| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_4344 |
|---|
| Symbol | |
|---|
| ID | 5369692 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 5179405 |
|---|
| End bp | 5180067 |
|---|
| Gene Length | 663 bp |
|---|
| Protein Length | 220 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640832607 |
|---|
| Product | isoprenoid biosynthesis protein with amidotransferase-like domain |
|---|
| Protein accession | YP_001368521 |
|---|
| Protein GI | 153002840 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3155] Uncharacterized protein involved in an early stage of isoprenoid biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000000364438 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAG TCGCAGTGTT ACTGAGTGGA TGCGGTGTTT TCGATGGAAC AGAGATCCAT
GAATCGGTTT TAACGCTTTT ATGCTTATCC AAAGCGGGGG TTCACTACCA ATGTTTTGCG
CCTGATATCA AACAGATGCA TGTGGTAGAT CATCTCACTG GTGAGGTCGA TGCGACAGCA
AGTCGTAATG TGCTGGTGGA GTCGGCGCGC ATTGCCCGTG GCGAAGTTAA AGCGACCACA
GAATTAGCTA TCGCCGAATT TGATGCCTTG ATCATTCCCG GTGGTTTTGG TGCGGCGAAA
AATCTGTGTA ATTTTGCGAC GAACGGCAGC GAGTGTGAAG TAGATCCGCT GGTGACTGAT
TTTATCAATG AGTTCATTCT GGCGAAAAAG CCCGTTGGCT TTATCTGTAT CGCACCTATG
ATGATCCCGC GTTTATATCC CCATGGCGTA AAAGGCACTA TTGGTAATGA TAGCGATACT
GTTGCGGCGT TCAATTTGAT GGGTGGAGAG CATCAAGTCG CGACTGTGCA TGAGATCGTC
GTAGATGAAG CGAATCGAAT TGTCAGCACT CCCGCTTATA TGTTGGCTGG AAGTATTGCT
GAAGCGCATT CAGGCATCGA GAAGCTGGTT GCTAAGGTAC TGGAGATGAC TGACGCGCGT
TAG
|
|---|
| Protein sequence | MKKVAVLLSG CGVFDGTEIH ESVLTLLCLS KAGVHYQCFA PDIKQMHVVD HLTGEVDATA
SRNVLVESAR IARGEVKATT ELAIAEFDAL IIPGGFGAAK NLCNFATNGS ECEVDPLVTD
FINEFILAKK PVGFICIAPM MIPRLYPHGV KGTIGNDSDT VAAFNLMGGE HQVATVHEIV
VDEANRIVST PAYMLAGSIA EAHSGIEKLV AKVLEMTDAR
|
|---|
| |