| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4235 |
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| Symbol | |
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| ID | 6411919 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4546580 |
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| End bp | 4547770 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642714117 |
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| Product | pimeloyl-CoA dehydrogenase, large subunit |
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| Protein accession | YP_001993206 |
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| Protein GI | 192292601 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1960] Acyl-CoA dehydrogenases |
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| TIGRFAM ID | [TIGR03204] pimeloyl-CoA dehydrogenase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATCTGA ATTTCAGCAA GGAAGAGATC GCGTTCCGCG ACGAGGTGCG GCAGTTCTTC
AAGGACAATG TGCCGGCCAA GACGCGGCAG AAACTGATCG AAGGCCGCCA CAACACCAAG
GAAGAAATGG TCGAGTGGTA CCGCATCCTC AACAAGAAGG GCTGGGCGGT GACGCACTGG
CCGAAGGAAT ATGGCGGCAC CGGCTGGAGC TCGGTGCAGC ACTACATCTT CAATGAGGAG
CTGCAGGCCG CGCCTGCGCC GCAGCCGCTC GCCTTCGGCG TCTCGATGGT CGGCCCGGTG
ATCTACACTT TCGGCAGCGA GGAGCAGAAG AAGCGCTTCC TGCCGCGCAT CGCCAATGTC
GACGATTGGT GGTGCCAGGG CTTCTCCGAG CCGGGCTCGG GCTCCGACCT CGCTTCGCTC
AAGACCAAGG CGGAGAAGAA GGGCGACAAG TGGATCATCA ACGGCCAGAA GACCTGGACC
ACGCTGGCGC AGCACGCCGA CTGGATCTTC TGTCTGTGCC GCACCGATCC GGCCGCCAAG
AAGCAGGAAG GCATCTCCTT CATCCTGGTC GATATGAAGA CCAAGGGTAT CACCGTCCGT
CCGATCCAGA CCATCGACGG CGGGCACGAA GTCAACGAAG TGTTCTTCGA TGACGTCGAA
GTGCCGCTGG AGAACCTGGT CGGCCAGGAG AACAAGGGCT GGGACTACGC CAAGTTCCTG
CTCGGCAATG AGCGCACCGG CATCGCCCGG GTCGGCATGT CGAAGGAGCG CATCCGCCGC
ATCAAGCAGC TCGCCGCCCA GGTCGAGTCT GGCGGCAAGC CGGTGATCGA GGATCCCAAG
TTCCGCGACA AGCTGGCGGC GGTCGAGATC GAACTGAAGG CGCTCGAGCT CACCCAGCTC
CGCGTCGTCG CCGATGAAGG CAAGCACGGC AAGGGCAAGC CGAACCCGGC GTCTTCGGTG
CTGAAGATCA AGGGCTCCGA GATCCAGCAG GCGACCACCG AGCTTCTGAT GGAAGTGATC
GGCCCGTTCG CCGCGCCGTA CGACGTCCAT GGCGACGACG ATTCGAACGA GACGATGGAT
TGGACCGCCC AGATCGCCCC CGGTTACTTC AACAATCGCA AGGTCTCGAT CTACGGCGGC
TCCAACGAGA TCCAGCGCAA CATCATCTGC AAGGCGGTGC TCGGGCTGTA A
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| Protein sequence | MDLNFSKEEI AFRDEVRQFF KDNVPAKTRQ KLIEGRHNTK EEMVEWYRIL NKKGWAVTHW
PKEYGGTGWS SVQHYIFNEE LQAAPAPQPL AFGVSMVGPV IYTFGSEEQK KRFLPRIANV
DDWWCQGFSE PGSGSDLASL KTKAEKKGDK WIINGQKTWT TLAQHADWIF CLCRTDPAAK
KQEGISFILV DMKTKGITVR PIQTIDGGHE VNEVFFDDVE VPLENLVGQE NKGWDYAKFL
LGNERTGIAR VGMSKERIRR IKQLAAQVES GGKPVIEDPK FRDKLAAVEI ELKALELTQL
RVVADEGKHG KGKPNPASSV LKIKGSEIQQ ATTELLMEVI GPFAAPYDVH GDDDSNETMD
WTAQIAPGYF NNRKVSIYGG SNEIQRNIIC KAVLGL
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