| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_5129 |
|---|
| Symbol | |
|---|
| ID | 5191973 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 5764151 |
|---|
| End bp | 5764810 |
|---|
| Gene Length | 660 bp |
|---|
| Protein Length | 219 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640589612 |
|---|
| Product | isoprenoid biosynthesis protein with amidotransferase-like domain |
|---|
| Protein accession | YP_001270431 |
|---|
| Protein GI | 148550329 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3155] Uncharacterized protein involved in an early stage of isoprenoid biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAAAA AAGTAGCGGT GATTCTTTCC GGCTGTGGCG TGTATGACGG CGCCGAAATC
CACGAAAGCG TGATCACGCT GCTGCGCCTC GACCAGCGCG GTGCGCAGGT GCAGTGCTTC
GCGCCGAACA TCGCACAGAT GCATGTAATC AACCATCTGA CCGGCGAAGA AATGCCCGAA
TCGCGCAATG TGCTGGTGGA GTCGGCGCGC ATCGCTCGCG GCGAGGTCAA GGATATCCGT
GAGGCCAAGG CCGCAGACTT CGATGCGCTG ATCGTGCCGG GCGGTTTCGG GGCAGCAAAA
AACCTCTCCA ACTTTGCCGT GGAAGGCGCC AACTGCAGCG TGAACCCAGA CGTGCTGGCC
TTGGCCGAAG CCTTTGCCGA CGCCTGCAAA CCCGTTGGCC TGATCTGCAT CTCGCCGGCG
CTGGCGGCGA AGATCTATGG GCCGGGCGTT GTCTGCACCA TCGGGAGCGA TGCCGGCACT
GCGGCGGCTG TCGAAAAGAT GGGTGGCACC CATGAAGAAT GCGATGTACA CGACATTGTC
GAAGACACCC AGCGCAAGCT CGTGACGACC CCGGCGTACA TGGAGGCCAA GTCGATCAGC
GAGGCGGCGG GCGGGATCTA CAAGCTGGTG GACCGAGTGC TGGAGCTGGC GCACGAGTAA
|
|---|
| Protein sequence | MTKKVAVILS GCGVYDGAEI HESVITLLRL DQRGAQVQCF APNIAQMHVI NHLTGEEMPE
SRNVLVESAR IARGEVKDIR EAKAADFDAL IVPGGFGAAK NLSNFAVEGA NCSVNPDVLA
LAEAFADACK PVGLICISPA LAAKIYGPGV VCTIGSDAGT AAAVEKMGGT HEECDVHDIV
EDTQRKLVTT PAYMEAKSIS EAAGGIYKLV DRVLELAHE
|
|---|
| |