33 homologs were found in PanDaTox collection
for query gene Rmet_6072 on replicon NC_007971
Organism: Cupriavidus metallidurans CH34



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007971  Rmet_6072  putative transcriptional regulator Cro/CI family  100 
 
 		 233 aa  476  1e-133  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.406393 
 
 
-
 
NC_013203  Apar_0551  transcriptional regulator, XRE family  32.89 
 
 		 210 aa  53.5  0.000002  Atopobium parvulum DSM 20469  Bacteria  normal  0.401249  hitchhiker  0.0000933135 
 
 
-
 
NC_004116  SAG2015  Cro/CI family transcriptional regulator  42.31 
 
 		 99 aa  50.4  0.00002  Streptococcus agalactiae 2603V/R  Bacteria  hitchhiker  0.00850971  n/a   
 
 
-
 
NC_011830  Dhaf_0656  transcriptional regulator, XRE family  43.75 
 
 		 71 aa  48.1  0.0001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_013165  Shel_15940  predicted transcriptional regulator  36.07 
 
 		 119 aa  45.8  0.0006  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.0473945  hitchhiker  0.000000239728 
 
 
-
 
NC_009708  YpsIP31758_0337  DNA-binding protein  41.82 
 
 		 135 aa  45.4  0.0008  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  1  n/a   
 
 
-
 
NC_008530  LGAS_0638  XRE family transcriptional regulator  36.62 
 
 		 74 aa  45.1  0.0009  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  0.000000543981  normal  1 
 
 
-
 
NC_008530  LGAS_0576  XRE family transcriptional regulator  36.62 
 
 		 74 aa  45.1  0.0009  Lactobacillus gasseri ATCC 33323  Bacteria  decreased coverage  0.00000000000016932  normal  0.922143 
 
 
-
 
NC_008530  LGAS_0637  XRE family transcriptional regulator  34.29 
 
 		 115 aa  44.7  0.001  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  0.00000152617  normal  1 
 
 
-
 
NC_009997  Sbal195_2029  XRE family transcriptional regulator  37.5 
 
 		 71 aa  44.3  0.001  Shewanella baltica OS195  Bacteria  decreased coverage  0.0082126  normal  0.318531 
 
 
-
 
NC_008530  LGAS_0575  XRE family transcriptional regulator  34.29 
 
 		 115 aa  44.7  0.001  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  0.00000000000142648  normal  0.969931 
 
 
-
 
NC_009665  Shew185_2554  XRE family transcriptional regulator  37.5 
 
 		 71 aa  44.3  0.002  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_009997  Sbal195_3486  XRE family transcriptional regulator  37.5 
 
 		 71 aa  44.3  0.002  Shewanella baltica OS195  Bacteria  normal  0.106619  unclonable  0.00000623032 
 
 
-
 
NC_009997  Sbal195_3390  XRE family transcriptional regulator  37.5 
 
 		 71 aa  44.3  0.002  Shewanella baltica OS195  Bacteria  normal  1  hitchhiker  0.00303754 
 
 
-
 
NC_009997  Sbal195_1979  XRE family transcriptional regulator  37.5 
 
 		 71 aa  44.3  0.002  Shewanella baltica OS195  Bacteria  decreased coverage  0.000012505  normal  0.0449192 
 
 
-
 
NC_009665  Shew185_3362  XRE family transcriptional regulator  37.5 
 
 		 71 aa  44.3  0.002  Shewanella baltica OS185  Bacteria  normal  0.826369  n/a   
 
 
-
 
NC_009665  Shew185_3253  XRE family transcriptional regulator  37.5 
 
 		 71 aa  44.3  0.002  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_1974  XRE family transcriptional regulator  37.5 
 
 		 71 aa  44.3  0.002  Shewanella baltica OS185  Bacteria  normal  0.030681  n/a   
 
 
-
 
NC_009665  Shew185_1862  XRE family transcriptional regulator  37.5 
 
 		 71 aa  44.3  0.002  Shewanella baltica OS185  Bacteria  hitchhiker  0.000787798  n/a   
 
 
-
 
NC_009654  Mmwyl1_2471  putative prophage repressor  40 
 
 		 216 aa  43.9  0.002  Marinomonas sp. MWYL1  Bacteria  normal  0.894795  normal  1 
 
 
-
 
NC_008532  STER_0918  XRE family transcriptional regulator  28.57 
 
 		 229 aa  43.9  0.002  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.0000791351  n/a   
 
 
-
 
NC_009512  Pput_3482  XRE family transcriptional regulator  30.43 
 
 		 104 aa  43.1  0.003  Pseudomonas putida F1  Bacteria  normal  0.411907  normal  0.584278 
 
 
-
 
NC_009485  BBta_7699  putative transcriptional regulator  39.39 
 
 		 112 aa  43.1  0.004  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.829097  normal  0.153836 
 
 
-
 
NC_008942  Mlab_1603  adenine deaminase  36.36 
 
 		 347 aa  42.7  0.004  Methanocorpusculum labreanum Z  Archaea  hitchhiker  0.000000366307  hitchhiker  0.000640003 
 
 
-
 
NC_008345  Sfri_1656  transcriptional regulator, XRE family protein  45.95 
 
 		 72 aa  42.7  0.004  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.022858  n/a   
 
 
-
 
NC_010725  Mpop_4582  transcriptional regulator, XRE family  33.33 
 
 		 99 aa  42.7  0.005  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.752323 
 
 
-
 
NC_010814  Glov_0858  transcriptional regulator, XRE family  34.92 
 
 		 243 aa  42.7  0.005  Geobacter lovleyi SZ  Bacteria  normal  0.949499  n/a   
 
 
-
 
NC_002947  PP_2256  Cro/CI family transcriptional regulator  28.26 
 
 		 104 aa  42.4  0.006  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.033693 
 
 
-
 
NC_007974  Rmet_4900  hypothetical protein  41.82 
 
 		 105 aa  42.4  0.006  Cupriavidus metallidurans CH34  Bacteria  normal  0.978216  normal  0.040659 
 
 
-
 
NC_013730  Slin_1627  transcriptional regulator, XRE family  31.94 
 
 		 133 aa  42.4  0.006  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  0.0696983 
 
 
-
 
NC_010644  Emin_0455  XRE family transcriptional regulator  39.62 
 
 		 214 aa  42  0.008  Elusimicrobium minutum Pei191  Bacteria  normal  1  hitchhiker  0.0000000298649 
 
 
-
 
NC_009715  CCV52592_2042  putative cytochrome c  33.33 
 
 		 90 aa  42  0.009  Campylobacter curvus 525.92  Bacteria  normal  1  n/a   
 
 
-
 
NC_013730  Slin_5326  transcriptional regulator, XRE family  31.67 
 
 		 68 aa  41.6  0.01  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  0.134062 
 
 
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