTCA ACTCTATGAT
CAAATTCGCC TTATCTCTCC CTCCGGAATA GAGCTGGTTC GGATCGACTA TTTCGATGAG
CAAGCGGTCG CCGTTGTCCC CGAGCTGTTG CAAGACAAGT CAAATCGATA CTACTTTCAG
GAAGCTGCCG CGATTACCAC AGATAAGATG TATATCTCGG CGCTCGATCT CAATGTGGAA
AATGGCGTTA TCGAACAGCC CCTGAAACCT ATGATCCGAT TTGCTAAGCC ACTTAAAGAT
GAAAATGGAG AGTTAAGAGG GGTTATCGTT CTAAACTATT TCGCCAATTT ATTGCTCGAC
AAGTTCAGAA ACCAGATGAT GTTTGCTCCG GGAGAGGGGG CACTGTTGAA TAAGGATGGC
TACTGGCTAT CGAGCAGGGA TCCCTCTCAG GAGTGGGGGT TTATGCTCGA TCATAAGCTG
AGTTTCGGTA CCGATAGTCC GGAGCTTTGG CAGACCATAT CCCTGGCCGA GAAAGGCAGC
GTTGAGAATT CAGATGGCCT GGTTACCTTC GCCACAGTGC ACCCCATTAA AGACATTGAT
AAAAAAGTGG CCAATAGGGA TCATTTTATC GATGAGTGGC GGATCATCAT AGTTAATACC
TATTGGGGGT TAGGTCCTGC TTTAGTCTTA TCTAAGATTG AGTTTTTGTA TCCGGCGTTG
ATCATCTACC CTATAGGATT GATACTCCTC TGGTTTTGGG CCCGGGCTTC AGTCGGTCGG
AAGTGTGCCG AGCGGGAACT GAAAAAACTC AATAAAACGC TGACACTAAG AGTCGCGGAG
CGAACTAAGG AGCTTGCCGT TATTAAGGAT GTGACTATTC TCAGTATGGC TACTCTGGCC
GAGACTCGAG ATAACGAAAC CGGGCAGCAT CTCAGACGGA CACAGACCTA TGTAAAACTG
CTGGCAGAAG AGCTACAAGA TCATCCTGAT TTTCACGATT TTCTGTCGGA CAAAAATATA
GATTTACTGT ATAAGTCTGC CCCGCTTCAT GACATCGGCA AGGTGGGAAT ACCCGATGAT
ATCTTACTGA AACCCGCCAA ACTGACCGAT TTTGAATTCG AGATAATGAA GCGACATACA
ACCTATGGCA GTAACGCGAT TAGCTCCTCA ATTCATACGT TAACCAGTGA GCTGGCAGAA
AATGATGGCC CGACATTTTT ACAGTTTGCT CAGGATATTG CTCATTACCA TCATGAAAAG
TGGGACGGTA GAGGGTATCC AAATGGTTTG TCGGGTGATG ATATCCCTAT TGCGGCTCGG
ATCATGGCGA TTGCCGATGT ATTCGATGCG CTCTCATGTA AGAGGGTTTA TAAGGGGGCT
TTCAGTCGCG ATAAGACTGA AAGCATTATG CTCGAAGGGC GCGGTACCCA TTTTGATCCA
AGAATGATCG ATGCTTTTTG CAGGGTTAAT GATTCATTCT GGGAGGTAAA AGCTCTGTTT
GAAGATGAGC CCCCTGAAGT CACTAATGGC TGCATTGAGC ATTTTCCAGT GGAGTATTCT
CAACTGATTA ATTTTGGTCA AGGTATTTAG
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| Protein sequence | MIFSNRVGDR DKRFSGFNRL VRARFIALFI PLTLLNIAAL MLANSLYINV EQAKQQALVQ
AAIEVGTNLA QHDLTTVMSH LEFLTASENV ESYLDNGIDD SKAHIEREFL NLANTSQLYD
QIRLISPSGI ELVRIDYFDE QAVAVVPELL QDKSNRYYFQ EAAAITTDKM YISALDLNVE
NGVIEQPLKP MIRFAKPLKD ENGELRGVIV LNYFANLLLD KFRNQMMFAP GEGALLNKDG
YWLSSRDPSQ EWGFMLDHKL SFGTDSPELW QTISLAEKGS VENSDGLVTF ATVHPIKDID
KKVANRDHFI DEWRIIIVNT YWGLGPALVL SKIEFLYPAL IIYPIGLILL WFWARASVGR
KCAERELKKL NKTLTLRVAE RTKELAVIKD VTILSMATLA ETRDNETGQH LRRTQTYVKL
LAEELQDHPD FHDFLSDKNI DLLYKSAPLH DIGKVGIPDD ILLKPAKLTD FEFEIMKRHT
TYGSNAISSS IHTLTSELAE NDGPTFLQFA QDIAHYHHEK WDGRGYPNGL SGDDIPIAAR
IMAIADVFDA LSCKRVYKGA FSRDKTESIM LEGRGTHFDP RMIDAFCRVN DSFWEVKALF
EDEPPEVTNG CIEHFPVEYS QLINFGQGI
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