More than 300 homologs were found in PanDaTox collection
for query gene DvMF_2188 on replicon NC_011769
Organism: Desulfovibrio vulgaris str. 'Miyazaki F'



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011769  DvMF_2188  response regulator receiver protein  100 
 
 
119 aa  233  7e-61  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008751  Dvul_2730  response regulator receiver protein  89.08 
 
 
119 aa  213  9e-55  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.245579 
 
 
-
 
NC_007519  Dde_0603  response regulator receiver domain-containing protein  78.99 
 
 
119 aa  192  1e-48  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.743939  n/a   
 
 
-
 
NC_013173  Dbac_1989  response regulator receiver protein  77.78 
 
 
128 aa  180  5.0000000000000004e-45  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0231  response regulator receiver protein  70.34 
 
 
120 aa  171  2.9999999999999996e-42  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.12726 
 
 
-
 
NC_008554  Sfum_3288  response regulator receiver protein  42.37 
 
 
136 aa  94.4  5e-19  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_0338  response regulator receiver modulated metal dependent phosphohydrolase  39.09 
 
 
513 aa  82.4  0.000000000000002  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.102838 
 
 
-
 
NC_008609  Ppro_0435  response regulator receiver protein  36.84 
 
 
124 aa  81.3  0.000000000000004  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00876892  n/a   
 
 
-
 
NC_002939  GSU0598  sigma-54 dependent DNA-binding response regulator  36.75 
 
 
470 aa  81.3  0.000000000000005  Geobacter sulfurreducens PCA  Bacteria  normal  0.885444  n/a   
 
 
-
 
NC_011901  Tgr7_0038  response regulator receiver protein  37.96 
 
 
455 aa  80.5  0.000000000000008  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2401  two component, sigma54 specific, Fis family transcriptional regulator  35.04 
 
 
449 aa  80.1  0.000000000000009  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_03881  fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein  33.62 
 
 
441 aa  79  0.00000000000002  Escherichia coli BL21(DE3)  Bacteria  normal  0.0124745  n/a   
 
 
-
 
CP001637  EcDH1_3989  two component, sigma54 specific, transcriptional regulator, Fis family  33.62 
 
 
441 aa  79  0.00000000000002  Escherichia coli DH1  Bacteria  normal  0.716922  n/a   
 
 
-
 
NC_011353  ECH74115_5475  transcriptional regulatory protein ZraR  33.62 
 
 
441 aa  79  0.00000000000002  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_03834  hypothetical protein  33.62 
 
 
441 aa  79  0.00000000000002  Escherichia coli BL21  Bacteria  normal  0.0118236  n/a   
 
 
-
 
NC_013173  Dbac_2668  response regulator receiver protein  36.21 
 
 
675 aa  79.3  0.00000000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_3201  response regulator receiver domain-containing protein  38.66 
 
 
143 aa  79  0.00000000000002  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_009800  EcHS_A4238  transcriptional regulatory protein ZraR  33.62 
 
 
441 aa  79  0.00000000000002  Escherichia coli HS  Bacteria  normal  0.020936  n/a   
 
 
-
 
NC_009801  EcE24377A_4549  transcriptional regulatory protein ZraR  33.62 
 
 
441 aa  79  0.00000000000002  Escherichia coli E24377A  Bacteria  hitchhiker  0.000369022  n/a   
 
 
-
 
NC_010658  SbBS512_E4497  transcriptional regulatory protein ZraR  33.62 
 
 
441 aa  79  0.00000000000002  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.0000279415  n/a   
 
 
-
 
NC_011769  DvMF_2107  response regulator receiver protein  35.34 
 
 
768 aa  79.3  0.00000000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_010468  EcolC_4021  transcriptional regulatory protein ZraR  33.62 
 
 
441 aa  79  0.00000000000002  Escherichia coli ATCC 8739  Bacteria  normal  0.0128092  normal  0.0227655 
 
 
-
 
NC_010498  EcSMS35_4454  transcriptional regulatory protein ZraR  33.62 
 
 
441 aa  79  0.00000000000002  Escherichia coli SMS-3-5  Bacteria  normal  0.209341  hitchhiker  0.000519331 
 
 
-
 
NC_007517  Gmet_2924  two component, sigma54 specific, Fis family transcriptional regulator  35.9 
 
 
470 aa  77.8  0.00000000000005  Geobacter metallireducens GS-15  Bacteria  normal  0.777319  hitchhiker  0.0000000000564278 
 
 
-
 
NC_011080  SNSL254_A4507  transcriptional regulatory protein ZraR  32.76 
 
 
441 aa  77.8  0.00000000000005  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.0570238 
 
 
-
 
NC_011094  SeSA_A4385  transcriptional regulatory protein ZraR  32.76 
 
 
441 aa  77.4  0.00000000000006  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.712665 
 
 
-
 
NC_011205  SeD_A4581  transcriptional regulatory protein ZraR  32.76 
 
 
441 aa  77.4  0.00000000000006  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2387  two component, sigma-54 specific, Fis family transcriptional regulator  35.45 
 
 
510 aa  77.4  0.00000000000006  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_2959  two component, sigma54 specific, transcriptional regulator, Fis family  34.95 
 
 
513 aa  77  0.00000000000007  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1988  two component, sigma54 specific, transcriptional regulator, Fis family  36.21 
 
 
509 aa  77  0.00000000000009  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B4418  transcriptional regulatory protein ZraR  31.9 
 
 
441 aa  76.6  0.0000000000001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.298897  n/a   
 
 
-
 
NC_011083  SeHA_C4505  transcriptional regulatory protein ZraR  32.76 
 
 
441 aa  76.3  0.0000000000001  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.11324 
 
 
-
 
NC_011883  Ddes_0853  two component, sigma54 specific, transcriptional regulator, Fis family  34.26 
 
 
459 aa  76.3  0.0000000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.0538681  n/a   
 
 
-
 
NC_011145  AnaeK_1869  two component, sigma54 specific, transcriptional regulator, Fis family  40.45 
 
 
464 aa  75.1  0.0000000000003  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1055  two component, sigma54 specific, Fis family transcriptional regulator  35.78 
 
 
508 aa  75.1  0.0000000000003  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00334907 
 
 
-
 
NC_008825  Mpe_A0915  two-component response regulator CbrB  31.03 
 
 
482 aa  75.1  0.0000000000003  Methylibium petroleiphilum PM1  Bacteria  normal  0.208777  normal 
 
 
-
 
NC_004310  BR1115  nitrogen regulation protein NtrX  36.36 
 
 
453 aa  74.7  0.0000000000004  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_1073  nitrogen regulation protein NtrX  36.36 
 
 
453 aa  74.7  0.0000000000004  Brucella ovis ATCC 25840  Bacteria  normal  0.13211  n/a   
 
 
-
 
NC_008554  Sfum_0618  response regulator receiver protein  38.05 
 
 
157 aa  74.7  0.0000000000004  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_0097  two component, sigma54 specific, transcriptional regulator, Fis family  32.08 
 
 
448 aa  74.7  0.0000000000004  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0632  response regulator receiver protein  34.21 
 
 
135 aa  74.3  0.0000000000005  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_2242  two component, sigma54 specific, transcriptional regulator, Fis family  34.86 
 
 
464 aa  73.9  0.0000000000006  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.719582 
 
 
-
 
NC_007760  Adeh_2009  two component, sigma54 specific, Fis family transcriptional regulator  40.45 
 
 
463 aa  74.3  0.0000000000006  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0168  two component, sigma54 specific, Fis family transcriptional regulator  36.79 
 
 
459 aa  74.3  0.0000000000006  Desulfovibrio vulgaris DP4  Bacteria  normal  0.564625  normal  0.730975 
 
 
-
 
NC_010725  Mpop_0571  two component transcriptional regulator, Fis family  34.58 
 
 
200 aa  73.6  0.0000000000008  Methylobacterium populi BJ001  Bacteria  normal  normal  0.0260765 
 
 
-
 
NC_011891  A2cp1_1954  two component, sigma54 specific, transcriptional regulator, Fis family  40.45 
 
 
464 aa  73.6  0.0000000000008  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.611403  n/a   
 
 
-
 
NC_008751  Dvul_0017  two component, sigma54 specific, Fis family transcriptional regulator  34.45 
 
 
459 aa  73.6  0.0000000000008  Desulfovibrio vulgaris DP4  Bacteria  normal  0.120309  normal 
 
 
-
 
NC_010424  Daud_2177  response regulator receiver protein  37.93 
 
 
120 aa  73.2  0.000000000001  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2200  two component, sigma54 specific, transcriptional regulator, Fis family  33.96 
 
 
459 aa  72.8  0.000000000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_010172  Mext_0596  response regulator receiver  34.58 
 
 
209 aa  73.2  0.000000000001  Methylobacterium extorquens PA1  Bacteria  normal  0.186654  normal  0.0367411 
 
 
-
 
NC_007517  Gmet_2679  response regulator receiver domain-containing protein  33.33 
 
 
129 aa  72.8  0.000000000001  Geobacter metallireducens GS-15  Bacteria  normal  0.380915  normal  0.27601 
 
 
-
 
NC_010338  Caul_4650  two component Fis family transcriptional regulator  39.78 
 
 
185 aa  73.2  0.000000000001  Caulobacter sp. K31  Bacteria  normal  0.157777  normal 
 
 
-
 
NC_008009  Acid345_2604  two component, sigma54 specific, Fis family transcriptional regulator  34.78 
 
 
459 aa  73.2  0.000000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_3325  two component Fis family transcriptional regulator  37.04 
 
 
199 aa  72.8  0.000000000001  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.363618  normal  0.0552341 
 
 
-
 
NC_008554  Sfum_0648  response regulator receiver protein  38.94 
 
 
151 aa  72.8  0.000000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0092  response regulator receiver protein  35.09 
 
 
682 aa  73.2  0.000000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_1798  two component, sigma54 specific, Fis family transcriptional regulator  38.2 
 
 
466 aa  73.6  0.000000000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.634231  normal 
 
 
-
 
NC_011146  Gbem_2408  two component, sigma54 specific, transcriptional regulator, Fis family  34.48 
 
 
482 aa  72.8  0.000000000001  Geobacter bemidjiensis Bem  Bacteria  normal  0.179219  n/a   
 
 
-
 
NC_011757  Mchl_0607  response regulator receiver protein  34.58 
 
 
200 aa  73.6  0.000000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.307658  normal  0.154969 
 
 
-
 
NC_012918  GM21_1810  two component, sigma54 specific, transcriptional regulator, Fis family  34.48 
 
 
482 aa  72.8  0.000000000001  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00345901 
 
 
-
 
NC_009943  Dole_1649  two component, sigma54 specific, Fis family transcriptional regulator  33.33 
 
 
479 aa  72  0.000000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1117  response regulator  32.46 
 
 
127 aa  72.8  0.000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0684  two component, sigma54 specific, transcriptional regulator, Fis family  39.82 
 
 
469 aa  72.4  0.000000000002  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000000150794 
 
 
-
 
NC_012918  GM21_2553  response regulator receiver protein  32.46 
 
 
126 aa  72.4  0.000000000002  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.1194499999999997e-20 
 
 
-
 
NC_013205  Aaci_2784  response regulator receiver protein  35.96 
 
 
125 aa  72.4  0.000000000002  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.0945133  n/a   
 
 
-
 
NC_011146  Gbem_1660  response regulator receiver protein  32.46 
 
 
126 aa  72.4  0.000000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1694  two component, sigma54 specific, transcriptional regulator, Fis family  33.93 
 
 
472 aa  72.4  0.000000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2807  two component, sigma54 specific, Fis family transcriptional regulator  33.64 
 
 
466 aa  72.8  0.000000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.75933  n/a   
 
 
-
 
NC_009667  Oant_2210  two component, sigma54 specific, Fis family transcriptional regulator  36.36 
 
 
453 aa  72  0.000000000003  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU2506  sensory box protein/sigma-54 dependent DNA-binding response regulator  35.85 
 
 
564 aa  72  0.000000000003  Geobacter sulfurreducens PCA  Bacteria  normal  0.92979  n/a   
 
 
-
 
NC_007498  Pcar_2017  response regulator CheY  35.51 
 
 
129 aa  71.6  0.000000000003  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_4779  two component, sigma54 specific, transcriptional regulator, Fis family  34.21 
 
 
494 aa  71.6  0.000000000003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0427  two component, sigma54 specific, Fis family transcriptional regulator  29.31 
 
 
458 aa  71.6  0.000000000003  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1510  two component, sigma54 specific, Fis family transcriptional regulator  35.96 
 
 
448 aa  72  0.000000000003  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2001  two component, sigma54 specific, Fis family transcriptional regulator  34.19 
 
 
454 aa  72  0.000000000003  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2786  two component, sigma54 specific, transcriptional regulator, Fis family  33.33 
 
 
480 aa  72  0.000000000003  Geobacter lovleyi SZ  Bacteria  normal  0.543097  n/a   
 
 
-
 
NC_012918  GM21_1525  response regulator receiver modulated diguanylate cyclase  34.82 
 
 
316 aa  71.6  0.000000000003  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.15223e-23 
 
 
-
 
NC_013440  Hoch_5543  two component transcriptional regulator, Fis family  32.43 
 
 
180 aa  71.2  0.000000000004  Haliangium ochraceum DSM 14365  Bacteria  normal  0.657887  normal 
 
 
-
 
NC_013525  Tter_1016  two component transcriptional regulator, winged helix family  35.96 
 
 
243 aa  71.2  0.000000000004  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009483  Gura_2934  response regulator receiver protein  32.46 
 
 
129 aa  71.2  0.000000000004  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000852899  n/a   
 
 
-
 
NC_011146  Gbem_3097  diguanylate cyclase  36.73 
 
 
458 aa  71.2  0.000000000005  Geobacter bemidjiensis Bem  Bacteria  normal  0.948135  n/a   
 
 
-
 
NC_013501  Rmar_1797  two component, sigma54 specific, transcriptional regulator, Fis family  37.96 
 
 
461 aa  71.2  0.000000000005  Rhodothermus marinus DSM 4252  Bacteria  normal  0.774224  n/a   
 
 
-
 
NC_010571  Oter_2405  response regulator receiver sensor signal transduction histidine kinase  45.95 
 
 
383 aa  70.9  0.000000000005  Opitutus terrae PB90-1  Bacteria  normal  0.109691  normal 
 
 
-
 
NC_009831  Ssed_4069  two component Fis family transcriptional regulator  35.85 
 
 
200 aa  70.9  0.000000000005  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_3334  response regulator receiver protein  32.76 
 
 
120 aa  71.2  0.000000000005  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2232  two component, sigma54 specific, transcriptional regulator, Fis family  37.07 
 
 
509 aa  70.9  0.000000000006  Geobacter sp. M21  Bacteria  n/a    normal  0.0243568 
 
 
-
 
NC_013515  Smon_1490  two component transcriptional regulator, winged helix family  37.74 
 
 
225 aa  70.9  0.000000000006  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_007498  Pcar_0259  two component signal transduction response regulator  33.01 
 
 
513 aa  70.5  0.000000000007  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_0553  two component Fis family transcriptional regulator  32.43 
 
 
179 aa  70.5  0.000000000007  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2715  response regulator receiver modulated diguanylate cyclase  33.93 
 
 
314 aa  70.5  0.000000000007  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0671  two component, sigma54 specific, transcriptional regulator, Fis family  38.94 
 
 
469 aa  70.5  0.000000000007  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1165  diguanylate cyclase  35.71 
 
 
459 aa  70.5  0.000000000008  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000192138 
 
 
-
 
NC_009253  Dred_1501  two component, sigma54 specific, Fis family transcriptional regulator  34.65 
 
 
482 aa  70.5  0.000000000008  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1994  two component signal transduction response regulator  34.26 
 
 
477 aa  70.1  0.000000000009  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3647  two component, sigma-54 specific, Fis family transcriptional regulator  37.93 
 
 
471 aa  70.1  0.00000000001  Geobacter uraniireducens Rf4  Bacteria  normal  0.0209004  n/a   
 
 
-
 
NC_013173  Dbac_2984  two component, sigma54 specific, transcriptional regulator, Fis family  32.08 
 
 
458 aa  69.7  0.00000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.826768  n/a   
 
 
-
 
NC_010814  Glov_3603  response regulator receiver protein  34.91 
 
 
131 aa  69.7  0.00000000001  Geobacter lovleyi SZ  Bacteria  normal  0.656399  n/a   
 
 
-
 
NC_011769  DvMF_1991  response regulator receiver protein  33.64 
 
 
153 aa  69.3  0.00000000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013223  Dret_0077  two component, sigma54 specific, transcriptional regulator, Fis family  33.02 
 
 
457 aa  69.7  0.00000000001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_1886  diguanylate cyclase  36.04 
 
 
462 aa  69.7  0.00000000001  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
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