More than 300 homologs were found in PanDaTox collection
for query gene Francci3_2837 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007777  Francci3_2837  binding-protein-dependent transport systems inner membrane component  100 
 
 
329 aa  645    Frankia sp. CcI3  Bacteria  normal  0.780745  normal  0.324349 
 
 
-
 
NC_009921  Franean1_3945  binding-protein-dependent transport systems inner membrane component  54.25 
 
 
319 aa  326  4.0000000000000003e-88  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0356101 
 
 
-
 
NC_009921  Franean1_1896  binding-protein-dependent transport systems inner membrane component  36.3 
 
 
314 aa  175  7e-43  Frankia sp. EAN1pec  Bacteria  normal  0.816179  normal 
 
 
-
 
NC_007777  Francci3_2253  binding-protein-dependent transport systems inner membrane component  37.7 
 
 
315 aa  174  1.9999999999999998e-42  Frankia sp. CcI3  Bacteria  decreased coverage  0.000833121  hitchhiker  0.00553591 
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  32.28 
 
 
299 aa  160  4e-38  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  35.96 
 
 
307 aa  146  5e-34  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  35.96 
 
 
307 aa  146  5e-34  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_013595  Sros_2365  sugar ABC transporter, permease protein  31.77 
 
 
288 aa  145  9e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  0.216835  normal 
 
 
-
 
NC_008699  Noca_4634  binding-protein-dependent transport systems inner membrane component  35.13 
 
 
292 aa  145  1e-33  Nocardioides sp. JS614  Bacteria  normal  0.219562  n/a   
 
 
-
 
NC_013205  Aaci_2047  binding-protein-dependent transport systems inner membrane component  31.83 
 
 
294 aa  142  9.999999999999999e-33  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.550241  n/a   
 
 
-
 
NC_013595  Sros_5739  ABC transporter permease  31.8 
 
 
318 aa  139  7e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.184804 
 
 
-
 
NC_010816  BLD_1493  MalF-type ABC sugar transport systems permease component  30.67 
 
 
319 aa  138  1e-31  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1094  binding-protein-dependent transport systems inner membrane component  29.18 
 
 
307 aa  138  2e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011884  Cyan7425_3980  binding-protein-dependent transport systems inner membrane component  31.05 
 
 
299 aa  137  2e-31  Cyanothece sp. PCC 7425  Bacteria  normal  hitchhiker  0.00655631 
 
 
-
 
NC_009939  Dgeo_2918  ABC-type sugar transport system, permease component  36.33 
 
 
305 aa  137  2e-31  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_1297  binding-protein-dependent transport systems inner membrane component  33.46 
 
 
279 aa  137  3.0000000000000003e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.983189  normal 
 
 
-
 
NC_013526  Tter_2302  binding-protein-dependent transport systems inner membrane component  31.31 
 
 
320 aa  137  3.0000000000000003e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.253823  n/a   
 
 
-
 
NC_012669  Bcav_0321  binding-protein-dependent transport systems inner membrane component  32.99 
 
 
316 aa  135  8e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_0077  binding-protein-dependent transport systems inner membrane component  31.46 
 
 
311 aa  135  9.999999999999999e-31  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2217  binding-protein-dependent transport systems inner membrane component  31.25 
 
 
305 aa  134  1.9999999999999998e-30  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0828  binding-protein-dependent transport systems inner membrane component  30.43 
 
 
316 aa  134  3e-30  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.194369 
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  34.49 
 
 
287 aa  133  3.9999999999999996e-30  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_3848  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
320 aa  133  3.9999999999999996e-30  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0230008  normal  0.429544 
 
 
-
 
NC_013131  Caci_8465  binding-protein-dependent transport systems inner membrane component  31.17 
 
 
315 aa  132  6e-30  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.511569  normal  0.0740219 
 
 
-
 
NC_007604  Synpcc7942_0526  ABC-type sugar transport systems permease components-like  31.85 
 
 
293 aa  132  6.999999999999999e-30  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2292  binding-protein-dependent transport systems inner membrane component  28.21 
 
 
306 aa  132  6.999999999999999e-30  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1656  binding-protein-dependent transport systems inner membrane component  32.71 
 
 
318 aa  132  1.0000000000000001e-29  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.152531  normal  0.26367 
 
 
-
 
NC_007644  Moth_1483  binding-protein dependent transport system inner membrane protein  31 
 
 
304 aa  132  1.0000000000000001e-29  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000121793  normal 
 
 
-
 
NC_010320  Teth514_2200  binding-protein-dependent transport systems inner membrane component  29.7 
 
 
299 aa  131  2.0000000000000002e-29  Thermoanaerobacter sp. X514  Bacteria  normal  0.426381  n/a   
 
 
-
 
NC_013526  Tter_2615  binding-protein-dependent transport systems inner membrane component  35.02 
 
 
307 aa  130  3e-29  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.0000296099  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2801  binding-protein-dependent transport systems inner membrane component  30.95 
 
 
288 aa  130  3e-29  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.254018  n/a   
 
 
-
 
NC_012669  Bcav_3990  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
317 aa  129  5.0000000000000004e-29  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_3242  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
317 aa  129  6e-29  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009616  Tmel_0752  binding-protein-dependent transport systems inner membrane component  29.18 
 
 
288 aa  129  8.000000000000001e-29  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2453  binding-protein-dependent transport systems inner membrane component  32.98 
 
 
314 aa  129  9.000000000000001e-29  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000200699  n/a   
 
 
-
 
NC_007802  Jann_2587  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
314 aa  128  1.0000000000000001e-28  Jannaschia sp. CCS1  Bacteria  decreased coverage  0.000137508  normal 
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  30.5 
 
 
309 aa  128  1.0000000000000001e-28  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010001  Cphy_3401  binding-protein-dependent transport systems inner membrane component  29.86 
 
 
305 aa  128  1.0000000000000001e-28  Clostridium phytofermentans ISDg  Bacteria  normal  0.028536  n/a   
 
 
-
 
NC_012669  Bcav_1469  binding-protein-dependent transport systems inner membrane component  32.38 
 
 
283 aa  127  2.0000000000000002e-28  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_0481  binding-protein-dependent transport systems inner membrane component  30.69 
 
 
310 aa  127  2.0000000000000002e-28  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2527  binding-protein-dependent transport systems inner membrane component  29.45 
 
 
309 aa  128  2.0000000000000002e-28  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.849073  n/a   
 
 
-
 
NC_011772  BCG9842_B4735  putative glycerol-3-phosphate ABC transporter, permease protein  30.82 
 
 
310 aa  127  3e-28  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_0477  ABC tranporter, permease protein  29.08 
 
 
315 aa  126  4.0000000000000003e-28  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2055  binding-protein-dependent transport systems inner membrane component  31.01 
 
 
415 aa  127  4.0000000000000003e-28  Meiothermus silvanus DSM 9946  Bacteria  normal  0.33288  normal  0.443347 
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  30.93 
 
 
306 aa  126  4.0000000000000003e-28  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_003909  BCE_0630  glycerol-3-phosphate ABC transporter, permease protein, putative  31.65 
 
 
310 aa  126  5e-28  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1695  binding-protein-dependent transport systems inner membrane component  32.62 
 
 
288 aa  126  5e-28  Thermotoga sp. RQ2  Bacteria  normal  0.967188  n/a   
 
 
-
 
NC_011658  BCAH187_A0698  putative glycerol-3-phosphate ABC transporter, permease protein  31.65 
 
 
310 aa  126  5e-28  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_3250  binding-protein-dependent transporter inner membrane component  30.6 
 
 
310 aa  126  5e-28  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A0604  putative glycerol-3-phosphate ABC transporter, permease protein  30.59 
 
 
310 aa  126  5e-28  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3898  binding-protein-dependent transport systems inner membrane component  33.44 
 
 
324 aa  126  6e-28  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_11550  carbohydrate ABC transporter membrane protein  33.33 
 
 
354 aa  125  7e-28  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.151535  normal  0.0144146 
 
 
-
 
NC_012850  Rleg_1867  binding-protein-dependent transport systems inner membrane component  31.68 
 
 
312 aa  125  8.000000000000001e-28  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS0536  glycerol-3-phosphate ABC transporter permease  31.48 
 
 
310 aa  125  1e-27  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0478  glycerol-3-phosphate ABC transporter, permease  31.48 
 
 
310 aa  124  1e-27  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0480  glycerol-3-phosphate ABC transporter, permease  31.48 
 
 
310 aa  125  1e-27  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0623  putative glycerol-3-phosphate ABC transporter, permease protein  31.48 
 
 
310 aa  125  1e-27  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007530  GBAA_0567  glycerol-3-phosphate ABC transporter permease protein  31.48 
 
 
310 aa  125  1e-27  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_1686  binding-protein-dependent transport systems inner membrane component  31.87 
 
 
312 aa  125  1e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.746865  normal 
 
 
-
 
NC_013721  HMPREF0424_1290  ABC transporter, permease protein  30.22 
 
 
311 aa  125  1e-27  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013739  Cwoe_4453  binding-protein-dependent transport systems inner membrane component  33.77 
 
 
319 aa  125  1e-27  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_1357  binding-protein-dependent transport systems inner membrane component  30.48 
 
 
316 aa  125  1e-27  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_3640  binding-protein-dependent transport systems inner membrane component  31.58 
 
 
298 aa  125  1e-27  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0176  binding-protein dependent transport system inner membrane protein  36.47 
 
 
314 aa  124  2e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2611  binding-protein-dependent transport systems inner membrane component  32.73 
 
 
280 aa  124  2e-27  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1361  binding-protein-dependent transport systems inner membrane component  32.1 
 
 
315 aa  124  2e-27  Acidothermus cellulolyticus 11B  Bacteria  normal  0.193472  normal  0.165724 
 
 
-
 
NC_012880  Dd703_0068  binding-protein-dependent transport systems inner membrane component  27.43 
 
 
315 aa  124  2e-27  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_29330  permease component of ABC-type sugar transporter  29.93 
 
 
321 aa  124  2e-27  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3147  binding-protein-dependent transport systems inner membrane component  33.01 
 
 
319 aa  123  3e-27  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.00382098  n/a   
 
 
-
 
NC_011004  Rpal_0131  binding-protein-dependent transport systems inner membrane component  33.68 
 
 
319 aa  124  3e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.128042  n/a   
 
 
-
 
NC_013739  Cwoe_3982  binding-protein-dependent transport systems inner membrane component  31.88 
 
 
316 aa  124  3e-27  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  29.41 
 
 
295 aa  124  3e-27  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3573  binding-protein-dependent transport systems inner membrane component  31.51 
 
 
353 aa  124  3e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.500594  normal 
 
 
-
 
NC_013526  Tter_2136  binding-protein-dependent transport systems inner membrane component  32.87 
 
 
307 aa  124  3e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_1549  binding-protein-dependent transport systems inner membrane component  31.95 
 
 
293 aa  123  4e-27  Xylella fastidiosa M23  Bacteria  normal  0.563461  n/a   
 
 
-
 
NC_013521  Sked_21160  carbohydrate ABC transporter membrane protein  31.77 
 
 
314 aa  123  4e-27  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.103465  normal  0.100515 
 
 
-
 
NC_008578  Acel_2048  binding-protein-dependent transport systems inner membrane component  31.8 
 
 
332 aa  123  5e-27  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2024  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
303 aa  123  5e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000249122  n/a   
 
 
-
 
NC_010513  Xfasm12_1606  ABC transporter sugar permease  33.2 
 
 
293 aa  123  5e-27  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4000  binding-protein-dependent transport systems inner membrane component  34.38 
 
 
318 aa  122  6e-27  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.224944  normal  0.135837 
 
 
-
 
NC_013946  Mrub_2532  binding-protein-dependent transport systems inner membrane component  31.01 
 
 
417 aa  122  7e-27  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.636087 
 
 
-
 
NC_009664  Krad_0295  binding-protein-dependent transport systems inner membrane component  32.48 
 
 
306 aa  122  7e-27  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0472746 
 
 
-
 
NC_013525  Tter_1290  binding-protein-dependent transport systems inner membrane component  34.31 
 
 
297 aa  122  7e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011894  Mnod_6753  binding-protein-dependent transport systems inner membrane component  34.33 
 
 
310 aa  122  8e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.114113  n/a   
 
 
-
 
NC_009565  TBFG_12077  sugar ABC transporter membrane protein  30.99 
 
 
300 aa  122  8e-27  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3149  binding-protein-dependent transport systems inner membrane component  36.15 
 
 
315 aa  122  9e-27  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0566553  normal  0.330059 
 
 
-
 
NC_008541  Arth_3328  binding-protein-dependent transport systems inner membrane component  31.47 
 
 
314 aa  122  9e-27  Arthrobacter sp. FB24  Bacteria  normal  0.0166533  n/a   
 
 
-
 
NC_012793  GWCH70_1390  binding-protein-dependent transport systems inner membrane component  30.58 
 
 
308 aa  122  9e-27  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_5595  binding-protein-dependent transport systems inner membrane component  33.11 
 
 
297 aa  122  9e-27  Delftia acidovorans SPH-1  Bacteria  normal  0.475488  normal  0.36412 
 
 
-
 
NC_007513  Syncc9902_1051  lactose transport system permease protein  31.46 
 
 
306 aa  122  9.999999999999999e-27  Synechococcus sp. CC9902  Bacteria  normal  0.390377  n/a   
 
 
-
 
NC_014212  Mesil_2465  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
296 aa  122  9.999999999999999e-27  Meiothermus silvanus DSM 9946  Bacteria  normal  0.603266  normal  0.170133 
 
 
-
 
NC_012848  Rleg_4750  binding-protein-dependent transport systems inner membrane component  32.53 
 
 
299 aa  121  9.999999999999999e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.62916  normal  0.701692 
 
 
-
 
NC_011368  Rleg2_5350  binding-protein-dependent transport systems inner membrane component  26.35 
 
 
308 aa  122  9.999999999999999e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.84186  normal  0.48209 
 
 
-
 
NC_009921  Franean1_7038  binding-protein-dependent transport systems inner membrane component  31.15 
 
 
309 aa  121  9.999999999999999e-27  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2193  binding-protein-dependent transport systems inner membrane component  30.25 
 
 
306 aa  120  1.9999999999999998e-26  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.692762  normal 
 
 
-
 
NC_014158  Tpau_3529  binding-protein-dependent transport systems inner membrane component  29.39 
 
 
311 aa  121  1.9999999999999998e-26  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2459  binding-protein-dependent transport systems inner membrane component  30.93 
 
 
331 aa  120  1.9999999999999998e-26  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.216304  n/a   
 
 
-
 
NC_009972  Haur_1151  binding-protein-dependent transport systems inner membrane component  30.43 
 
 
314 aa  120  1.9999999999999998e-26  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.59424  n/a   
 
 
-
 
NC_010001  Cphy_0593  binding-protein-dependent transport systems inner membrane component  31.62 
 
 
308 aa  121  1.9999999999999998e-26  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000379306  n/a   
 
 
-
 
NC_013411  GYMC61_1728  binding-protein-dependent transport systems inner membrane component  29.63 
 
 
299 aa  120  3e-26  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
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