Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0551 |
Symbol | |
ID | 8413405 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | - |
Start bp | 636290 |
End bp | 636922 |
Gene Length | 633 bp |
Protein Length | 210 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 645022124 |
Product | transcriptional regulator, XRE family |
Protein accession | YP_003179573 |
Protein GI | 257784356 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.401249 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0000933135 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAATACC AAATTGCTGA AGCACGTAAG CTTAGAAATA TTACGCAAGC TGAATTAGCT GAGAAAATGG GAACCACTCA GCAGACAGTT CAAAGATATG AGACTAACCA AGTTAACATC CGCATGGATA AGATGATTGA AATGTCCGAA ATCTTGAATG TGAGCCTGGC ATACCTTCTT GGAATGTCTA GTAGTCCAGA GATATCAGAA GTTTCTGATA TGGCACCTGT TCCACTCTTA GGCTCAATAG CTGCGGGCAC CCCTATTGAA ATGATTAGCG TTGATGAGAC TTATGACATC CCAGCAGACA TTCATGAGAG ATATCCGCAA GCTTTTCTTT TAAAAGTTGT CGGTGAGTCC ATGAACCGTG TTCTTCCTAA TGGTTGTTAT GCACTTATTA ACCCATGTAA AGAAGAAATT AAGCCTATGA AGGCATATGC AGTGTGTGTG AATGGCTTTG ATGCAACTAT TAAACGAGTA AAGCCTCTAT CGAATGGCTA TGAGCTAATC CCAGACAGCA TAGATCCTAC ATTTAGACCA CAAATATTTG ACTTTAATGA GATTGACACG CAGCCAATTT CGATTATTGG TGAAGTTATT TGGTATTTAG TTCCATTCGG ATTTGAAATC TAA
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Protein sequence | MKYQIAEARK LRNITQAELA EKMGTTQQTV QRYETNQVNI RMDKMIEMSE ILNVSLAYLL GMSSSPEISE VSDMAPVPLL GSIAAGTPIE MISVDETYDI PADIHERYPQ AFLLKVVGES MNRVLPNGCY ALINPCKEEI KPMKAYAVCV NGFDATIKRV KPLSNGYELI PDSIDPTFRP QIFDFNEIDT QPISIIGEVI WYLVPFGFEI
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