144 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Gura_0015  CDS  NC_009483  22609  23628  +  1020  uroporphyrinogen decarboxylase  YP_001228806  decreased coverage  0.00367491  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0211  CDS  NC_009483  272329  274236  +  1908  molecular chaperone DnaK  YP_001229000  decreased coverage  0.00000228003  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0341  CDS  NC_009483  403051  403614  -  564  elongation factor P  YP_001229130  decreased coverage  0.000000484075  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0347  CDS  NC_009483  408587  409600  -  1014  delta-aminolevulinic acid dehydratase  YP_001229136  decreased coverage  0.000000508114  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0380  CDS  NC_009483  447525  448286  +  762  hypothetical protein  YP_001229169  decreased coverage  0.00000064309  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0430  CDS  NC_009483  502225  502710  +  486  rubrerythrin  YP_001229219  decreased coverage  0.00579708  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0431  CDS  NC_009483  502718  502921  +  204  putative PAS/PAC sensor protein  YP_001229220  decreased coverage  0.00281975  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0450  CDS  NC_009483  518519  519895  +  1377  rhodanese domain-containing protein  YP_001229239  decreased coverage  0.00000189467  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0541  CDS  NC_009483  633551  635314  +  1764  integral membrane sensor signal transduction histidine kinase  YP_001229328  decreased coverage  0.0000947824  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0605  CDS  NC_009483  727272  727514  +  243  hypothetical protein  YP_001229390  decreased coverage  0.0000000866139  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0686  CDS  NC_009483  817594  818427  +  834  hypothetical protein  YP_001229471  decreased coverage  0.00000000504074  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0739  CDS  NC_009483  870137  871747  +  1611  Cna B domain-containing protein  YP_001229522  decreased coverage  0.000604676  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0759  CDS  NC_009483  898593  899246  +  654  two component LuxR family transcriptional regulator  YP_001229541  decreased coverage  0.00000000356105  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0849  CDS  NC_009483  1007828  1008919  -  1092  putative transposase  YP_001229629  decreased coverage  0.000000021207  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0861  CDS  NC_009483  1021153  1022676  -  1524  hypothetical protein  YP_001229640  decreased coverage  0.0000162424  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0898  CDS  NC_009483  1063406  1063630  +  225  CopG/DNA-binding domain-containing protein  YP_001229677  decreased coverage  0.000000000639023  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0900  CDS  NC_009483  1064455  1064769  +  315  hypothetical protein  YP_001229679  decreased coverage  0.0000000010682  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0950  CDS  NC_009483  1123525  1124490  +  966  hypothetical protein  YP_001229729  decreased coverage  0.000000190963  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0966  CDS  NC_009483  1144550  1147480  -  2931  peptidase S9B dipeptidylpeptidase IV subunit  YP_001229745  decreased coverage  0.000198927  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1021  CDS  NC_009483  1216200  1218962  +  2763  RND efflux transporter  YP_001229800  decreased coverage  0.0000753999  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1048  CDS  NC_009483  1250158  1250892  +  735  tRNA pseudouridine synthase A  YP_001229827  decreased coverage  0.00000000774285  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1071  CDS  NC_009483  1275822  1276103  +  282  30S ribosomal protein S19  YP_001229850  decreased coverage  0.00000000120025  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1072  CDS  NC_009483  1276123  1276458  +  336  50S ribosomal protein L22  YP_001229851  decreased coverage  0.00000000186157  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1108  CDS  NC_009483  1302185  1302478  +  294  hypothetical protein  YP_001229887  decreased coverage  0.000000779781  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1146  CDS  NC_009483  1344534  1345100  -  567  response regulator receiver/ANTAR domain-containing protein  YP_001229923  decreased coverage  0.00000000356105  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1303  CDS  NC_009483  1537395  1537664  -  270  hypothetical protein  YP_001230077  decreased coverage  0.0000000161444  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1318  CDS  NC_009483  1555055  1555345  -  291  plasmid stabilization system protein  YP_001230092  decreased coverage  0.00000000683206  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1319  CDS  NC_009483  1555352  1555636  -  285  prevent-host-death family protein  YP_001230093  decreased coverage  0.00000000582533  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1388  CDS  NC_009483  1631264  1632949  -  1686  hypothetical protein  YP_001230162  decreased coverage  0.00000298772  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1433  CDS  NC_009483  1669492  1669812  -  321  hypothetical protein  YP_001230207  decreased coverage  0.000304955  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1434  CDS  NC_009483  1669898  1670569  -  672  hypothetical protein  YP_001230208  decreased coverage  0.000122167  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1466  CDS  NC_009483  1698125  1698973  +  849  hydroxymethylbutenyl pyrophosphate reductase  YP_001230238  decreased coverage  0.000045798  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1495  CDS  NC_009483  1741648  1742325  -  678  serine O-acetyltransferase  YP_001230267  decreased coverage  0.00000268046  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1571  CDS  NC_009483  1828496  1830274  -  1779  multi-sensor signal transduction histidine kinase  YP_001230340  decreased coverage  0.0000011549  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1606  CDS  NC_009483  1868795  1869622  +  828  protein of unknown function RIO1  YP_001230375  decreased coverage  0.00000000519001  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1614  CDS  NC_009483  1877288  1877662  +  375  hypothetical protein  YP_001230383  decreased coverage  0.00000000128573  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1628  CDS  NC_009483  1890058  1891368  -  1311  hypothetical protein  YP_001230396  decreased coverage  0.0000000975742  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1629  CDS  NC_009483  1891365  1892513  -  1149  hypothetical protein  YP_001230397  decreased coverage  0.0000000379081  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1630  CDS  NC_009483  1892562  1893194  -  633  hypothetical protein  YP_001230398  decreased coverage  0.00000000524239  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1631  CDS  NC_009483  1893563  1894030  +  468  bacterioferritin  YP_001230399  decreased coverage  0.00000000261591  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1638  CDS  NC_009483  1902494  1902883  +  390  hypothetical protein  YP_001230406  decreased coverage  0.000000000846806  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1639  CDS  NC_009483  1902990  1903715  -  726  hypothetical protein  YP_001230407  decreased coverage  0.00000000499155  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1641  CDS  NC_009483  1905442  1905828  +  387  response regulator receiver protein  YP_001230409  decreased coverage  0.00000000126042  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1642  CDS  NC_009483  1906005  1906160  +  156  hypothetical protein  YP_001230410  decreased coverage  0.000000000382297  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1713  CDS  NC_009483  1986798  1988876  -  2079  metal dependent phosphohydrolase  YP_001230481  decreased coverage  0.00000361253  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1739  CDS  NC_009483  2022155  2022745  -  591  isochorismatase hydrolase  YP_001230506  decreased coverage  0.00170664  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1741  CDS  NC_009483  2023099  2024274  -  1176  hypothetical protein  YP_001230507  decreased coverage  0.0012648  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1747  CDS  NC_009483  2031116  2031310  -  195  hypothetical protein  YP_001230513  decreased coverage  0.0000000292761  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1780  CDS  NC_009483  2058855  2060144  -  1290  phosphopyruvate hydratase  YP_001230543  decreased coverage  0.0000000860602  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1789  CDS  NC_009483  2069935  2071176  +  1242  hypothetical protein  YP_001230552  decreased coverage  0.000000891935  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1790  CDS  NC_009483  2071287  2071754  +  468  peptidylprolyl isomerase, FKBP-type  YP_001230553  decreased coverage  0.0000000166077  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1803  CDS  NC_009483  2089186  2089968  +  783  hypothetical protein  YP_001230566  decreased coverage  0.00000076837  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1865  CDS  NC_009483  2165916  2166392  +  477  transcription elongation factor GreA  YP_001230628  decreased coverage  0.00000000182493  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1871  CDS  NC_009483  2171718  2174726  +  3009  putative delta-1-pyrroline-5-carboxylate dehydrogenase  YP_001230634  decreased coverage  0.00392052  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1872  CDS  NC_009483  2174913  2175449  +  537  hypothetical protein  YP_001230635  decreased coverage  0.0000360622  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1891  CDS  NC_009483  2194799  2195482  -  684  hydrolase  YP_001230654  decreased coverage  0.00000000708914  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1892  CDS  NC_009483  2195535  2196917  -  1383  threonine synthase  YP_001230655  decreased coverage  0.000000135451  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1912  CDS  NC_009483  2215332  2216180  -  849  patatin  YP_001230675  decreased coverage  0.0000188558  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1917  CDS  NC_009483  2220209  2222635  +  2427  ATP-dependent protease La  YP_001230680  decreased coverage  0.0000156821  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1918  CDS  NC_009483  2222740  2223015  +  276  histone family protein DNA-binding protein  YP_001230681  decreased coverage  0.000000000897645  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1974  CDS  NC_009483  2284443  2285759  +  1317  DEAD/DEAH box helicase domain-containing protein  YP_001230737  decreased coverage  0.0000565888  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1985  CDS  NC_009483  2298117  2299790  +  1674  Sel1 domain-containing protein  YP_001230748  decreased coverage  0.00000285463  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1998  CDS  NC_009483  2316872  2317390  +  519  Sel1 domain-containing protein  YP_001230761  decreased coverage  0.00000000269346  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1999  CDS  NC_009483  2317422  2317748  +  327  hypothetical protein  YP_001230762  decreased coverage  0.00000000129843  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2089  CDS  NC_009483  2444604  2445776  +  1173  hypothetical protein  YP_001230852  decreased coverage  0.000268475  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2113  CDS  NC_009483  2467074  2469035  +  1962  hypothetical protein  YP_001230874  decreased coverage  0.00000221483  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2133  CDS  NC_009483  2490625  2491929  -  1305  phenylacetate--CoA ligase  YP_001230894  decreased coverage  0.00349267  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2135  CDS  NC_009483  2492571  2494322  -  1752  thiamine pyrophosphate binding domain-containing protein  YP_001230896  decreased coverage  0.00067173  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2140  CDS  NC_009483  2498208  2498636  -  429  hypothetical protein  YP_001230901  decreased coverage  0.000319999  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2154  CDS  NC_009483  2510133  2510753  +  621  phosphoribosylglycinamide formyltransferase  YP_001230915  decreased coverage  0.000000463189  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2155  CDS  NC_009483  2510783  2511226  -  444  TPR repeat-containing protein  YP_001230916  decreased coverage  0.000000155032  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2241  CDS  NC_009483  2600480  2601049  +  570  MucR family transcriptional regulator  YP_001230997  decreased coverage  0.00000000475717  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2251  CDS  NC_009483  2611457  2612137  -  681  peptidase M50  YP_001231007  decreased coverage  0.00000000694823  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2280  CDS  NC_009483  2639706  2640059  -  354  membrane protein of unknown function  YP_001231033  decreased coverage  0.00000000112149  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2281  CDS  NC_009483  2640403  2643078  +  2676  PAS/PAC sensor signal transduction histidine kinase  YP_001231034  decreased coverage  0.00177504  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2302  CDS  NC_009483  2664290  2665264  -  975  NAD-dependent epimerase/dehydratase  YP_001231054  decreased coverage  0.00284498  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2309  CDS  NC_009483  2671044  2671871  -  828  dimethyladenosine transferase  YP_001231061  decreased coverage  0.0000265248  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2331  CDS  NC_009483  2697624  2698574  +  951  hypothetical protein  YP_001231083  decreased coverage  0.0000000168007  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2332  CDS  NC_009483  2698634  2699458  +  825  hypothetical protein  YP_001231084  decreased coverage  0.0000000103614  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2409  CDS  NC_009483  2790789  2791616  -  828  molybdopterin binding domain-containing protein  YP_001231161  decreased coverage  0.00000000922318  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2410  CDS  NC_009483  2791810  2792088  -  279  hypothetical protein  YP_001231162  decreased coverage  0.000000000775976  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2426  CDS  NC_009483  2810407  2812365  -  1959  TonB-dependent receptor, plug  YP_001231178  decreased coverage  0.0000164352  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2449  CDS  NC_009483  2833679  2833948  -  270  alkylhydroperoxidase  YP_001231201  decreased coverage  0.00215332  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2450  CDS  NC_009483  2834172  2835581  +  1410  GntR family transcriptional regulator  YP_001231202  decreased coverage  0.00121397  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2479  CDS  NC_009483  2865152  2865877  -  726  hypothetical protein  YP_001231230  decreased coverage  0.00000000681174  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2486  CDS  NC_009483  2875646  2876242  -  597  lytic transglycosylase, catalytic  YP_001231237  decreased coverage  0.00000427479  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2487  CDS  NC_009483  2876440  2878035  +  1596  L-aspartate oxidase  YP_001231238  decreased coverage  0.0000814089  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2506  CDS  NC_009483  2893730  2894686  -  957  acetyl-CoA carboxylase carboxyltransferase subunit alpha  YP_001231257  decreased coverage  0.0000000207961  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2556  CDS  NC_009483  2960683  2961360  +  678  two component transcriptional regulator  YP_001231307  decreased coverage  0.000000044969  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2564  CDS  NC_009483  2968498  2969001  +  504  putative phosphohistidine phosphatase, SixA  YP_001231315  decreased coverage  0.00000000228315  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2617  CDS  NC_009483  3042895  3043905  -  1011  RpoD family RNA polymerase sigma factor  YP_001231367  decreased coverage  0.0000623193  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2618  CDS  NC_009483  3043987  3044640  -  654  protein-L-isoaspartate O-methyltransferase  YP_001231368  decreased coverage  0.0000759722  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2628  CDS  NC_009483  3052467  3054404  -  1938  threonyl-tRNA synthetase  YP_001231378  decreased coverage  0.00000255721  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2687  CDS  NC_009483  3121607  3122443  -  837  Sec-independent protein translocase, TatC subunit  YP_001231434  decreased coverage  0.0000000498053  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2688  CDS  NC_009483  3122633  3123685  -  1053  response regulator receiver modulated CheB methylesterase  YP_001231435  decreased coverage  0.000000112566  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2744  CDS  NC_009483  3186995  3187423  +  429  response regulator receiver protein  YP_001231491  decreased coverage  0.0000000111314  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2799  CDS  NC_009483  3259992  3261050  -  1059  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase  YP_001231545  decreased coverage  0.000330305  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2846  CDS  NC_009483  3306942  3307544  +  603  flavin reductase domain-containing protein  YP_001231592  decreased coverage  0.0000500824  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2892  CDS  NC_009483  3355595  3356230  +  636  hypothetical protein  YP_001231637  decreased coverage  0.0000000701154  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2905  CDS  NC_009483  3368056  3370404  +  2349  putative GAF sensor protein  YP_001231650  decreased coverage  0.000121326  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
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