| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0097 |
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| Symbol | |
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| ID | 5613081 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 109761 |
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| End bp | 110414 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640930923 |
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| Product | isoprenoid biosynthesis protein with amidotransferase-like domain |
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| Protein accession | YP_001471838 |
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| Protein GI | 157373238 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3155] Uncharacterized protein involved in an early stage of isoprenoid biosynthesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000459976 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000821715 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAAAAAAA TAGCAGTCTT ATTGAGTGGT GCAGGTGTAT TCGATGGTTC AGAGATCCAT
GAGGCTGTGT TAACTATGCT GGCACTCACT AAACTCGGTG CTAGTTATCA ATGTTTTGCT
CCTGACATTG AGCAGATGCA TGTCGTCAAT CATCTGACCG GAGAAGTTTC TGCTGAAGAG
AGTCGAAATG TTCTGGTGGA GTCGGCAAGG ATTGCGAGGG GCGAGATCAT GGCTACCGAT
CGACTCGATA TAGAAGCATT CGATGCACTG GTTATCCCCG GTGGTTTTGG TGCGGCAAAG
AATCTGTGCA ACTTTGCAAC TAATGGCAGT GACTGTGAGA TCTCTCTCGA GGTTTCCGAT
TTTATCTCCG AATTTGCCGA TGCGAAAAAG CCTGTCGGCT TTATCTGTAT CGCCCCAATC
ATGATCCCAC TGCTTTATGG AGAAGGAGTG ACGGGGACGA TTGGCAACGA TGTTGATACG
GCTCAGGCAT TTAACCTGAT GGGAGGCCAT CATCAAGAAG CCGTTGTACA AGACATTATC
GTGGACGAAG CCAATAAGGT TGTGAGTACT CCCGCGTATA TGTTGGCCGG AAATATTGCC
GAAGCTAATG AAGGTATCGA GAAGCTGGTA AAGAAAGTAC TGGAGATGGT TTAG
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| Protein sequence | MKKIAVLLSG AGVFDGSEIH EAVLTMLALT KLGASYQCFA PDIEQMHVVN HLTGEVSAEE
SRNVLVESAR IARGEIMATD RLDIEAFDAL VIPGGFGAAK NLCNFATNGS DCEISLEVSD
FISEFADAKK PVGFICIAPI MIPLLYGEGV TGTIGNDVDT AQAFNLMGGH HQEAVVQDII
VDEANKVVST PAYMLAGNIA EANEGIEKLV KKVLEMV
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