21 homologs were found in PanDaTox collection
for query gene Sfri_1656 on replicon NC_008345
Organism: Shewanella frigidimarina NCIMB 400



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008345  Sfri_1656  transcriptional regulator, XRE family protein  100 
 
 		 72 aa  147  4e-35  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.022858  n/a   
 
 
-
 
NC_009997  Sbal195_3486  XRE family transcriptional regulator  57.14 
 
 		 71 aa  88.2  3e-17  Shewanella baltica OS195  Bacteria  normal  0.106619  unclonable  0.00000623032 
 
 
-
 
NC_009997  Sbal195_3390  XRE family transcriptional regulator  57.14 
 
 		 71 aa  88.2  3e-17  Shewanella baltica OS195  Bacteria  normal  1  hitchhiker  0.00303754 
 
 
-
 
NC_009997  Sbal195_1979  XRE family transcriptional regulator  57.14 
 
 		 71 aa  88.2  3e-17  Shewanella baltica OS195  Bacteria  decreased coverage  0.000012505  normal  0.0449192 
 
 
-
 
NC_009665  Shew185_3362  XRE family transcriptional regulator  57.14 
 
 		 71 aa  88.2  3e-17  Shewanella baltica OS185  Bacteria  normal  0.826369  n/a   
 
 
-
 
NC_009665  Shew185_1862  XRE family transcriptional regulator  57.14 
 
 		 71 aa  88.2  3e-17  Shewanella baltica OS185  Bacteria  hitchhiker  0.000787798  n/a   
 
 
-
 
NC_009665  Shew185_1974  XRE family transcriptional regulator  57.14 
 
 		 71 aa  88.2  3e-17  Shewanella baltica OS185  Bacteria  normal  0.030681  n/a   
 
 
-
 
NC_009665  Shew185_2554  XRE family transcriptional regulator  57.14 
 
 		 71 aa  88.2  3e-17  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_3253  XRE family transcriptional regulator  57.14 
 
 		 71 aa  88.2  3e-17  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_009997  Sbal195_2029  XRE family transcriptional regulator  57.14 
 
 		 71 aa  88.2  4e-17  Shewanella baltica OS195  Bacteria  decreased coverage  0.0082126  normal  0.318531 
 
 
-
 
NC_007954  Sden_3260  transciptional regulator  52.17 
 
 		 76 aa  73.6  0.0000000000009  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.00055774  n/a   
 
 
-
 
NC_009052  Sbal_3609  XRE family transcriptional regulator  51.56 
 
 		 72 aa  72.8  0.000000000001  Shewanella baltica OS155  Bacteria  hitchhiker  0.000857822  n/a   
 
 
-
 
NC_011663  Sbal223_0773  transcriptional regulator, XRE family  56.25 
 
 		 72 aa  71.6  0.000000000003  Shewanella baltica OS223  Bacteria  hitchhiker  0.00619674  normal  0.231012 
 
 
-
 
NC_009665  Shew185_0746  XRE family transcriptional regulator  50 
 
 		 72 aa  71.2  0.000000000004  Shewanella baltica OS185  Bacteria  normal  0.205768  n/a   
 
 
-
 
NC_009997  Sbal195_0776  XRE family transcriptional regulator  50 
 
 		 72 aa  71.2  0.000000000004  Shewanella baltica OS195  Bacteria  normal  0.62299  hitchhiker  0.00396946 
 
 
-
 
NC_007971  Rmet_6072  putative transcriptional regulator Cro/CI family  45.95 
 
 		 233 aa  42.7  0.002  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.406393 
 
 
-
 
NC_011668  Sbal223_4446  putative phage repressor  42.55 
 
 		 209 aa  41.6  0.004  Shewanella baltica OS223  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007954  Sden_1186  transciptional regulator  36.51 
 
 		 212 aa  40.8  0.007  Shewanella denitrificans OS217  Bacteria  unclonable  0.00000000000178331  n/a   
 
 
-
 
NC_011757  Mchl_0251  transcriptional regulator, XRE family  40.74 
 
 		 116 aa  40.4  0.008  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011757  Mchl_1635  transcriptional regulator, XRE family  40.74 
 
 		 116 aa  40.4  0.008  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009565  TBFG_12052  transcriptional regulator  40.35 
 
 		 346 aa  40  0.01  Mycobacterium tuberculosis F11  Bacteria  normal  0.12403  normal  1 
 
 
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