| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3393 |
|---|
| Symbol | |
|---|
| ID | 4674124 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 3580409 |
|---|
| End bp | 3581590 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639840431 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_987589 |
|---|
| Protein GI | 121595693 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.389251 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCTTG CATTCACCCC CGAAGAGCAG GCATTCCGCG AGGAAATTCG CGCCTGGGTG
CGCACCCACC TGCCCCAGGA CATCGCACAC AAGGTGCACA ACGCCCTGCG CCTGACCAAG
GACGACATGC AGCGCTGGGC CAAGATCCTC GGCGCCAAGG GCTGGCTGGG CTACGGCTGG
CCCCGGGAGT TCGGCGGACC CGGCTGGAAC GCCGTGCAAA AGCACTTGTT CGAAGAGGAA
TGCGCCCTCG CCGGCGCGCC GCGCATCGTG CCCTTCGGGC CGGTGATGGT GGCGCCCGTG
ATCATGGCCT TTGGCAGCAA GGAGCAGCAG CAGCGCTTCC TGCCCGGCAT CGCCAGCGGC
GAGGTGTGGT GGAGCCAGGG CTACAGCGAG CCGGGCTCGG GCTCGGACCT GGCCAGCCTC
AAGACCCGCG CCGAGCGCGT GGGCGACAAG TACATCGTCA ACGGCCAGAA GACATGGACC
ACGCTCGGCC AGTACGGCGA CTGGATGTTC AACCTGGTGC GCACCAGCAC GGAGGGCAAG
CCGCAGACGG GCATCAGCTT CCTGCTGCTG GACATGAAGT CGCCCGGCGT CACCGTGCGG
CCCATCAAGC TGCTGGATGG CGAGTGCGAG GTCAACGAGG TGTTCTTCGA CAACGTCGAG
GTGCCTGCCG ACCAGCTCAT CGGCGAGGAG AACAAGGGTT GGACCTACGC CAAGCACCTG
CTCAGCCATG AGCGCACCAA CATCGCCGAC GTGAACCGCG CCAAGCGCGA GCTGGAGCGT
TTGAAGCGCA TCGCCAAGGC CGAGGGCGTG TGGGACGACA TGCGCTTTCG CGACCAGATC
GCGCTGCTGG AGGTGGACAT CGTCGCGCTG GAGATGCTGG TGCTGCGCGT GCTGTCGATG
GAAAAGAGCG GCAAGAACCC GCTGGACATC GCCGGCCTGC CGAAGATCCG CGGCAGCGAG
ATCCAGCAGC GCTATGCAGA GCTGATGATG CTGGCCGCCG GCCCCTTTGC CCTGCCCTTC
ATCGAGGAAG CCATGGAAGC CGGCTGGCAG GGCGACTTCC CTGGCGGCGT GGCCGCCAAC
GCCCCCCTCG CCTCCACCTA CTTCAACCTG CGCAAGACCA CCATCTACGG CGGCAGCAAT
GAAGTGCAAC GCAATATCGT CGCTCAGACC GTGCTGGGTT AA
|
|---|
| Protein sequence | MDLAFTPEEQ AFREEIRAWV RTHLPQDIAH KVHNALRLTK DDMQRWAKIL GAKGWLGYGW
PREFGGPGWN AVQKHLFEEE CALAGAPRIV PFGPVMVAPV IMAFGSKEQQ QRFLPGIASG
EVWWSQGYSE PGSGSDLASL KTRAERVGDK YIVNGQKTWT TLGQYGDWMF NLVRTSTEGK
PQTGISFLLL DMKSPGVTVR PIKLLDGECE VNEVFFDNVE VPADQLIGEE NKGWTYAKHL
LSHERTNIAD VNRAKRELER LKRIAKAEGV WDDMRFRDQI ALLEVDIVAL EMLVLRVLSM
EKSGKNPLDI AGLPKIRGSE IQQRYAELMM LAAGPFALPF IEEAMEAGWQ GDFPGGVAAN
APLASTYFNL RKTTIYGGSN EVQRNIVAQT VLG
|
|---|
| |