More than 300 homologs were found in PanDaTox collection
for query gene RPB_4675 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_5285  acyl-CoA dehydrogenase domain protein  94.64 
 
 
394 aa  748    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.244143  n/a   
 
 
-
 
NC_009485  BBta_0702  putative acyl-CoA dehydrogenase  83.93 
 
 
394 aa  674    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4675  Acyl-CoA dehydrogenase-like  100 
 
 
397 aa  819    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_4384  acyl-CoA dehydrogenase-like  95.92 
 
 
398 aa  759    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.292167  normal 
 
 
-
 
NC_007974  Rmet_4574  acyl-CoA dehydrogenase protein  70.08 
 
 
394 aa  560  1e-158  Cupriavidus metallidurans CH34  Bacteria  normal  0.0289661  normal  0.010057 
 
 
-
 
NC_007794  Saro_0999  acyl-CoA dehydrogenase-like  66.58 
 
 
386 aa  533  1e-150  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.676342  n/a   
 
 
-
 
NC_008048  Sala_3077  acyl-CoA dehydrogenase-like protein  65.22 
 
 
393 aa  528  1e-149  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_008347  Mmar10_1654  acyl-CoA dehydrogenase domain-containing protein  64.62 
 
 
388 aa  511  1e-144  Maricaulis maris MCS10  Bacteria  normal  normal  0.343855 
 
 
-
 
NC_009719  Plav_2205  acyl-CoA dehydrogenase domain-containing protein  58.29 
 
 
397 aa  452  1.0000000000000001e-126  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.0291092  normal 
 
 
-
 
NC_010338  Caul_1447  acyl-CoA dehydrogenase domain-containing protein  54.48 
 
 
401 aa  407  1.0000000000000001e-112  Caulobacter sp. K31  Bacteria  normal  normal  0.0993289 
 
 
-
 
NC_009901  Spea_2143  acyl-CoA dehydrogenase domain-containing protein  44.86 
 
 
412 aa  356  2.9999999999999997e-97  Shewanella pealeana ATCC 700345  Bacteria  normal  0.485337  n/a   
 
 
-
 
NC_007651  BTH_I1078  acyl-CoA dehydrogenase domain-containing protein  39.6 
 
 
398 aa  281  2e-74  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0233  pimeloyl-CoA dehydrogenase, large subunit  39.95 
 
 
400 aa  280  3e-74  Methylobacterium sp. 4-46  Bacteria  normal  0.172287  normal  0.0105147 
 
 
-
 
NC_003295  RSc2045  putative acyl-CoA dehydrogenase oxidoreductase protein  39.35 
 
 
398 aa  278  2e-73  Ralstonia solanacearum GMI1000  Bacteria  normal  0.257916  normal  0.141872 
 
 
-
 
NC_007347  Reut_A0978  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  39.7 
 
 
400 aa  277  3e-73  Ralstonia eutropha JMP134  Bacteria  normal  0.915118  n/a   
 
 
-
 
NC_010681  Bphyt_1362  acyl-CoA dehydrogenase domain protein  39.65 
 
 
398 aa  276  3e-73  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0703001  decreased coverage  0.000728046 
 
 
-
 
NC_010508  Bcenmc03_2256  acyl-CoA dehydrogenase domain-containing protein  39.6 
 
 
398 aa  276  4e-73  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_2270  acyl-CoA dehydrogenase domain-containing protein  39.85 
 
 
398 aa  276  5e-73  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_2149  acyl-CoA dehydrogenase domain-containing protein  39.85 
 
 
398 aa  276  5e-73  Burkholderia ambifaria MC40-6  Bacteria  normal  0.324611  normal  0.360268 
 
 
-
 
NC_012856  Rpic12D_1874  acyl-CoA dehydrogenase domain protein  38.85 
 
 
398 aa  275  8e-73  Ralstonia pickettii 12D  Bacteria  normal  normal  0.400233 
 
 
-
 
NC_011894  Mnod_5441  pimeloyl-CoA dehydrogenase, large subunit  39.01 
 
 
402 aa  275  8e-73  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.504048  n/a   
 
 
-
 
NC_007510  Bcep18194_A5560  Acyl-CoA dehydrogenase  39.35 
 
 
398 aa  275  9e-73  Burkholderia sp. 383  Bacteria  normal  normal  0.198235 
 
 
-
 
NC_008060  Bcen_1620  acyl-CoA dehydrogenase-like  39.35 
 
 
398 aa  275  1.0000000000000001e-72  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_2232  acyl-CoA dehydrogenase domain-containing protein  39.35 
 
 
398 aa  275  1.0000000000000001e-72  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2197  acyl-CoA dehydrogenase domain protein  37.28 
 
 
398 aa  274  2.0000000000000002e-72  Ralstonia pickettii 12J  Bacteria  normal  normal  0.34264 
 
 
-
 
NC_007951  Bxe_A3192  putative pimeloyl-CoA dehydrogenase (large subunit), PimC-like  40.6 
 
 
398 aa  273  3e-72  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0944  acyl-CoA dehydrogenase-like protein  39.15 
 
 
400 aa  273  3e-72  Cupriavidus metallidurans CH34  Bacteria  normal  0.671788  normal 
 
 
-
 
NC_009074  BURPS668_1307  acyl-CoA dehydrogenase  39.45 
 
 
398 aa  273  4.0000000000000004e-72  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_1453  putative acyl-CoA dehydrogenase family protein  39.45 
 
 
398 aa  273  5.000000000000001e-72  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A0720  acyl-CoA dehydrogenase domain-containing protein  39.45 
 
 
398 aa  273  5.000000000000001e-72  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1147  acyl-CoA dehydrogenase  39.45 
 
 
398 aa  273  5.000000000000001e-72  Burkholderia mallei SAVP1  Bacteria  normal  0.383138  n/a   
 
 
-
 
NC_009076  BURPS1106A_1316  acyl-CoA dehydrogenase  39.45 
 
 
398 aa  273  5.000000000000001e-72  Burkholderia pseudomallei 1106a  Bacteria  normal  0.23333  n/a   
 
 
-
 
NC_009080  BMA10247_0430  acyl-CoA dehydrogenase  39.45 
 
 
398 aa  273  5.000000000000001e-72  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_1045  acyl-CoA dehydrogenase domain-containing protein  38.6 
 
 
398 aa  273  6e-72  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0868009  normal  0.228879 
 
 
-
 
NC_010622  Bphy_1992  acyl-CoA dehydrogenase domain-containing protein  38.4 
 
 
398 aa  270  2.9999999999999997e-71  Burkholderia phymatum STM815  Bacteria  normal  0.11361  normal  0.377898 
 
 
-
 
NC_007958  RPD_3550  acyl-CoA dehydrogenase-like  38.89 
 
 
396 aa  266  4e-70  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1749  Acyl-CoA dehydrogenase-like  38.89 
 
 
396 aa  266  5.999999999999999e-70  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0172136 
 
 
-
 
NC_009719  Plav_1807  acyl-CoA dehydrogenase domain-containing protein  38.56 
 
 
399 aa  265  7e-70  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.167167  normal 
 
 
-
 
NC_011004  Rpal_4235  pimeloyl-CoA dehydrogenase, large subunit  38.64 
 
 
396 aa  266  7e-70  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_7071  putative pimeloyl-CoA dehydrogenase pimC (large subunit)  39.7 
 
 
396 aa  265  2e-69  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0496  acyl-CoA dehydrogenase domain-containing protein  38.25 
 
 
400 aa  263  4.999999999999999e-69  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.954912  normal 
 
 
-
 
NC_007925  RPC_2229  acyl-CoA dehydrogenase-like  37.72 
 
 
396 aa  262  6.999999999999999e-69  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.033637  normal  0.0664218 
 
 
-
 
NC_009485  BBta_5149  putative acyl-CoA dehydrogenase  38.29 
 
 
393 aa  262  8e-69  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.195919  normal  0.0612186 
 
 
-
 
NC_010512  Bcenmc03_6851  acyl-CoA dehydrogenase domain-containing protein  37.94 
 
 
399 aa  261  2e-68  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007950  Bpro_5277  acyl-CoA dehydrogenase-like  39.75 
 
 
389 aa  261  2e-68  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_5530  acyl-CoA dehydrogenase  38.5 
 
 
386 aa  261  2e-68  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B3603  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  36.67 
 
 
411 aa  258  2e-67  Ralstonia eutropha JMP134  Bacteria  normal  0.0376418  n/a   
 
 
-
 
NC_009719  Plav_1060  acyl-CoA dehydrogenase domain-containing protein  35.68 
 
 
397 aa  256  4e-67  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.596056  normal 
 
 
-
 
NC_008048  Sala_1104  acyl-CoA dehydrogenase-like protein  37.37 
 
 
397 aa  255  1.0000000000000001e-66  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.289526  normal 
 
 
-
 
NC_008463  PA14_51100  acyl-CoA dehydrogenase  37.5 
 
 
381 aa  252  7e-66  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.28895  decreased coverage  0.000000076859 
 
 
-
 
NC_007348  Reut_B4559  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  37.47 
 
 
382 aa  252  8.000000000000001e-66  Ralstonia eutropha JMP134  Bacteria  normal  0.308203  n/a   
 
 
-
 
NC_009338  Mflv_2287  acyl-CoA dehydrogenase domain-containing protein  38.73 
 
 
385 aa  252  8.000000000000001e-66  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_4379  acyl-CoA dehydrogenase domain-containing protein  39.74 
 
 
385 aa  252  9.000000000000001e-66  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.627573  normal 
 
 
-
 
NC_008347  Mmar10_2529  acyl-CoA dehydrogenase domain-containing protein  37.53 
 
 
393 aa  252  9.000000000000001e-66  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5374  acyl-CoA dehydrogenase domain-containing protein  36.14 
 
 
393 aa  252  1e-65  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.988839 
 
 
-
 
NC_008752  Aave_3439  acyl-CoA dehydrogenase domain-containing protein  36.54 
 
 
401 aa  250  3e-65  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.154359 
 
 
-
 
NC_007908  Rfer_1646  acyl-CoA dehydrogenase-like  36.09 
 
 
393 aa  250  4e-65  Rhodoferax ferrireducens T118  Bacteria  normal  0.765479  n/a   
 
 
-
 
NC_009719  Plav_2018  acyl-CoA dehydrogenase domain-containing protein  37.14 
 
 
411 aa  249  4e-65  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.642987 
 
 
-
 
NC_010338  Caul_2048  acyl-CoA dehydrogenase domain-containing protein  36.72 
 
 
404 aa  250  4e-65  Caulobacter sp. K31  Bacteria  normal  0.200153  normal 
 
 
-
 
NC_012791  Vapar_0842  acyl-CoA dehydrogenase domain protein  36.72 
 
 
402 aa  249  5e-65  Variovorax paradoxus S110  Bacteria  normal  0.0566206  n/a   
 
 
-
 
NC_008752  Aave_4313  acyl-CoA dehydrogenase domain-containing protein  36.97 
 
 
402 aa  249  5e-65  Acidovorax citrulli AAC00-1  Bacteria  normal  0.168466  normal  0.322728 
 
 
-
 
NC_012791  Vapar_1274  acyl-CoA dehydrogenase domain protein  36.43 
 
 
393 aa  249  5e-65  Variovorax paradoxus S110  Bacteria  normal  0.409233  n/a   
 
 
-
 
NC_007348  Reut_B4790  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  35.84 
 
 
395 aa  248  2e-64  Ralstonia eutropha JMP134  Bacteria  normal  0.103572  n/a   
 
 
-
 
NC_011992  Dtpsy_2731  acyl-CoA dehydrogenase domain protein  36.27 
 
 
393 aa  247  2e-64  Acidovorax ebreus TPSY  Bacteria  normal  0.572284  n/a   
 
 
-
 
NC_013757  Gobs_2179  acyl-CoA dehydrogenase domain protein  39 
 
 
391 aa  247  2e-64  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1314  acyl-CoA dehydrogenase domain protein  38.14 
 
 
775 aa  246  4e-64  Variovorax paradoxus S110  Bacteria  normal  0.788879  n/a   
 
 
-
 
NC_010338  Caul_3392  acyl-CoA dehydrogenase domain-containing protein  34.5 
 
 
403 aa  246  4.9999999999999997e-64  Caulobacter sp. K31  Bacteria  normal  normal  0.160573 
 
 
-
 
NC_009656  PSPA7_4361  acyl-CoA dehydrogenase  36.91 
 
 
381 aa  246  6e-64  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B3535  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  37.94 
 
 
397 aa  245  8e-64  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_5118  acyl-CoA dehydrogenase-like protein  38.29 
 
 
399 aa  246  8e-64  Mycobacterium sp. MCS  Bacteria  normal  0.840312  n/a   
 
 
-
 
NC_009077  Mjls_5498  acyl-CoA dehydrogenase domain-containing protein  38.29 
 
 
399 aa  246  8e-64  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_5207  acyl-CoA dehydrogenase domain-containing protein  38.29 
 
 
399 aa  246  8e-64  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_3393  acyl-CoA dehydrogenase domain-containing protein  36.27 
 
 
393 aa  245  9e-64  Acidovorax sp. JS42  Bacteria  normal  normal  0.389251 
 
 
-
 
NC_010338  Caul_1361  acyl-CoA dehydrogenase domain-containing protein  36.5 
 
 
400 aa  245  9.999999999999999e-64  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_010512  Bcenmc03_6856  acyl-CoA dehydrogenase domain-containing protein  37.44 
 
 
402 aa  244  9.999999999999999e-64  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_0105  acyl-CoA dehydrogenase-like  34.89 
 
 
396 aa  245  9.999999999999999e-64  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_1060  acyl-CoA dehydrogenase domain-containing protein  37.03 
 
 
398 aa  244  1.9999999999999999e-63  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_1395  acyl-CoA dehydrogenase domain-containing protein  35.01 
 
 
398 aa  244  1.9999999999999999e-63  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0499  acyl-CoA dehydrogenase domain-containing protein  37.29 
 
 
452 aa  243  3e-63  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.504662  normal 
 
 
-
 
NC_008786  Veis_2104  acyl-CoA dehydrogenase domain-containing protein  36.02 
 
 
393 aa  243  3.9999999999999997e-63  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_3224  acyl-CoA dehydrogenase domain-containing protein  35.52 
 
 
393 aa  243  3.9999999999999997e-63  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_3845  acyl-CoA dehydrogenase-like  35.01 
 
 
393 aa  243  5e-63  Polaromonas sp. JS666  Bacteria  normal  0.634206  normal 
 
 
-
 
NC_008786  Veis_4958  acyl-CoA dehydrogenase domain-containing protein  35.43 
 
 
397 aa  243  6e-63  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_4007  acyl-CoA dehydrogenase-like  37 
 
 
398 aa  243  6e-63  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0845  acyl-CoA dehydrogenase-like protein  36.79 
 
 
398 aa  242  7e-63  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.444844 
 
 
-
 
NC_007778  RPB_1238  Acyl-CoA dehydrogenase-like  36.09 
 
 
398 aa  241  1e-62  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1429  acyl-CoA dehydrogenase domain protein  36.09 
 
 
398 aa  242  1e-62  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_2737  acyl-CoA dehydrogenase domain protein  34.93 
 
 
402 aa  241  1e-62  Burkholderia phytofirmans PsJN  Bacteria  normal  0.944571  normal 
 
 
-
 
NC_011992  Dtpsy_3018  acyl-CoA dehydrogenase domain protein  34.83 
 
 
403 aa  241  1e-62  Acidovorax ebreus TPSY  Bacteria  normal  0.162676  n/a   
 
 
-
 
NC_008782  Ajs_3737  acyl-CoA dehydrogenase domain-containing protein  34.83 
 
 
403 aa  241  2e-62  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_3803  putative acyl-CoA dehydrogenase-like protein  38.25 
 
 
397 aa  241  2e-62  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_2933  acyl-CoA dehydrogenase domain-containing protein  35.09 
 
 
398 aa  241  2e-62  Burkholderia ambifaria AMMD  Bacteria  normal  0.26502  n/a   
 
 
-
 
NC_007509  Bcep18194_C7146  Acyl-CoA dehydrogenase-like  37.12 
 
 
398 aa  240  4e-62  Burkholderia sp. 383  Bacteria  normal  0.333486  normal 
 
 
-
 
NC_007974  Rmet_5141  acyl-CoA dehydrogenase  36.74 
 
 
412 aa  240  4e-62  Cupriavidus metallidurans CH34  Bacteria  normal  0.337451  normal  0.365814 
 
 
-
 
NC_013440  Hoch_2702  acyl-CoA dehydrogenase domain protein  34.74 
 
 
402 aa  239  5e-62  Haliangium ochraceum DSM 14365  Bacteria  normal  0.428781  normal  0.37064 
 
 
-
 
NC_008786  Veis_2008  acyl-CoA dehydrogenase domain-containing protein  38.52 
 
 
833 aa  239  5.999999999999999e-62  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.773218 
 
 
-
 
NC_010551  BamMC406_2795  acyl-CoA dehydrogenase domain-containing protein  34.75 
 
 
398 aa  238  1e-61  Burkholderia ambifaria MC40-6  Bacteria  normal  0.174567  normal 
 
 
-
 
NC_007951  Bxe_A1390  putative acyl-CoA dehydrogenase  35.17 
 
 
416 aa  238  1e-61  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.342556 
 
 
-
 
NC_009511  Swit_0317  acyl-CoA dehydrogenase domain-containing protein  38.11 
 
 
386 aa  238  1e-61  Sphingomonas wittichii RW1  Bacteria  normal  0.410084  normal 
 
 
-
 
NC_009484  Acry_0253  acyl-CoA dehydrogenase domain-containing protein  36.97 
 
 
403 aa  238  2e-61  Acidiphilium cryptum JF-5  Bacteria  normal  0.0424769  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>