| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gura_2617 |
|---|
| Symbol | |
|---|
| ID | 5163904 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter uraniireducens Rf4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009483 |
|---|
| Strand | - |
|---|
| Start bp | 3042895 |
|---|
| End bp | 3043905 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640550113 |
|---|
| Product | RpoD family RNA polymerase sigma factor |
|---|
| Protein accession | YP_001231367 |
|---|
| Protein GI | 148264661 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000623193 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACAATG ATGATTTGAT AGAAGATTTT GCCGGAGACG AACAGCATAA AGATCTCGAT
ATCTTCATAG AGCCTGAACT TGAGCCTGAT GCAGTCGAGC TTGGGAGCGT AGAAGAGGTT
GAGGAGGCTG AGGAGGTTGA GGAAGAAGAG ATAAAGGTTG CTGTTGTCGA ACATTTCGAT
GACGCCATAA AGCTTTATCT GCGGGAGATC CAGAAAACAA AACTTCTTAC CGCCGATGAG
GAAAAAGAGC TGGCAGCGCG TATCGACAAG GGTGAGAAGG CTGCTCGCGA CAAGATGATC
GAATCCAACC TCCGGTTGGT GGTAAAGATT GCCAAGCGCT ACATAAACCG TGGCCTCCCC
TTTCTCGATC TGATCGAAGA GGGGAACATG GGGTTGATCA AGGCTGTGGA GCGCTTCAAA
CTCTCCAAGG AATGCCGTTT TTCCACCTAC GCAACATGGT GGATCAGGCA GTCCATAGAG
CGAGCGCTGG TTAATCAATC ACGGACCATC AGATTACCGG TACATGTTTC CGATGACATC
AACAAGATGC TCAGGATAAC CAGGGAACTG GTGCAAAAGG TGAACCGCGA GCCGTCGATC
AAAGAAGTGG CGACAGCAAT GGATGTTAAC TCCGCCTACA TACGGAGACT CATGGTCTTG
CTGAAAAAAA CCTACTCCAT TGAGCGGCCG ATGGGGGAAA ACAACGATTA CTTCCTGATT
GATACCATTG AGGATACATC CACCGTATCA CCTGCAGAGC TTCTGGAAGA CGTGAACAGA
TATGAGATGG TTTCAAAGTG GTTTGAAACG CTTTCGGATA GCGAAAAAAG AATTCTGACC
CTCCGTTTCG GCCTCGATGA CAAGGACCCC CAGACGCTGG ACACCATAGG CCGCAGCTTC
GGGGTTACCA GGGAGAGGAT TCGCCAGATC GAAGCAAAAT CCTTGGAAAA GCTCAGAAAA
ATACTTGAAG CTACGGAAGT GGCAGCGCGT AATAATTATC CCGGCAATTA A
|
|---|
| Protein sequence | MDNDDLIEDF AGDEQHKDLD IFIEPELEPD AVELGSVEEV EEAEEVEEEE IKVAVVEHFD
DAIKLYLREI QKTKLLTADE EKELAARIDK GEKAARDKMI ESNLRLVVKI AKRYINRGLP
FLDLIEEGNM GLIKAVERFK LSKECRFSTY ATWWIRQSIE RALVNQSRTI RLPVHVSDDI
NKMLRITREL VQKVNREPSI KEVATAMDVN SAYIRRLMVL LKKTYSIERP MGENNDYFLI
DTIEDTSTVS PAELLEDVNR YEMVSKWFET LSDSEKRILT LRFGLDDKDP QTLDTIGRSF
GVTRERIRQI EAKSLEKLRK ILEATEVAAR NNYPGN
|
|---|
| |