| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3905 |
|---|
| Symbol | |
|---|
| ID | 5081335 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 4530238 |
|---|
| End bp | 4530894 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640501117 |
|---|
| Product | isoprenoid biosynthesis protein with amidotransferase-like domain |
|---|
| Protein accession | YP_001185410 |
|---|
| Protein GI | 146294986 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3155] Uncharacterized protein involved in an early stage of isoprenoid biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0000799848 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA TCGCAGTGTT ACTCAGCGGG TGTGGTGTTT TCGATGGAAC AGAGATCCAT
GAATCGGTTT TAACCCTATT ATCTCTATCG AAAGCTGGCG CACATTATCA ATGTTTTGCT
CCTGATATCA ATCAAATGCA TGTAGTTAAT CACTTATCTG GAGAAGTCGA TGTCACCGAG
ACGCGTAATG TATTGGTGGA ATCGGCACGT ATCGCCCGTG GGGAAATAAA GTCAACCACT
GAGCTAGAGA TTGCAGCATT TGACGCATTA ATTATTCCTG GCGGTTTTGG CGCGGCTAAA
AACCTATGTA ATTTTGCGAC TAATGGTAGT GAGTGTGAAG TGGAGCCACT GGTGGCCGAT
TTTATCAATG AGTTCATTCT GGCGAAAAAG CCCGTTGGTT TTATCTGTAT TGCCCCTATG
ATGATCCCGC GTTTATATCC CCATGGCGTA AAAGGCACGA TCGGTAATGA TAGCGAGACT
GTCGCAGCGT TTAATTTGAT GGGCGGTGAG CATCATATCG CAACAGTGCA TGAGATAGTC
GTGGATGAAG CGAATCGGAT TGTTAGCACA CCCGCTTATA TGTTGGCAGG CAGTATTGCT
GAAGCGCACT CAGGCATCGA GAAGCTGGTT GCCAAGGTGC TGGAGATGAC TGACTAG
|
|---|
| Protein sequence | MKKIAVLLSG CGVFDGTEIH ESVLTLLSLS KAGAHYQCFA PDINQMHVVN HLSGEVDVTE
TRNVLVESAR IARGEIKSTT ELEIAAFDAL IIPGGFGAAK NLCNFATNGS ECEVEPLVAD
FINEFILAKK PVGFICIAPM MIPRLYPHGV KGTIGNDSET VAAFNLMGGE HHIATVHEIV
VDEANRIVST PAYMLAGSIA EAHSGIEKLV AKVLEMTD
|
|---|
| |