| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3713 |
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| Symbol | |
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| ID | 4921070 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4417346 |
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| End bp | 4417999 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640165335 |
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| Product | isoprenoid biosynthesis protein with amidotransferase-like domain |
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| Protein accession | YP_001095838 |
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| Protein GI | 127514641 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3155] Uncharacterized protein involved in an early stage of isoprenoid biosynthesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000033375 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAAAAT TTGCTGTTTT ATTAAGCGGC GCGGGAGTGT TCGACGGCAG CGAACTTCAT
GAGGCGGTAT TGACTCTGCT GTCGCTGACC CAGGCCGGAG TAAGTTATCA ATGTTTTGCA
CCCAACATAG AGCAGATGCA CGTGGTGAAT CACCTCACAG GTGAGGTGGC CGTGGGTGAG
CATCGCAACG TGCTGGTGGA GTCGGCGCGT ATTGCCCGTG GCGACATCAA GGCAACGGAC
GAGTTAGATA TCCAGGCCTT CGATGGTCTG GTGATCCCAG GTGGCTTTGG CGCCGCGAAG
AATCTGTGTA ATTTTGCCGT GGTGGGCAGC GAGTGTGAGG TGGCACCTAG CGTGAAGGCC
TTCATCAGCG AGTTTGTCGA GGCGAATAAG CCGGTGGGCT TTATCTGTAT CTCGCCCGTG
ATGATCCCTA AGCTCTATGG CGAGAAGGCC AAGGGCACCA TAGGCCATGA CAGCGACACG
GCCCATGCCT TTAACCTGAT GGGCGGAGAA CATGTGGAGG CCAATGTCGA GCAGATCGTC
GTCGATGAGG CGCGTAAACT GGTGAGTACG CCGGCTTATA TGTTGGCCGA GAATATTGCC
CAGGCCCATA TCGGCATAGA TAAGCTGGTG AAGAAGGTGA TTGAGCTGGC GTGA
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| Protein sequence | MKKFAVLLSG AGVFDGSELH EAVLTLLSLT QAGVSYQCFA PNIEQMHVVN HLTGEVAVGE
HRNVLVESAR IARGDIKATD ELDIQAFDGL VIPGGFGAAK NLCNFAVVGS ECEVAPSVKA
FISEFVEANK PVGFICISPV MIPKLYGEKA KGTIGHDSDT AHAFNLMGGE HVEANVEQIV
VDEARKLVST PAYMLAENIA QAHIGIDKLV KKVIELA
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