34 homologs were found in PanDaTox collection
for query gene Sden_3260 on replicon NC_007954
Organism: Shewanella denitrificans OS217



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007954  Sden_3260  transciptional regulator  100 
 
 		 76 aa  159  1e-38  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.00055774  n/a   
 
 
-
 
NC_011663  Sbal223_0773  transcriptional regulator, XRE family  73.61 
 
 		 72 aa  119  1.9999999999999998e-26  Shewanella baltica OS223  Bacteria  hitchhiker  0.00619674  normal  0.231012 
 
 
-
 
NC_009052  Sbal_3609  XRE family transcriptional regulator  76.39 
 
 		 72 aa  117  7e-26  Shewanella baltica OS155  Bacteria  hitchhiker  0.000857822  n/a   
 
 
-
 
NC_009997  Sbal195_0776  XRE family transcriptional regulator  75 
 
 		 72 aa  115  1.9999999999999998e-25  Shewanella baltica OS195  Bacteria  normal  0.62299  hitchhiker  0.00396946 
 
 
-
 
NC_009665  Shew185_0746  XRE family transcriptional regulator  75 
 
 		 72 aa  115  1.9999999999999998e-25  Shewanella baltica OS185  Bacteria  normal  0.205768  n/a   
 
 
-
 
NC_009665  Shew185_3362  XRE family transcriptional regulator  56.52 
 
 		 71 aa  85.9  2e-16  Shewanella baltica OS185  Bacteria  normal  0.826369  n/a   
 
 
-
 
NC_009665  Shew185_3253  XRE family transcriptional regulator  56.52 
 
 		 71 aa  85.9  2e-16  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_009997  Sbal195_3486  XRE family transcriptional regulator  56.52 
 
 		 71 aa  85.9  2e-16  Shewanella baltica OS195  Bacteria  normal  0.106619  unclonable  0.00000623032 
 
 
-
 
NC_009997  Sbal195_3390  XRE family transcriptional regulator  56.52 
 
 		 71 aa  85.9  2e-16  Shewanella baltica OS195  Bacteria  normal  1  hitchhiker  0.00303754 
 
 
-
 
NC_009997  Sbal195_2029  XRE family transcriptional regulator  56.52 
 
 		 71 aa  85.9  2e-16  Shewanella baltica OS195  Bacteria  decreased coverage  0.0082126  normal  0.318531 
 
 
-
 
NC_009997  Sbal195_1979  XRE family transcriptional regulator  56.52 
 
 		 71 aa  85.9  2e-16  Shewanella baltica OS195  Bacteria  decreased coverage  0.000012505  normal  0.0449192 
 
 
-
 
NC_009665  Shew185_2554  XRE family transcriptional regulator  56.52 
 
 		 71 aa  85.9  2e-16  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_1974  XRE family transcriptional regulator  56.52 
 
 		 71 aa  85.9  2e-16  Shewanella baltica OS185  Bacteria  normal  0.030681  n/a   
 
 
-
 
NC_009665  Shew185_1862  XRE family transcriptional regulator  56.52 
 
 		 71 aa  85.9  2e-16  Shewanella baltica OS185  Bacteria  hitchhiker  0.000787798  n/a   
 
 
-
 
NC_008345  Sfri_1656  transcriptional regulator, XRE family protein  52.17 
 
 		 72 aa  73.6  0.0000000000009  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.022858  n/a   
 
 
-
 
NC_011830  Dhaf_1621  transcriptional regulator, XRE family  34.85 
 
 		 368 aa  45.4  0.0002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_008528  OEOE_0099  XRE family transcriptional regulator  35.48 
 
 		 178 aa  42.7  0.002  Oenococcus oeni PSU-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008527  LACR_0008  XRE family transcriptional regulator  33.33 
 
 		 107 aa  42.7  0.002  Lactococcus lactis subsp. cremoris SK11  Bacteria  hitchhiker  0.000363546  n/a   
 
 
-
 
NC_011658  BCAH187_A3349  DNA-binding protein  29.69 
 
 		 374 aa  42.4  0.002  Bacillus cereus AH187  Bacteria  normal  0.166445  n/a   
 
 
-
 
NC_003909  BCE_3344  DNA-binding protein  33.33 
 
 		 374 aa  42  0.003  Bacillus cereus ATCC 10987  Bacteria  normal  0.455978  n/a   
 
 
-
 
NC_007107  pE33L9_0007  DNA-binding protein  39.29 
 
 		 143 aa  41.6  0.003  Bacillus cereus E33L  Bacteria  normal  0.479978  n/a   
 
 
-
 
NC_005957  BT9727_3113  transcriptional regulator  33.33 
 
 		 374 aa  42  0.003  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.694615  n/a   
 
 
-
 
NC_007971  Rmet_6072  putative transcriptional regulator Cro/CI family  36.36 
 
 		 233 aa  41.2  0.005  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.406393 
 
 
-
 
NC_006274  BCZK3019  DNA-binding protein; transcriptional regulator  31.58 
 
 		 374 aa  41.2  0.005  Bacillus cereus E33L  Bacteria  normal  0.28018  n/a   
 
 
-
 
NC_011773  BCAH820_3347  DNA-binding protein  31.58 
 
 		 374 aa  41.2  0.005  Bacillus cereus AH820  Bacteria  n/a    normal  1 
 
 
-
 
NC_003909  BCE_1881  DNA-binding protein  37.5 
 
 		 142 aa  41.2  0.005  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_011772  BCG9842_B4236  hypothetical protein  33.33 
 
 		 149 aa  40.8  0.006  Bacillus cereus G9842  Bacteria  hitchhiker  0.00014165  hitchhiker  0.0000000209993 
 
 
-
 
NC_013385  Adeg_0117  transcriptional regulator, XRE family  39.34 
 
 		 118 aa  40.8  0.006  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3051  XRE family transcriptional regulator  31.58 
 
 		 242 aa  40.4  0.007  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0338218  n/a   
 
 
-
 
NC_011725  BCB4264_A1063  hypothetical protein  33.33 
 
 		 149 aa  40.4  0.007  Bacillus cereus B4264  Bacteria  hitchhiker  0.0001043  n/a   
 
 
-
 
NC_007530  GBAA_3373  DNA-binding protein  33.33 
 
 		 374 aa  40.4  0.008  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.645168  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0945  XRE family transcriptional regulator  33.33 
 
 		 149 aa  40.4  0.008  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.00000414379  n/a   
 
 
-
 
NC_005945  BAS3127  DNA-binding protein  33.33 
 
 		 374 aa  40.4  0.008  Bacillus anthracis str. Sterne  Bacteria  normal  0.81107  n/a   
 
 
-
 
NC_004116  SAG1716  Cro/CI family transcriptional regulator  38.46 
 
 		 197 aa  40.4  0.009  Streptococcus agalactiae 2603V/R  Bacteria  normal  0.229171  n/a   
 
 
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