More than 300 homologs were found in PanDaTox collection
for query gene Francci3_2253 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007777  Francci3_2253  binding-protein-dependent transport systems inner membrane component  100 
 
 
315 aa  616  1e-175  Frankia sp. CcI3  Bacteria  decreased coverage  0.000833121  hitchhiker  0.00553591 
 
 
-
 
NC_009921  Franean1_1896  binding-protein-dependent transport systems inner membrane component  76.62 
 
 
314 aa  408  1e-113  Frankia sp. EAN1pec  Bacteria  normal  0.816179  normal 
 
 
-
 
NC_007777  Francci3_2837  binding-protein-dependent transport systems inner membrane component  37.55 
 
 
329 aa  181  2e-44  Frankia sp. CcI3  Bacteria  normal  0.780745  normal  0.324349 
 
 
-
 
NC_009921  Franean1_3945  binding-protein-dependent transport systems inner membrane component  36.3 
 
 
319 aa  159  5e-38  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0356101 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  37.26 
 
 
307 aa  155  8e-37  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  37.26 
 
 
307 aa  155  8e-37  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_012850  Rleg_3429  binding-protein-dependent transport systems inner membrane component  32.01 
 
 
307 aa  150  3e-35  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3982  binding-protein-dependent transport systems inner membrane component  32.32 
 
 
316 aa  142  8e-33  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2292  binding-protein-dependent transport systems inner membrane component  32 
 
 
306 aa  140  3e-32  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2949  binding-protein-dependent transport systems inner membrane component  36.47 
 
 
302 aa  140  3e-32  Sinorhizobium medicae WSM419  Bacteria  normal  0.261022  normal 
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  31.07 
 
 
306 aa  139  7e-32  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_011369  Rleg2_1686  binding-protein-dependent transport systems inner membrane component  33.81 
 
 
312 aa  138  1e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.746865  normal 
 
 
-
 
NC_013526  Tter_2217  binding-protein-dependent transport systems inner membrane component  30.37 
 
 
305 aa  137  2e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009939  Dgeo_2918  ABC-type sugar transport system, permease component  34.55 
 
 
305 aa  135  6.0000000000000005e-31  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_012850  Rleg_1867  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
312 aa  135  7.000000000000001e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5739  ABC transporter permease  29.12 
 
 
318 aa  135  9.999999999999999e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.184804 
 
 
-
 
NC_012669  Bcav_3990  binding-protein-dependent transport systems inner membrane component  32.84 
 
 
317 aa  135  9.999999999999999e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2193  binding-protein-dependent transport systems inner membrane component  32.21 
 
 
306 aa  134  1.9999999999999998e-30  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.692762  normal 
 
 
-
 
NC_013521  Sked_21160  carbohydrate ABC transporter membrane protein  35.19 
 
 
314 aa  133  5e-30  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.103465  normal  0.100515 
 
 
-
 
NC_011661  Dtur_0377  binding-protein-dependent transport systems inner membrane component  29.74 
 
 
294 aa  132  6.999999999999999e-30  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_1022  binding-protein-dependent transport systems inner membrane component  32.27 
 
 
294 aa  132  1.0000000000000001e-29  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_1304  MalF-type ABC sugar transport systems permease component  30.51 
 
 
334 aa  131  1.0000000000000001e-29  Bifidobacterium longum DJO10A  Bacteria  decreased coverage  0.00913134  n/a   
 
 
-
 
NC_013526  Tter_2000  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
319 aa  131  2.0000000000000002e-29  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_0185  binding-protein-dependent transport systems inner membrane component  32.85 
 
 
315 aa  130  3e-29  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0941  binding-protein-dependent transport systems inner membrane component  35.16 
 
 
313 aa  130  4.0000000000000003e-29  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.737632 
 
 
-
 
NC_012669  Bcav_1469  binding-protein-dependent transport systems inner membrane component  31.42 
 
 
283 aa  128  1.0000000000000001e-28  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_1483  binding-protein dependent transport system inner membrane protein  31.56 
 
 
304 aa  128  1.0000000000000001e-28  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000121793  normal 
 
 
-
 
NC_007778  RPB_0176  binding-protein dependent transport system inner membrane protein  31.84 
 
 
314 aa  128  2.0000000000000002e-28  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_4634  binding-protein-dependent transport systems inner membrane component  32.25 
 
 
292 aa  127  2.0000000000000002e-28  Nocardioides sp. JS614  Bacteria  normal  0.219562  n/a   
 
 
-
 
NC_010577  XfasM23_1549  binding-protein-dependent transport systems inner membrane component  30.25 
 
 
293 aa  127  2.0000000000000002e-28  Xylella fastidiosa M23  Bacteria  normal  0.563461  n/a   
 
 
-
 
NC_010513  Xfasm12_1606  ABC transporter sugar permease  29.89 
 
 
293 aa  127  3e-28  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2615  binding-protein-dependent transport systems inner membrane component  32.43 
 
 
307 aa  127  3e-28  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.0000296099  n/a   
 
 
-
 
NC_009767  Rcas_0115  binding-protein-dependent transport systems inner membrane component  31.35 
 
 
303 aa  126  4.0000000000000003e-28  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.013229  normal 
 
 
-
 
NC_010184  BcerKBAB4_2801  binding-protein-dependent transport systems inner membrane component  29.76 
 
 
288 aa  126  6e-28  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.254018  n/a   
 
 
-
 
NC_013739  Cwoe_4882  binding-protein-dependent transport systems inner membrane component  30 
 
 
313 aa  125  8.000000000000001e-28  Conexibacter woesei DSM 14684  Bacteria  normal  0.115668  normal 
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  32.97 
 
 
287 aa  125  9e-28  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1297  binding-protein-dependent transport systems inner membrane component  32.09 
 
 
279 aa  124  1e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.983189  normal 
 
 
-
 
NC_007958  RPD_3149  binding-protein-dependent transport systems inner membrane component  31.44 
 
 
315 aa  125  1e-27  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0566553  normal  0.330059 
 
 
-
 
NC_012848  Rleg_4750  binding-protein-dependent transport systems inner membrane component  31.09 
 
 
299 aa  124  1e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.62916  normal  0.701692 
 
 
-
 
NC_011004  Rpal_0131  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
319 aa  124  2e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.128042  n/a   
 
 
-
 
NC_011981  Avi_7347  ABC transporter membrane spanning protein (sugar)  31.58 
 
 
320 aa  124  2e-27  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3573  binding-protein-dependent transport systems inner membrane component  31.62 
 
 
353 aa  124  2e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.500594  normal 
 
 
-
 
NC_012034  Athe_0615  binding-protein-dependent transport systems inner membrane component  26.74 
 
 
296 aa  124  2e-27  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_1357  binding-protein-dependent transport systems inner membrane component  28.73 
 
 
316 aa  124  2e-27  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_3122  binding-protein-dependent transport systems inner membrane component  33.58 
 
 
305 aa  123  3e-27  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.99861  hitchhiker  0.000381845 
 
 
-
 
NC_013093  Amir_4610  binding-protein-dependent transport systems inner membrane component  32.16 
 
 
311 aa  124  3e-27  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0647  binding-protein-dependent transport systems inner membrane component  31.23 
 
 
325 aa  124  3e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010483  TRQ2_1695  binding-protein-dependent transport systems inner membrane component  30.86 
 
 
288 aa  123  4e-27  Thermotoga sp. RQ2  Bacteria  normal  0.967188  n/a   
 
 
-
 
NC_013172  Bfae_05100  permease component of ABC-type sugar transporter  32.03 
 
 
316 aa  123  4e-27  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  30.37 
 
 
309 aa  122  6e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009667  Oant_0639  binding-protein-dependent transport systems inner membrane component  32.08 
 
 
305 aa  122  6e-27  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.371496  n/a   
 
 
-
 
NC_009667  Oant_1668  binding-protein-dependent transport systems inner membrane component  31.13 
 
 
310 aa  122  6e-27  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2024  binding-protein-dependent transport systems inner membrane component  29.1 
 
 
303 aa  122  7e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000249122  n/a   
 
 
-
 
NC_013526  Tter_2658  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
309 aa  122  7e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.43514  n/a   
 
 
-
 
NC_008025  Dgeo_1168  binding-protein-dependent transport systems inner membrane component  34.94 
 
 
310 aa  122  7e-27  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.155614  normal 
 
 
-
 
NC_011899  Hore_20510  binding-protein-dependent transport systems inner membrane component  29.67 
 
 
290 aa  122  7e-27  Halothermothrix orenii H 168  Bacteria  normal  0.0790749  n/a   
 
 
-
 
NC_013721  HMPREF0424_1315  ABC transporter, permease protein  33.45 
 
 
301 aa  122  8e-27  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_009565  TBFG_12339  sugar-transport integral membrane protein ABC transporter uspA  34.6 
 
 
290 aa  122  8e-27  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0462  binding-protein-dependent transport systems inner membrane component  34.83 
 
 
301 aa  122  9.999999999999999e-27  Frankia sp. CcI3  Bacteria  normal  0.0599651  normal  0.184722 
 
 
-
 
NC_008782  Ajs_0861  binding-protein-dependent transport systems inner membrane component  30 
 
 
293 aa  121  9.999999999999999e-27  Acidovorax sp. JS42  Bacteria  normal  normal  0.533828 
 
 
-
 
NC_011992  Dtpsy_0790  binding-protein-dependent transport systems inner membrane component  30 
 
 
293 aa  121  9.999999999999999e-27  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0238  binding-protein-dependent transport systems inner membrane component  34.72 
 
 
329 aa  122  9.999999999999999e-27  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.557491 
 
 
-
 
NC_004311  BRA1182  sugar ABC transporter, permease protein, putative  30.74 
 
 
319 aa  121  1.9999999999999998e-26  Brucella suis 1330  Bacteria  normal  0.547049  n/a   
 
 
-
 
NC_009504  BOV_A1085  putative sugar ABC transporter, permease protein  30.74 
 
 
319 aa  120  1.9999999999999998e-26  Brucella ovis ATCC 25840  Bacteria  normal  0.589946  n/a   
 
 
-
 
NC_009664  Krad_0295  binding-protein-dependent transport systems inner membrane component  32.57 
 
 
306 aa  121  1.9999999999999998e-26  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0472746 
 
 
-
 
NC_013501  Rmar_0359  binding-protein-dependent transport systems inner membrane component  31.16 
 
 
300 aa  120  3e-26  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_1549  MalF-type ABC sugar transport systems permease component  28.78 
 
 
317 aa  120  3e-26  Bifidobacterium longum DJO10A  Bacteria  normal  0.649517  n/a   
 
 
-
 
NC_007333  Tfu_1618  binding-protein-dependent transport protein  35 
 
 
296 aa  120  3.9999999999999996e-26  Thermobifida fusca YX  Bacteria  normal  0.14282  n/a   
 
 
-
 
NC_011368  Rleg2_4663  binding-protein-dependent transport systems inner membrane component  30.22 
 
 
299 aa  120  3.9999999999999996e-26  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.456499 
 
 
-
 
NC_013131  Caci_8465  binding-protein-dependent transport systems inner membrane component  32.48 
 
 
315 aa  120  3.9999999999999996e-26  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.511569  normal  0.0740219 
 
 
-
 
NC_013526  Tter_2527  binding-protein-dependent transport systems inner membrane component  32.18 
 
 
309 aa  119  4.9999999999999996e-26  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.849073  n/a   
 
 
-
 
NC_013172  Bfae_28370  carbohydrate ABC transporter membrane protein  31.85 
 
 
287 aa  119  6e-26  Brachybacterium faecium DSM 4810  Bacteria  normal  0.096742  n/a   
 
 
-
 
NC_010524  Lcho_3242  binding-protein-dependent transport systems inner membrane component  30.08 
 
 
317 aa  119  6e-26  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009523  RoseRS_4568  binding-protein-dependent transport systems inner membrane component  29.63 
 
 
352 aa  119  7e-26  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_5053  binding-protein-dependent transport systems inner membrane component  30.71 
 
 
318 aa  119  7e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0625824  normal 
 
 
-
 
NC_014165  Tbis_3250  binding-protein-dependent transporter inner membrane component  30.68 
 
 
310 aa  119  9e-26  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  27.65 
 
 
299 aa  119  9e-26  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG0035  sugar ABC transporter, permease protein  30.04 
 
 
295 aa  118  9.999999999999999e-26  Streptococcus agalactiae 2603V/R  Bacteria  normal  0.265224  n/a   
 
 
-
 
NC_010465  YPK_3708  binding-protein-dependent transport systems inner membrane component  30.42 
 
 
294 aa  118  9.999999999999999e-26  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_006369  lpl1695  hypothetical protein  28.98 
 
 
292 aa  118  9.999999999999999e-26  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_010159  YpAngola_A4017  carbohydrate ABC transporter permease  30.42 
 
 
294 aa  119  9.999999999999999e-26  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_2682  binding-protein-dependent transport systems inner membrane component  30.51 
 
 
293 aa  118  9.999999999999999e-26  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.990678  normal 
 
 
-
 
NC_013525  Tter_1094  binding-protein-dependent transport systems inner membrane component  31.85 
 
 
307 aa  118  9.999999999999999e-26  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_014151  Cfla_1127  binding-protein-dependent transport systems inner membrane component  29.67 
 
 
328 aa  118  9.999999999999999e-26  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.190953  hitchhiker  0.00155627 
 
 
-
 
NC_013947  Snas_0204  binding-protein-dependent transport systems inner membrane component  28.62 
 
 
299 aa  118  9.999999999999999e-26  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.497209  normal  0.169553 
 
 
-
 
NC_009565  TBFG_12077  sugar ABC transporter membrane protein  30.37 
 
 
300 aa  118  9.999999999999999e-26  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7515  binding-protein-dependent transport systems inner membrane component  32.03 
 
 
314 aa  118  9.999999999999999e-26  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0774  binding-protein-dependent transport systems inner membrane component  29.24 
 
 
293 aa  118  9.999999999999999e-26  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1969  binding-protein-dependent transport systems inner membrane component  31.05 
 
 
296 aa  118  9.999999999999999e-26  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1907  binding-protein-dependent transport systems inner membrane component  30.69 
 
 
296 aa  118  9.999999999999999e-26  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0961638  n/a   
 
 
-
 
NC_009708  YpsIP31758_3574  carbohydrate ABC transporter permease  30.42 
 
 
294 aa  118  9.999999999999999e-26  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4135  binding-protein-dependent transport systems inner membrane component  31.99 
 
 
302 aa  118  1.9999999999999998e-25  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3365  binding-protein-dependent transport systems inner membrane component  29.72 
 
 
292 aa  118  1.9999999999999998e-25  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012880  Dd703_2034  binding-protein-dependent transport systems inner membrane component  30.69 
 
 
296 aa  117  1.9999999999999998e-25  Dickeya dadantii Ech703  Bacteria  normal  0.963086  n/a   
 
 
-
 
NC_013521  Sked_11550  carbohydrate ABC transporter membrane protein  30.41 
 
 
354 aa  118  1.9999999999999998e-25  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.151535  normal  0.0144146 
 
 
-
 
NC_009485  BBta_1755  ABC transporter permease  30.42 
 
 
312 aa  117  1.9999999999999998e-25  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.576454  normal  0.392142 
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  27.41 
 
 
295 aa  117  1.9999999999999998e-25  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0362  binding-protein-dependent transport systems inner membrane component  26.94 
 
 
312 aa  117  1.9999999999999998e-25  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.541424  n/a   
 
 
-
 
NC_012848  Rleg_5199  binding-protein-dependent transport systems inner membrane component  28.11 
 
 
312 aa  117  1.9999999999999998e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0867066 
 
 
-
 
NC_009921  Franean1_6155  binding-protein-dependent transport systems inner membrane component  33.87 
 
 
314 aa  117  1.9999999999999998e-25  Frankia sp. EAN1pec  Bacteria  normal  normal  0.602871 
 
 
-
 
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