More than 300 homologs were found in PanDaTox collection
for query gene Hlac_2572 on replicon NC_012029
Organism: Halorubrum lacusprofundi ATCC 49239



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012029  Hlac_2572  histone family protein DNA-binding protein  100 
 
 
206 aa  412  1e-114  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  normal 
 
 
-
 
NC_014230  CA2559_09623  probable DNA-binding protein HU  62.2 
 
 
90 aa  95.5  5e-19  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.355669  n/a   
 
 
-
 
NC_008255  CHU_2750  DNA-binding protein HU-beta  63.08 
 
 
90 aa  88.6  6e-17  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_0139  histone family protein DNA-binding protein  58.54 
 
 
90 aa  88.6  7e-17  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0648  histone family protein DNA-binding protein  51.28 
 
 
91 aa  83.6  0.000000000000002  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.0000000000417185  n/a   
 
 
-
 
NC_010831  Cphamn1_0324  histone family protein DNA-binding protein  54.32 
 
 
90 aa  83.2  0.000000000000003  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.064189  normal  0.0110025 
 
 
-
 
NC_006368  lpp1826  hypothetical protein  52.33 
 
 
92 aa  82.8  0.000000000000003  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1822  hypothetical protein  52.33 
 
 
92 aa  82.8  0.000000000000003  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_013162  Coch_1967  histone family protein DNA-binding protein  52.44 
 
 
92 aa  82.8  0.000000000000003  Capnocytophaga ochracea DSM 7271  Bacteria  hitchhiker  0.00606172  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1641  DNA-binding protein HU  58.46 
 
 
94 aa  82.4  0.000000000000004  Coxiella burnetii RSA 331  Bacteria  unclonable  7.02248e-19  n/a   
 
 
-
 
NC_009727  CBUD_0508  DNA-binding protein HU  58.46 
 
 
94 aa  82.4  0.000000000000004  Coxiella burnetii Dugway 5J108-111  Bacteria  hitchhiker  0.000000377509  n/a   
 
 
-
 
NC_002977  MCA0532  DNA-binding protein HU-beta  58.46 
 
 
90 aa  81.6  0.000000000000007  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.00043104  n/a   
 
 
-
 
NC_007947  Mfla_0016  nucleoid protein HU beta subunit  55.38 
 
 
90 aa  81.6  0.000000000000007  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1926  histone family protein DNA-binding protein  54.88 
 
 
92 aa  81.3  0.00000000000001  Geobacter lovleyi SZ  Bacteria  unclonable  0.0000000201993  n/a   
 
 
-
 
NC_009674  Bcer98_1763  histone family protein DNA-binding protein  51.22 
 
 
90 aa  80.9  0.00000000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.203917  n/a   
 
 
-
 
NC_007948  Bpro_1551  histone-like DNA-binding protein  50.59 
 
 
103 aa  80.9  0.00000000000001  Polaromonas sp. JS666  Bacteria  hitchhiker  0.00525571  normal  0.659297 
 
 
-
 
NC_008009  Acid345_4704  histone-like DNA-binding protein  50 
 
 
93 aa  81.3  0.00000000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.833222 
 
 
-
 
NC_013132  Cpin_0888  histone family protein DNA-binding protein  55.38 
 
 
89 aa  80.1  0.00000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_1181  histone family protein DNA-binding protein  53.66 
 
 
92 aa  80.5  0.00000000000002  Pelobacter propionicus DSM 2379  Bacteria  normal  0.42545  n/a   
 
 
-
 
NC_003909  BCE_2407  DNA-binding protein HU  51.22 
 
 
90 aa  79.7  0.00000000000003  Bacillus cereus ATCC 10987  Bacteria  normal  0.020348  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2184  histone family protein DNA-binding protein  51.22 
 
 
90 aa  79.7  0.00000000000003  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.170143  n/a   
 
 
-
 
NC_005945  BAS2213  DNA-binding protein HU  51.22 
 
 
90 aa  79.7  0.00000000000003  Bacillus anthracis str. Sterne  Bacteria  normal  0.519209  n/a   
 
 
-
 
NC_005957  BT9727_2152  DNA-binding protein HU  51.22 
 
 
90 aa  79.7  0.00000000000003  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0274093  n/a   
 
 
-
 
NC_011725  BCB4264_A2342  DNA-binding protein HU  51.22 
 
 
90 aa  79.7  0.00000000000003  Bacillus cereus B4264  Bacteria  normal  0.868034  n/a   
 
 
-
 
NC_006274  BCZK2136  DNA-binding protein HU  51.22 
 
 
90 aa  79.7  0.00000000000003  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_2395  DNA-binding protein HU  51.22 
 
 
90 aa  79.7  0.00000000000003  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011658  BCAH187_A2477  DNA-binding protein HU  51.22 
 
 
90 aa  79.7  0.00000000000003  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_1180  histone-like DNA-binding protein  52.44 
 
 
90 aa  79.3  0.00000000000003  Thiomicrospira crunogena XCL-2  Bacteria  unclonable  2.95654e-16  n/a   
 
 
-
 
NC_007530  GBAA_2377  DNA-binding protein HU  51.22 
 
 
90 aa  79.7  0.00000000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B2983  DNA-binding protein HU  51.22 
 
 
90 aa  79.7  0.00000000000003  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1544  histone family protein DNA-binding protein  53.09 
 
 
90 aa  79.7  0.00000000000003  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.000000007734  hitchhiker  0.000745392 
 
 
-
 
NC_009901  Spea_2678  histone family protein DNA-binding protein  51.85 
 
 
90 aa  79.3  0.00000000000004  Shewanella pealeana ATCC 700345  Bacteria  unclonable  0.0000000000589622  n/a   
 
 
-
 
NC_007404  Tbd_0007  histone-like DNA-binding protein  59.7 
 
 
98 aa  79  0.00000000000004  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_2492  histone-like DNA-binding protein  53.09 
 
 
90 aa  79.3  0.00000000000004  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00401844  n/a   
 
 
-
 
NC_007963  Csal_2043  histone-like DNA-binding protein  55.38 
 
 
90 aa  79.3  0.00000000000004  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2505  histone family protein DNA-binding protein  53.09 
 
 
90 aa  79.3  0.00000000000004  Shewanella loihica PV-4  Bacteria  hitchhiker  0.0000000791734  normal  0.581146 
 
 
-
 
NC_008345  Sfri_2593  histone family protein DNA-binding protein  53.09 
 
 
91 aa  79  0.00000000000004  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.0000000173721  n/a   
 
 
-
 
NC_012880  Dd703_3710  transcriptional regulator HU subunit alpha  54.88 
 
 
90 aa  79  0.00000000000005  Dickeya dadantii Ech703  Bacteria  normal  0.273113  n/a   
 
 
-
 
NC_008345  Sfri_3532  histone family protein DNA-binding protein  51.85 
 
 
90 aa  78.6  0.00000000000006  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011775  BCG9842_0074  DNA-binding protein HU  48.24 
 
 
90 aa  78.2  0.00000000000007  Bacillus cereus G9842  Bacteria  unclonable  0.00000000000481156  n/a   
 
 
-
 
NC_013422  Hneap_0390  histone family protein DNA-binding protein  55.38 
 
 
90 aa  78.6  0.00000000000007  Halothiobacillus neapolitanus c2  Bacteria  decreased coverage  0.0000165854  n/a   
 
 
-
 
NC_010180  BcerKBAB4_5693  histone family protein DNA-binding protein  50 
 
 
90 aa  78.2  0.00000000000007  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0471576  normal  0.0346696 
 
 
-
 
NC_008740  Maqu_1837  histone family protein DNA-binding protein  53.85 
 
 
90 aa  78.2  0.00000000000008  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00431989  n/a   
 
 
-
 
NC_009012  Cthe_2657  nucleoid protein Hbs  48.72 
 
 
91 aa  78.2  0.00000000000008  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.000194133  n/a   
 
 
-
 
NC_007954  Sden_0658  histone-like DNA-binding protein  51.85 
 
 
90 aa  78.2  0.00000000000009  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_4353  histone family protein DNA-binding protein  50 
 
 
90 aa  78.2  0.00000000000009  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_0201  histone family protein DNA-binding protein  50.59 
 
 
91 aa  77.4  0.0000000000001  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.000000429798  n/a   
 
 
-
 
NC_012912  Dd1591_3864  transcriptional regulator HU subunit alpha  53.66 
 
 
90 aa  77.8  0.0000000000001  Dickeya zeae Ech1591  Bacteria  normal  0.78216  n/a   
 
 
-
 
NC_011060  Ppha_2673  histone family protein DNA-binding protein  50.62 
 
 
91 aa  77.8  0.0000000000001  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.156087  n/a   
 
 
-
 
NC_013456  VEA_002182  DNA-binding protein HU-alpha  53.09 
 
 
90 aa  77.4  0.0000000000001  Vibrio sp. Ex25  Bacteria  normal  0.131368  n/a   
 
 
-
 
CP001509  ECD_03877  HU, DNA-binding transcriptional regulator, alpha subunit  52.44 
 
 
90 aa  76.6  0.0000000000002  Escherichia coli BL21(DE3)  Bacteria  normal  0.380115  n/a   
 
 
-
 
CP001637  EcDH1_3994  histone family protein DNA-binding protein  52.44 
 
 
90 aa  76.6  0.0000000000002  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A4503  transcriptional regulator HU subunit alpha  52.44 
 
 
90 aa  76.6  0.0000000000002  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.0164141 
 
 
-
 
NC_010001  Cphy_0133  histone family protein DNA-binding protein  50.75 
 
 
91 aa  76.6  0.0000000000002  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0000000116647  n/a   
 
 
-
 
NC_011353  ECH74115_5469  transcriptional regulator HU subunit alpha  52.44 
 
 
90 aa  76.6  0.0000000000002  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.129609  normal 
 
 
-
 
NC_009832  Spro_0290  transcriptional regulator HU subunit alpha  52.44 
 
 
90 aa  76.6  0.0000000000002  Serratia proteamaculans 568  Bacteria  hitchhiker  0.0031706  hitchhiker  0.00995537 
 
 
-
 
NC_009783  VIBHAR_01420  nucleoid DNA-binding protein  52.31 
 
 
90 aa  77  0.0000000000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011094  SeSA_A4381  transcriptional regulator HU subunit alpha  52.44 
 
 
90 aa  76.6  0.0000000000002  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.842423 
 
 
-
 
NC_009801  EcE24377A_4543  transcriptional regulator HU subunit alpha  52.44 
 
 
90 aa  76.6  0.0000000000002  Escherichia coli E24377A  Bacteria  normal  0.440082  n/a   
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  53.85 
 
 
90 aa  77  0.0000000000002  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_012892  B21_03830  hypothetical protein  52.44 
 
 
90 aa  76.6  0.0000000000002  Escherichia coli BL21  Bacteria  normal  0.485291  n/a   
 
 
-
 
NC_009483  Gura_4407  histone family protein DNA-binding protein  51.85 
 
 
94 aa  77  0.0000000000002  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000192025  n/a   
 
 
-
 
NC_010658  SbBS512_E4491  transcriptional regulator HU subunit alpha  52.44 
 
 
90 aa  76.6  0.0000000000002  Shigella boydii CDC 3083-94  Bacteria  normal  0.0852675  n/a   
 
 
-
 
NC_011149  SeAg_B4414  transcriptional regulator HU subunit alpha  52.44 
 
 
90 aa  76.6  0.0000000000002  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.18011  n/a   
 
 
-
 
NC_007984  BCI_0040  DNA-binding protein HU-alpha  53.66 
 
 
94 aa  76.6  0.0000000000002  Baumannia cicadellinicola str. Hc (Homalodisca coagulata)  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C4501  transcriptional regulator HU subunit alpha  52.44 
 
 
90 aa  76.6  0.0000000000002  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.358882  normal  0.0495174 
 
 
-
 
NC_008228  Patl_3133  histone-like DNA-binding protein  52.31 
 
 
90 aa  77  0.0000000000002  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.0000000045924  n/a   
 
 
-
 
NC_010468  EcolC_4025  transcriptional regulator HU subunit alpha  52.44 
 
 
90 aa  76.6  0.0000000000002  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.0158227 
 
 
-
 
NC_009800  EcHS_A4234  transcriptional regulator HU subunit alpha  52.44 
 
 
90 aa  76.6  0.0000000000002  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A4577  transcriptional regulator HU subunit alpha  52.44 
 
 
90 aa  76.6  0.0000000000002  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.511964 
 
 
-
 
NC_010498  EcSMS35_4448  transcriptional regulator HU subunit alpha  52.44 
 
 
90 aa  76.6  0.0000000000002  Escherichia coli SMS-3-5  Bacteria  normal  0.302586  hitchhiker  0.00101008 
 
 
-
 
NC_010506  Swoo_3110  histone family protein DNA-binding protein  51.85 
 
 
90 aa  76.6  0.0000000000002  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000105676  hitchhiker  0.00000299463 
 
 
-
 
NC_009783  VIBHAR_00213  DNA-binding protein  53.09 
 
 
101 aa  77  0.0000000000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012560  Avin_23600  histone-like DNA-binding protein  52.31 
 
 
90 aa  76.3  0.0000000000003  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_0465  histone family protein DNA-binding protein  53.85 
 
 
90 aa  76.3  0.0000000000003  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009439  Pmen_2053  nucleoid protein HU beta subunit  52.31 
 
 
90 aa  76.3  0.0000000000003  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.000457213  normal  0.0670315 
 
 
-
 
NC_013093  Amir_0860  histone family protein DNA-binding protein  53.85 
 
 
90 aa  76.3  0.0000000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0124999  n/a   
 
 
-
 
NC_007947  Mfla_1412  histone-like DNA-binding protein  56.25 
 
 
91 aa  76.3  0.0000000000003  Methylobacillus flagellatus KT  Bacteria  unclonable  0.0000000000277772  normal 
 
 
-
 
NC_009656  PSPA7_3493  DNA-binding protein HU  52.31 
 
 
90 aa  76.3  0.0000000000003  Pseudomonas aeruginosa PA7  Bacteria  normal  0.175993  n/a   
 
 
-
 
NC_008463  PA14_41210  DNA-binding protein HU  52.31 
 
 
90 aa  76.3  0.0000000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0758892  normal  0.416187 
 
 
-
 
NC_011059  Paes_0293  histone family protein DNA-binding protein  49.23 
 
 
94 aa  76.3  0.0000000000003  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.416752  normal  0.0238993 
 
 
-
 
NC_010465  YPK_0354  transcriptional regulator HU subunit alpha  52.44 
 
 
91 aa  75.9  0.0000000000004  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.224811  n/a   
 
 
-
 
NC_010159  YpAngola_A0462  transcriptional regulator HU subunit alpha  52.44 
 
 
91 aa  75.9  0.0000000000004  Yersinia pestis Angola  Bacteria  normal  0.082883  hitchhiker  0.00197429 
 
 
-
 
NC_012917  PC1_0222  transcriptional regulator HU subunit alpha  52.44 
 
 
90 aa  75.9  0.0000000000004  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.390191  n/a   
 
 
-
 
NC_013421  Pecwa_0226  transcriptional regulator HU subunit alpha  52.44 
 
 
90 aa  75.9  0.0000000000004  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0975648  n/a   
 
 
-
 
NC_009708  YpsIP31758_3846  transcriptional regulator HU subunit alpha  52.44 
 
 
91 aa  75.9  0.0000000000004  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.219693  n/a   
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  52.38 
 
 
90 aa  75.9  0.0000000000004  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
NC_009457  VC0395_A1509  DNA-binding protein HU-beta  50.77 
 
 
90 aa  75.9  0.0000000000004  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000000490467  n/a   
 
 
-
 
NC_009436  Ent638_0213  transcriptional regulator HU subunit alpha  52.44 
 
 
90 aa  75.9  0.0000000000004  Enterobacter sp. 638  Bacteria  hitchhiker  0.00855152  normal  0.0112419 
 
 
-
 
NC_009831  Ssed_0600  histone family protein DNA-binding protein  50.62 
 
 
90 aa  75.9  0.0000000000004  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_1468  DNA-binding protein HU beta subunit  50 
 
 
91 aa  75.5  0.0000000000005  Psychromonas ingrahamii 37  Bacteria  normal  0.961834  normal  0.643607 
 
 
-
 
NC_011662  Tmz1t_2014  histone family protein DNA-binding protein  52.31 
 
 
90 aa  75.5  0.0000000000005  Thauera sp. MZ1T  Bacteria  decreased coverage  0.000105311  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3494  histone family protein DNA-binding protein  46.34 
 
 
90 aa  75.5  0.0000000000005  Bacillus weihenstephanensis KBAB4  Bacteria  decreased coverage  0.00000668206  n/a   
 
 
-
 
NC_008577  Shewana3_2658  histone family protein DNA-binding protein  50.62 
 
 
90 aa  75.5  0.0000000000005  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000180426  normal  0.730265 
 
 
-
 
NC_009457  VC0395_A2650  DNA-binding protein HU  52.44 
 
 
90 aa  75.1  0.0000000000006  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  50.62 
 
 
90 aa  75.1  0.0000000000006  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011898  Ccel_3085  histone family protein DNA-binding protein  41.57 
 
 
91 aa  75.1  0.0000000000006  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.000115471  n/a   
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  50.62 
 
 
90 aa  75.1  0.0000000000006  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_009997  Sbal195_1630  histone family protein DNA-binding protein  50.62 
 
 
90 aa  75.1  0.0000000000006  Shewanella baltica OS195  Bacteria  unclonable  0.0000000159632  normal 
 
 
-
 
NC_008321  Shewmr4_2492  histone family protein DNA-binding protein  50.62 
 
 
90 aa  75.1  0.0000000000006  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000348442  normal  0.0842071 
 
 
-
 
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