85 homologs were found in PanDaTox collection
for query gene Sama_0094 on replicon NC_008700
Organism: Shewanella amazonensis SB2B



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008700  Sama_0094  isoprenoid biosynthesis protein with amidotransferase-like domain  100 
 
 
217 aa  437  1e-122  Shewanella amazonensis SB2B  Bacteria  hitchhiker  1.08389e-06  normal  0.0160818 
 
 
-
 
NC_008577  Shewana3_4108  isoprenoid biosynthesis protein with amidotransferase-like domain  76.5 
 
 
218 aa  342  4e-93  Shewanella sp. ANA-3  Bacteria  unclonable  8.07766e-09  normal  0.531371 
 
 
-
 
NC_008321  Shewmr4_3904  isoprenoid biosynthesis protein with amidotransferase-like domain  76.04 
 
 
218 aa  340  9e-93  Shewanella sp. MR-4  Bacteria  hitchhiker  3.8321e-06  normal  0.271262 
 
 
-
 
NC_008322  Shewmr7_3996  isoprenoid biosynthesis protein with amidotransferase-like domain  76.04 
 
 
218 aa  340  1e-92  Shewanella sp. MR-7  Bacteria  decreased coverage  1.48784e-05  normal  0.0198242 
 
 
-
 
NC_004347  SO_4670  isoprenoid biosynthesis protein with amidotransferase-like domain  76.39 
 
 
218 aa  336  1e-91  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_3905  isoprenoid biosynthesis protein with amidotransferase-like domain  76.85 
 
 
218 aa  335  2e-91  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  7.99848e-05  n/a   
 
 
-
 
NC_009052  Sbal_0054  isoprenoid biosynthesis protein with amidotransferase-like domain  74.54 
 
 
220 aa  330  7e-90  Shewanella baltica OS155  Bacteria  hitchhiker  1.50521e-08  n/a   
 
 
-
 
NC_009997  Sbal195_4484  isoprenoid biosynthesis protein with amidotransferase-like domain  74.54 
 
 
220 aa  330  9e-90  Shewanella baltica OS195  Bacteria  hitchhiker  8.43993e-05  hitchhiker  0.00766918 
 
 
-
 
NC_011663  Sbal223_4289  isoprenoid biosynthesis protein with amidotransferase-like domain  74.07 
 
 
220 aa  329  2e-89  Shewanella baltica OS223  Bacteria  hitchhiker  6.97877e-06  hitchhiker  9.82153e-08 
 
 
-
 
NC_009665  Shew185_4344  isoprenoid biosynthesis protein with amidotransferase-like domain  74.07 
 
 
220 aa  328  3e-89  Shewanella baltica OS185  Bacteria  hitchhiker  3.64438e-10  n/a   
 
 
-
 
NC_009831  Ssed_0097  isoprenoid biosynthesis protein with amidotransferase-like domain  71.76 
 
 
217 aa  327  1e-88  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  4.59976e-05  hitchhiker  0.000821715 
 
 
-
 
NC_009092  Shew_3713  isoprenoid biosynthesis protein with amidotransferase-like domain  71.43 
 
 
217 aa  325  3e-88  Shewanella loihica PV-4  Bacteria  decreased coverage  3.3375e-07  normal 
 
 
-
 
NC_008345  Sfri_3942  isoprenoid biosynthesis protein with amidotransferase-like domain  69.12 
 
 
217 aa  317  1e-85  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  8.18119e-09  n/a   
 
 
-
 
NC_007954  Sden_3619  isoprenoid biosynthesis protein with amidotransferase-like domain  69.59 
 
 
221 aa  315  3e-85  Shewanella denitrificans OS217  Bacteria  hitchhiker  1.83694e-06  n/a   
 
 
-
 
NC_009901  Spea_0103  isoprenoid biosynthesis protein with amidotransferase-like domain  70.05 
 
 
217 aa  313  2e-84  Shewanella pealeana ATCC 700345  Bacteria  normal  0.362868  n/a   
 
 
-
 
NC_010506  Swoo_0061  isoprenoid biosynthesis protein with amidotransferase-like domain  68.98 
 
 
217 aa  310  8e-84  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.000549643  hitchhiker  3.1605e-07 
 
 
-
 
NC_009656  PSPA7_5990  isoprenoid biosynthesis protein with amidotransferase-like domain  61.4 
 
 
222 aa  259  2e-68  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_0552  isoprenoid biosynthesis protein with amidotransferase-like domain  58.53 
 
 
216 aa  258  7e-68  Vibrio cholerae O395  Bacteria  hitchhiker  1.46909e-08  n/a   
 
 
-
 
NC_012560  Avin_47460  isoprenoid biosynthesis protein with amidotransferase-like domain  58.33 
 
 
217 aa  255  3e-67  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_69260  isoprenoid biosynthesis protein with amidotransferase-like domain  60 
 
 
222 aa  255  4e-67  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_00017  isoprenoid biosynthesis protein with amidotransferase-like domain  56.02 
 
 
217 aa  253  1e-66  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_05413  isoprenoid biosynthesis protein with amidotransferase-like domain  56.68 
 
 
216 aa  253  2e-66  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009512  Pput_5129  isoprenoid biosynthesis protein with amidotransferase-like domain  58.33 
 
 
219 aa  253  2e-66  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_5281  isoprenoid biosynthesis protein with amidotransferase-like domain  57.21 
 
 
219 aa  250  1e-65  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_0296  isoprenoid biosynthesis protein with amidotransferase-like domain  58.33 
 
 
219 aa  248  4e-65  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_5468  isoprenoid biosynthesis protein with amidotransferase-like domain  58.14 
 
 
222 aa  248  4e-65  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0196269  normal  0.0591301 
 
 
-
 
NC_002947  PP_5220  isoprenoid biosynthesis protein with amidotransferase-like domain  57.21 
 
 
221 aa  248  4e-65  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_0290  isoprenoid biosynthesis protein with amidotransferase-like domain  58.33 
 
 
222 aa  247  1e-64  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_001473  sigma cross-reacting protein 27A  54.84 
 
 
216 aa  246  2e-64  Vibrio sp. Ex25  Bacteria  normal  0.799881  n/a   
 
 
-
 
NC_010501  PputW619_5043  isoprenoid biosynthesis protein with amidotransferase-like domain  56.28 
 
 
221 aa  246  3e-64  Pseudomonas putida W619  Bacteria  normal  0.13515  normal 
 
 
-
 
NC_010658  SbBS512_E3561  isoprenoid biosynthesis protein with amidotransferase-like domain  56.22 
 
 
217 aa  243  2e-63  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A3402  isoprenoid biosynthesis protein with amidotransferase-like domain  56.22 
 
 
217 aa  243  2e-63  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_3697  isoprenoid biosynthesis protein with amidotransferase-like domain  56.22 
 
 
217 aa  243  2e-63  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0491  isoprenoid biosynthesis protein with amidotransferase-like domain  56.22 
 
 
217 aa  243  2e-63  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.510032 
 
 
-
 
NC_010159  YpAngola_A1125  isoprenoid biosynthesis protein with amidotransferase-like domain  55.76 
 
 
217 aa  243  2e-63  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_0470  isoprenoid biosynthesis protein with amidotransferase-like domain  55.76 
 
 
217 aa  243  2e-63  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_03025  hypothetical protein  56.22 
 
 
217 aa  243  2e-63  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_03074  isoprenoid biosynthesis protein with amidotransferase-like domain  56.22 
 
 
217 aa  243  2e-63  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0498  ThiJ/PfpI domain protein  56.22 
 
 
217 aa  243  2e-63  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_3505  isoprenoid biosynthesis protein with amidotransferase-like domain  56.22 
 
 
217 aa  242  3e-63  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_5253  enhancing lycopene biosynthesis protein 2  56.94 
 
 
222 aa  242  4e-63  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_4531  isoprenoid biosynthesis protein with amidotransferase-like domain  56.22 
 
 
217 aa  241  4e-63  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_0534  isoprenoid biosynthesis protein with amidotransferase-like domain  55.3 
 
 
217 aa  241  6e-63  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.0305832  n/a   
 
 
-
 
NC_009777  VIBHAR_p08222  isoprenoid biosynthesis protein with amidotransferase-like domain  56.02 
 
 
215 aa  241  8e-63  Vibrio harveyi ATCC BAA-1116  Bacteria  normal  0.110955  n/a   
 
 
-
 
NC_009832  Spro_4341  isoprenoid biosynthesis protein with amidotransferase-like domain  55.09 
 
 
217 aa  240  1e-62  Serratia proteamaculans 568  Bacteria  normal  0.293194  normal  0.124314 
 
 
-
 
NC_012912  Dd1591_3788  isoprenoid biosynthesis protein with amidotransferase-like domain  56.48 
 
 
217 aa  238  4e-62  Dickeya zeae Ech1591  Bacteria  decreased coverage  0.000203972  n/a   
 
 
-
 
NC_011094  SeSA_A3519  isoprenoid biosynthesis protein with amidotransferase-like domain  55.76 
 
 
217 aa  238  6e-62  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A3588  isoprenoid biosynthesis protein with amidotransferase-like domain  55.76 
 
 
217 aa  237  9e-62  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A3686  isoprenoid biosynthesis protein with amidotransferase-like domain  55.76 
 
 
217 aa  237  9e-62  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.100268  normal 
 
 
-
 
NC_011083  SeHA_C3624  isoprenoid biosynthesis protein with amidotransferase-like domain  55.76 
 
 
217 aa  237  9e-62  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.56206 
 
 
-
 
NC_011149  SeAg_B3517  isoprenoid biosynthesis protein with amidotransferase-like domain  55.76 
 
 
217 aa  237  9e-62  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0302  isoprenoid biosynthesis protein with amidotransferase-like domain  55.09 
 
 
217 aa  237  1e-61  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0305072  n/a   
 
 
-
 
NC_013421  Pecwa_0308  isoprenoid biosynthesis protein with amidotransferase-like domain  53.7 
 
 
218 aa  234  7e-61  Pectobacterium wasabiae WPP163  Bacteria  normal  0.30662  n/a   
 
 
-
 
NC_007498  Pcar_2945  isoprenoid biosynthesis protein with amidotransferase-like domain  53 
 
 
218 aa  233  2e-60  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3644  isoprenoid biosynthesis protein with amidotransferase-like domain  55.56 
 
 
217 aa  231  5e-60  Enterobacter sp. 638  Bacteria  normal  0.0571035  normal  0.2689 
 
 
-
 
NC_003910  CPS_4610  isoprenoid biosynthesis protein with amidotransferase-like domain  55.76 
 
 
218 aa  228  4e-59  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_0525  isoprenoid biosynthesis protein with amidotransferase-like domain  55.05 
 
 
218 aa  228  8e-59  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_3630  isoprenoid biosynthesis protein with amidotransferase-like domain  54.63 
 
 
217 aa  225  3e-58  Dickeya dadantii Ech703  Bacteria  normal  0.373822  n/a   
 
 
-
 
NC_008639  Cpha266_0520  isoprenoid biosynthesis protein with amidotransferase-like domain  52.53 
 
 
218 aa  225  4e-58  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0481  isoprenoid biosynthesis protein with amidotransferase-like domain  53.67 
 
 
218 aa  216  2e-55  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_0459  isoprenoid biosynthesis protein with amidotransferase-like domain  49.77 
 
 
218 aa  213  2e-54  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I1624  isoprenoid biosynthesis protein with amidotransferase-like domain  48.84 
 
 
216 aa  211  7e-54  Aliivibrio salmonicida LFI1238  Bacteria  decreased coverage  0.000261607  n/a   
 
 
-
 
NC_011145  AnaeK_2160  isoprenoid biosynthesis protein with amidotransferase-like domain  51.38 
 
 
221 aa  211  8e-54  Anaeromyxobacter sp. K  Bacteria  normal  0.0554147  n/a   
 
 
-
 
NC_011891  A2cp1_2250  isoprenoid biosynthesis protein with amidotransferase-like domain  51.38 
 
 
221 aa  210  1e-53  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0491464  n/a   
 
 
-
 
NC_007517  Gmet_3523  isoprenoid biosynthesis protein with amidotransferase-like domain  54.34 
 
 
217 aa  211  1e-53  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0074  isoprenoid biosynthesis protein with amidotransferase-like domain  51.6 
 
 
217 aa  209  2e-53  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1695  isoprenoid biosynthesis protein with amidotransferase-like domain  50 
 
 
221 aa  208  5e-53  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.996152  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0499  isoprenoid biosynthesis protein with amidotransferase-like domain  51.87 
 
 
218 aa  207  9e-53  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3959  isoprenoid biosynthesis protein with amidotransferase-like domain  53.49 
 
 
218 aa  206  2e-52  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  5.36533e-08  n/a   
 
 
-
 
NC_010814  Glov_0486  isoprenoid biosynthesis protein with amidotransferase-like domain  51.6 
 
 
217 aa  205  4e-52  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000554419  n/a   
 
 
-
 
NC_007643  Rru_A3231  isoprenoid biosynthesis protein with amidotransferase-like domain  50 
 
 
227 aa  204  6e-52  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.46619  n/a   
 
 
-
 
NC_009675  Anae109_2110  isoprenoid biosynthesis protein with amidotransferase-like domain  50.69 
 
 
221 aa  202  2e-51  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.401309  normal  0.0642029 
 
 
-
 
NC_008576  Mmc1_3487  isoprenoid biosynthesis protein with amidotransferase-like domain  48.85 
 
 
218 aa  203  2e-51  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_007514  Cag_0167  isoprenoid biosynthesis protein with amidotransferase-like domain  50.23 
 
 
225 aa  202  3e-51  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0550  isoprenoid biosynthesis protein with amidotransferase-like domain  50.92 
 
 
218 aa  200  1e-50  Geobacter bemidjiensis Bem  Bacteria  unclonable  5.5429e-09  n/a   
 
 
-
 
NC_012918  GM21_0562  isoprenoid biosynthesis protein with amidotransferase-like domain  50.92 
 
 
218 aa  199  4e-50  Geobacter sp. M21  Bacteria  n/a    decreased coverage  5.37092e-33 
 
 
-
 
NC_008609  Ppro_3200  isoprenoid biosynthesis protein with amidotransferase-like domain  48.17 
 
 
218 aa  197  9e-50  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2861  isoprenoid biosynthesis protein with amidotransferase-like domain  47.49 
 
 
226 aa  194  6e-49  Rhodoferax ferrireducens T118  Bacteria  normal  0.518579  n/a   
 
 
-
 
NC_007512  Plut_1659  isoprenoid biosynthesis protein with amidotransferase-like domain  47 
 
 
219 aa  191  9e-48  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_007354  Ecaj_0940  isoprenoid biosynthesis protein with amidotransferase-like domain  39.07 
 
 
219 aa  150  2e-35  Ehrlichia canis str. Jake  Bacteria  normal  0.141913  n/a   
 
 
-
 
NC_007799  ECH_0012  isoprenoid biosynthesis protein with amidotransferase-like domain  40 
 
 
221 aa  149  3e-35  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  0.0240754  n/a   
 
 
-
 
NC_002978  WD1271  isoprenoid biosynthesis protein with amidotransferase-like domain  38.81 
 
 
241 aa  148  6e-35  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1174  ThiJ/PfpI domain protein  27.27 
 
 
227 aa  47  0.0002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.64094  n/a   
 
 
-
 
NC_013131  Caci_6630  intracellular protease, PfpI family  38.89 
 
 
184 aa  42.4  0.005  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0685678 
 
 
-
 
NC_012858  Rleg_6825  ThiJ/PfpI domain protein  32.14 
 
 
233 aa  42  0.006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.397498 
 
 
-
 
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