| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5152 |
|---|
| Symbol | |
|---|
| ID | 4042013 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | - |
|---|
| Start bp | 1850580 |
|---|
| End bp | 1851725 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637980570 |
|---|
| Product | putative acyl-CoA dehydrogenase |
|---|
| Protein accession | YP_587280 |
|---|
| Protein GI | 94314071 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.276621 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAACC CTTTGCCCTG GATCAGCGGC GACCTGGAGA TCTTCCAGGA TGGCATTCGC
AAGTTCGTCG AGCGCGAGCT TGCACCCAAC GAGGATCGTT GGTGGAAGCA GCAGTACATC
GACCGTGAAG TCTGGTACAA GGCAGGCGAG ATGGGGATGC TCTGCGCAAG CATTCCCGAA
GAGTACGGTG GCGGCGGCGG GACGTTCGCC CACGAGGCCA TCATCACGAT GGAACAGGGG
CGGGCCGGCG TGAGCAGCCT CGGCACCAAC GTGCACAGCG GCATCGTTGC CCACTACATC
CTGCGCTACG GCACTGAGGA ACAGAAACGC AAGTGGCTGC CGAAGATGGC GACGGGCGAG
CTGGTTGCCG CCATCGCCAT GTCGGAACCC GGCGCGGGTT CGGATCTCAA GAGCGTCAAG
ACGCGCGCGC TGAAGGAGGG CGACAGCTAC GTCATCAATG GTTCGAAGAC CTTCATCACG
AACGGCTATC ACGCGAACCT GATCCTGGTG ATCTGCAAGA CCGATCCCGA GGCGGGCGCG
CGCGGCGTGT CGATCGTCGT GGTCGAGACC GATGGCCAGC AGGGATTCCG CCGCGGTCGC
ATCCTGGAAA AGATGGGGCA GAAGGGCCAG GACACCGCCG AGTTGTTCTT CGACGACATG
CGCGTGCCGT GCGCGAACCT GCTCGGCACC GAAGAGGGCA AGGGCTTCTA CCAGCTCATG
CAACAGTTGC CGCAGGAGCG CATGATCATC GCGCTGGGCG CGTTGGCATC GATGGAGCGC
GCGCTGGGCC TGACGATCGA GTACGTGCGC AATCGCAAGG TCTTCGGCGA ATCACTGATC
GAGCTGCAGA ACACCCGATT CCGGTTGGCG GAGTGCAAGA CCAACGCGAC CATCGCGCGC
AGCTTCGTCA ACGATTGCAT GGAGAAAATC CTGCGTGGGG AGCTGGACCC CGGCACGGCG
GCGATGGCCA AGTGGTGGTG CACGCAGCGT TCGTGCGAGA TCATCGACGA ATGCCTGCAG
TTGCACGGCG GCTATGGCTA CATGATGGAG TACCCGATTG CGCGGATGTA TGTGAACGCG
CGGGTCAGCA AGATCTACGG TGGCTCGAAC GAGATCATGA AGGAACTGAT CGCGCGCGAA
CTCTGA
|
|---|
| Protein sequence | MTNPLPWISG DLEIFQDGIR KFVERELAPN EDRWWKQQYI DREVWYKAGE MGMLCASIPE
EYGGGGGTFA HEAIITMEQG RAGVSSLGTN VHSGIVAHYI LRYGTEEQKR KWLPKMATGE
LVAAIAMSEP GAGSDLKSVK TRALKEGDSY VINGSKTFIT NGYHANLILV ICKTDPEAGA
RGVSIVVVET DGQQGFRRGR ILEKMGQKGQ DTAELFFDDM RVPCANLLGT EEGKGFYQLM
QQLPQERMII ALGALASMER ALGLTIEYVR NRKVFGESLI ELQNTRFRLA ECKTNATIAR
SFVNDCMEKI LRGELDPGTA AMAKWWCTQR SCEIIDECLQ LHGGYGYMME YPIARMYVNA
RVSKIYGGSN EIMKELIARE L
|
|---|
| |