| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4448 |
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| Symbol | hupA |
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| ID | 6144200 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 4544812 |
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| End bp | 4545084 |
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| Gene Length | 273 bp |
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| Protein Length | 90 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641619268 |
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| Product | transcriptional regulator HU subunit alpha |
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| Protein accession | YP_001746384 |
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| Protein GI | 170682013 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0776] Bacterial nucleoid DNA-binding protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.302586 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.00101008 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAACAAGA CTCAACTGAT TGATGTAATT GCAGAGAAAG CAGAACTGTC CAAAACCCAG
GCTAAAGCTG CTCTGGAGTC CACTCTGGCT GCAATTACTG AGTCTCTGAA AGAAGGCGAT
GCTGTACAAC TGGTTGGTTT CGGTACCTTC AAAGTGAACC ACCGCGCTGA GCGTACTGGC
CGCAACCCGC AGACCGGTAA AGAAATCAAA ATTGCCGCAG CTAACGTACC GGCATTTGTT
TCTGGCAAGG CACTGAAAGA CGCAGTTAAG TAA
|
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| Protein sequence | MNKTQLIDVI AEKAELSKTQ AKAALESTLA AITESLKEGD AVQLVGFGTF KVNHRAERTG
RNPQTGKEIK IAAANVPAFV SGKALKDAVK
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