More than 300 homologs were found in PanDaTox collection
for query gene RPC_3206 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_0669  putative acyl-CoA dehydrogenase  85.19 
 
 
389 aa  704    Bradyrhizobium sp. BTAi1  Bacteria  normal  0.282449  normal  0.0349391 
 
 
-
 
NC_007778  RPB_3266  Acyl-CoA dehydrogenase-like  86.65 
 
 
385 aa  709    Rhodopseudomonas palustris HaA2  Bacteria  normal  0.194467  normal  0.933861 
 
 
-
 
NC_011004  Rpal_2430  acyl-CoA dehydrogenase domain protein  86.39 
 
 
384 aa  701    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.303023  n/a   
 
 
-
 
NC_007925  RPC_3206  acyl-CoA dehydrogenase-like  100 
 
 
386 aa  797    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.518782 
 
 
-
 
NC_007958  RPD_2199  acyl-CoA dehydrogenase-like  88.22 
 
 
384 aa  715    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.539227 
 
 
-
 
NC_009078  BURPS1106A_A2775  acyl-CoA dehydrogenase  72.18 
 
 
383 aa  578  1e-164  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1150  acyl-CoA dehydrogenase  72.18 
 
 
383 aa  578  1e-164  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2930  acyl-CoA dehydrogenase  72.18 
 
 
383 aa  578  1e-164  Burkholderia pseudomallei 668  Bacteria  normal  0.168413  n/a   
 
 
-
 
NC_010682  Rpic_0107  acyl-CoA dehydrogenase domain protein  70.68 
 
 
385 aa  573  1.0000000000000001e-162  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_0114  acyl-CoA dehydrogenase domain protein  70.68 
 
 
385 aa  573  1.0000000000000001e-162  Ralstonia pickettii 12D  Bacteria  normal  0.773913  normal  0.835014 
 
 
-
 
NC_007650  BTH_II0288  acyl-CoA dehydrogenase  70.87 
 
 
383 aa  573  1.0000000000000001e-162  Burkholderia thailandensis E264  Bacteria  normal  0.553165  n/a   
 
 
-
 
NC_007908  Rfer_2817  acyl-CoA dehydrogenase-like  68.75 
 
 
383 aa  566  1e-160  Rhodoferax ferrireducens T118  Bacteria  normal  0.0246434  n/a   
 
 
-
 
NC_007492  Pfl01_3948  Acyl-CoA dehydrogenase-like  66.75 
 
 
385 aa  558  1e-158  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.54725  normal 
 
 
-
 
NC_008740  Maqu_2805  acyl-CoA dehydrogenase domain-containing protein  67.02 
 
 
386 aa  559  1e-158  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2692  acyl-CoA dehydrogenase domain-containing protein  67.54 
 
 
386 aa  556  1e-157  Pseudomonas mendocina ymp  Bacteria  normal  0.0824192  normal  0.331355 
 
 
-
 
NC_008463  PA14_26700  putative acyl-CoA dehydrogenase  67.28 
 
 
386 aa  553  1e-156  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.472617  normal 
 
 
-
 
NC_013440  Hoch_4452  acyl-CoA dehydrogenase domain protein  68.77 
 
 
384 aa  550  1e-155  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_2265  putative acyl-CoA dehydrogenase  66.75 
 
 
386 aa  550  1e-155  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_0324  acyl-CoA dehydrogenase domain protein  67.72 
 
 
386 aa  536  1e-151  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_0315  acyl-CoA dehydrogenase-like  64.83 
 
 
391 aa  529  1e-149  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_1896  acyl-CoA dehydrogenase domain-containing protein  64.34 
 
 
394 aa  512  1e-144  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.398062 
 
 
-
 
NC_008786  Veis_4186  acyl-CoA dehydrogenase domain-containing protein  64.32 
 
 
388 aa  508  9.999999999999999e-143  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.245647 
 
 
-
 
NC_007348  Reut_B4462  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal  65.36 
 
 
386 aa  504  1e-141  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_1722  acyl-CoA dehydrogenase-like protein  64.32 
 
 
388 aa  497  1e-139  Cupriavidus metallidurans CH34  Bacteria  normal  0.0209372  normal 
 
 
-
 
NC_008786  Veis_2414  acyl-CoA dehydrogenase domain-containing protein  65.09 
 
 
385 aa  489  1e-137  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.228381  normal 
 
 
-
 
NC_009972  Haur_4761  acyl-CoA dehydrogenase domain-containing protein  58.2 
 
 
386 aa  462  1e-129  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013124  Afer_1029  acyl-CoA dehydrogenase domain protein  53.81 
 
 
381 aa  393  1e-108  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.042764  n/a   
 
 
-
 
NC_013739  Cwoe_1590  acyl-CoA dehydrogenase domain protein  44.33 
 
 
396 aa  337  1.9999999999999998e-91  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.663907 
 
 
-
 
NC_009675  Anae109_1179  acyl-CoA dehydrogenase domain-containing protein  44.15 
 
 
381 aa  320  3.9999999999999996e-86  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.532385 
 
 
-
 
NC_011145  AnaeK_1192  acyl-CoA dehydrogenase domain protein  43.09 
 
 
385 aa  314  9.999999999999999e-85  Anaeromyxobacter sp. K  Bacteria  normal  0.0644386  n/a   
 
 
-
 
NC_007760  Adeh_1132  Acyl-CoA dehydrogenase, type 1  43.09 
 
 
385 aa  313  2.9999999999999996e-84  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_1261  acyl-CoA dehydrogenase domain protein  42.82 
 
 
385 aa  312  6.999999999999999e-84  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.403217  n/a   
 
 
-
 
NC_009943  Dole_0626  acyl-CoA dehydrogenase domain-containing protein  40.16 
 
 
386 aa  286  5e-76  Desulfococcus oleovorans Hxd3  Bacteria  decreased coverage  0.000000265202  n/a   
 
 
-
 
NC_007950  Bpro_5265  acyl-CoA dehydrogenase-like  41.27 
 
 
381 aa  283  4.0000000000000003e-75  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_1226  acyl-CoA dehydrogenase domain protein  38.24 
 
 
381 aa  279  6e-74  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4696  Acyl-CoA dehydrogenase-like  39.1 
 
 
378 aa  276  4e-73  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0700778  normal  0.0611001 
 
 
-
 
NC_009656  PSPA7_5007  acyl-CoA dehydrogenase  38.56 
 
 
378 aa  276  6e-73  Pseudomonas aeruginosa PA7  Bacteria  normal  0.284133  n/a   
 
 
-
 
NC_013411  GYMC61_2106  acyl-CoA dehydrogenase domain protein  37.97 
 
 
381 aa  275  7e-73  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_1015  acyl-CoA dehydrogenase domain-containing protein  39.05 
 
 
381 aa  271  2e-71  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.629454 
 
 
-
 
NC_014165  Tbis_0526  acyl-CoA dehydrogenase domain-containing protein  40.63 
 
 
381 aa  270  2.9999999999999997e-71  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0149792 
 
 
-
 
NC_014210  Ndas_4164  acyl-CoA dehydrogenase domain protein  39.95 
 
 
380 aa  270  4e-71  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_00085  probable acyl-CoA dehydrogenase  36.34 
 
 
386 aa  268  1e-70  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A2768  putative acyl-CoA dehydrogenase, long- chain specific  39.89 
 
 
391 aa  267  2e-70  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.466839 
 
 
-
 
NC_013947  Snas_3899  acyl-CoA dehydrogenase domain-containing protein  40.21 
 
 
380 aa  266  4e-70  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.601021  normal 
 
 
-
 
NC_009439  Pmen_0898  acyl-CoA dehydrogenase domain-containing protein  36.7 
 
 
379 aa  266  5.999999999999999e-70  Pseudomonas mendocina ymp  Bacteria  normal  0.592416  normal 
 
 
-
 
NC_013440  Hoch_5486  acyl-CoA dehydrogenase domain protein  39.58 
 
 
381 aa  265  1e-69  Haliangium ochraceum DSM 14365  Bacteria  normal  0.361587  normal  0.275815 
 
 
-
 
NC_009523  RoseRS_2850  acyl-CoA dehydrogenase domain-containing protein  39.26 
 
 
381 aa  263  3e-69  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_2461  acyl-CoA dehydrogenase domain-containing protein  38.99 
 
 
381 aa  259  4e-68  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.160964  normal 
 
 
-
 
NC_013510  Tcur_1158  acyl-CoA dehydrogenase domain protein  36.94 
 
 
380 aa  258  1e-67  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2724  putative acyl-CoA dehydrogenase  40 
 
 
379 aa  258  1e-67  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009076  BURPS1106A_0069  acyl-CoA dehydrogenase  35.9 
 
 
378 aa  257  3e-67  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_3159  acyl-CoA dehydrogenase-like protein  37.94 
 
 
384 aa  256  3e-67  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_007434  BURPS1710b_0285  putative acyl-CoA dehydrogenase  35.9 
 
 
430 aa  256  4e-67  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2640  acyl-CoA dehydrogenase domain-containing protein  39.15 
 
 
382 aa  256  4e-67  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009074  BURPS668_0071  acyl-CoA dehydrogenase  35.9 
 
 
378 aa  256  4e-67  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_44590  putative acyl-CoA dehydrogenase  39.15 
 
 
382 aa  256  5e-67  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.115887 
 
 
-
 
NC_008785  BMASAVP1_A3482  long-chain specific acyl-CoA dehydrogenase  35.64 
 
 
378 aa  255  9e-67  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2728  long-chain specific acyl-CoA dehydrogenase  35.64 
 
 
378 aa  255  9e-67  Burkholderia mallei NCTC 10247  Bacteria  normal  0.890874  n/a   
 
 
-
 
NC_008836  BMA10229_A1825  acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal  35.64 
 
 
378 aa  255  9e-67  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_4090  acyl-CoA dehydrogenase domain-containing protein  35.62 
 
 
380 aa  255  1.0000000000000001e-66  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0060  acyl-CoA dehydrogenase  35.64 
 
 
378 aa  255  1.0000000000000001e-66  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_3740  acyl-CoA dehydrogenase-like protein  37.5 
 
 
382 aa  254  1.0000000000000001e-66  Mycobacterium sp. MCS  Bacteria  normal  0.421985  n/a   
 
 
-
 
NC_008705  Mkms_3813  acyl-CoA dehydrogenase domain-containing protein  37.5 
 
 
382 aa  254  1.0000000000000001e-66  Mycobacterium sp. KMS  Bacteria  normal  normal  0.285243 
 
 
-
 
NC_008740  Maqu_2118  acyl-CoA dehydrogenase domain-containing protein  36.44 
 
 
382 aa  254  2.0000000000000002e-66  Marinobacter aquaeolei VT8  Bacteria  normal  0.0463825  n/a   
 
 
-
 
NC_007908  Rfer_2752  acyl-CoA dehydrogenase-like  36.75 
 
 
387 aa  254  2.0000000000000002e-66  Rhodoferax ferrireducens T118  Bacteria  normal  0.171242  n/a   
 
 
-
 
NC_008740  Maqu_3438  acyl-CoA dehydrogenase domain-containing protein  36.87 
 
 
379 aa  254  2.0000000000000002e-66  Marinobacter aquaeolei VT8  Bacteria  normal  0.0342749  n/a   
 
 
-
 
NC_012857  Rpic12D_3850  acyl-CoA dehydrogenase domain protein  36.51 
 
 
380 aa  253  3e-66  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3752  acyl-CoA dehydrogenase domain-containing protein  37.5 
 
 
382 aa  253  3e-66  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4927  acyl-CoA dehydrogenase domain protein  36.51 
 
 
380 aa  253  3e-66  Ralstonia pickettii 12J  Bacteria  normal  normal  0.905693 
 
 
-
 
NC_009921  Franean1_4286  acyl-CoA dehydrogenase domain-containing protein  36.87 
 
 
379 aa  253  5.000000000000001e-66  Frankia sp. EAN1pec  Bacteria  normal  normal  0.330894 
 
 
-
 
NC_009656  PSPA7_3798  putative acyl-CoA dehydrogenase  38.62 
 
 
382 aa  253  5.000000000000001e-66  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_0451  acyl-CoA dehydrogenase domain protein  37.01 
 
 
382 aa  253  5.000000000000001e-66  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_0132  long-chain acyl-CoA dehydrogenase  36.86 
 
 
384 aa  250  2e-65  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_0120  acyl-CoA dehydrogenase domain protein  35.79 
 
 
384 aa  250  3e-65  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_2118  acyl-CoA dehydrogenase domain-containing protein  34.92 
 
 
380 aa  249  7e-65  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.438957 
 
 
-
 
NC_013922  Nmag_3108  acyl-CoA dehydrogenase domain protein  35.81 
 
 
383 aa  249  8e-65  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_007333  Tfu_1512  putative acyl-CoA dehydrogenase  38.89 
 
 
382 aa  248  2e-64  Thermobifida fusca YX  Bacteria  normal  0.116644  n/a   
 
 
-
 
NC_007348  Reut_B4166  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal  37.67 
 
 
379 aa  247  2e-64  Ralstonia eutropha JMP134  Bacteria  normal  0.503131  n/a   
 
 
-
 
NC_007953  Bxe_C0602  putative acyl-CoA dehydrogenase  35.9 
 
 
374 aa  247  2e-64  Burkholderia xenovorans LB400  Bacteria  normal  0.0892135  normal  0.143827 
 
 
-
 
NC_008726  Mvan_2439  long-chain-acyl-CoA dehydrogenase  36.68 
 
 
391 aa  247  2e-64  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0991983  normal  0.0569635 
 
 
-
 
NC_013757  Gobs_3923  acyl-CoA dehydrogenase domain protein  36.68 
 
 
381 aa  247  3e-64  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_0443  acyl-CoA dehydrogenase domain protein  36.75 
 
 
385 aa  246  4.9999999999999997e-64  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_0103  acyl-CoA dehydrogenase domain-containing protein  35.26 
 
 
384 aa  246  6e-64  Acidovorax sp. JS42  Bacteria  normal  normal  0.250582 
 
 
-
 
NC_008726  Mvan_4587  acyl-CoA dehydrogenase domain-containing protein  34.92 
 
 
380 aa  246  6.999999999999999e-64  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_4102  acyl-CoA dehydrogenase domain-containing protein  37.17 
 
 
388 aa  245  9.999999999999999e-64  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.757866  normal  0.974192 
 
 
-
 
NC_007948  Bpro_3014  acyl-CoA dehydrogenase-like  36.22 
 
 
389 aa  244  9.999999999999999e-64  Polaromonas sp. JS666  Bacteria  normal  0.51583  normal  0.368309 
 
 
-
 
NC_007492  Pfl01_1809  Acyl-CoA dehydrogenase-like  38.1 
 
 
382 aa  244  1.9999999999999999e-63  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_3613  acyl-CoA dehydrogenase domain-containing protein  34.83 
 
 
382 aa  244  1.9999999999999999e-63  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_0697  acyl-CoA dehydrogenase domain-containing protein  35.64 
 
 
380 aa  242  9e-63  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_3863  acyl-CoA dehydrogenase domain-containing protein  34.13 
 
 
376 aa  242  9e-63  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_5152  putative acyl-CoA dehydrogenase  37.99 
 
 
381 aa  242  9e-63  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.276621 
 
 
-
 
NC_013743  Htur_0919  acyl-CoA dehydrogenase domain protein  34.48 
 
 
383 aa  241  1e-62  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_010338  Caul_1892  acyl-CoA dehydrogenase domain-containing protein  34.04 
 
 
378 aa  241  1e-62  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_4078  acyl-CoA dehydrogenase-like protein  34.13 
 
 
380 aa  242  1e-62  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_4308  acyl-CoA dehydrogenase domain-containing protein  34.13 
 
 
380 aa  242  1e-62  Mycobacterium sp. JLS  Bacteria  normal  0.828452  normal 
 
 
-
 
NC_008699  Noca_0271  acyl-CoA dehydrogenase domain-containing protein  35.71 
 
 
381 aa  242  1e-62  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4154  acyl-CoA dehydrogenase domain-containing protein  34.13 
 
 
380 aa  242  1e-62  Mycobacterium sp. KMS  Bacteria  normal  normal  0.815208 
 
 
-
 
NC_008726  Mvan_0906  acyl-CoA dehydrogenase domain-containing protein  36.51 
 
 
380 aa  241  1e-62  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_4558  acyl-CoA dehydrogenase domain-containing protein  36.56 
 
 
393 aa  240  2e-62  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0623628 
 
 
-
 
NC_008726  Mvan_4205  acyl-CoA dehydrogenase domain-containing protein  37.11 
 
 
382 aa  241  2e-62  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>