More than 300 homologs were found in PanDaTox collection
for query gene RPD_3604 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007778  RPB_1688  Acyl-CoA dehydrogenase-like  79.95 
 
 
415 aa  699    Rhodopseudomonas palustris HaA2  Bacteria  normal  0.78575  normal  0.535517 
 
 
-
 
NC_007778  RPB_1689  Acyl-CoA dehydrogenase-like  93 
 
 
415 aa  800    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.777163 
 
 
-
 
NC_009485  BBta_7116  putative acyl-CoA dehydrogenase  84.78 
 
 
415 aa  729    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_2198  acyl-CoA dehydrogenase-like  76.33 
 
 
413 aa  667    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.659729  normal 
 
 
-
 
NC_007958  RPD_3604  acyl-CoA dehydrogenase-like  100 
 
 
414 aa  847    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0502899  normal 
 
 
-
 
NC_007958  RPD_3605  acyl-CoA dehydrogenase-like  78.26 
 
 
415 aa  692    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.75816  normal 
 
 
-
 
NC_011004  Rpal_1910  acyl-CoA dehydrogenase domain protein  94.69 
 
 
414 aa  811    Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_7117  putative acyl-CoA dehydrogenase  77.78 
 
 
414 aa  677    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.691802 
 
 
-
 
NC_011004  Rpal_1909  acyl-CoA dehydrogenase domain protein  79.47 
 
 
415 aa  695    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.337795  n/a   
 
 
-
 
NC_009511  Swit_1604  acyl-CoA dehydrogenase domain-containing protein  61.02 
 
 
432 aa  543  1e-153  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_3426  acyl-CoA dehydrogenase domain-containing protein  54.74 
 
 
407 aa  464  1e-129  Caulobacter sp. K31  Bacteria  normal  0.751929  normal  0.216447 
 
 
-
 
NC_009719  Plav_0965  acyl-CoA dehydrogenase domain-containing protein  54.27 
 
 
409 aa  456  1e-127  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_1032  acyl-CoA dehydrogenase domain-containing protein  50.12 
 
 
411 aa  409  1e-113  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.605452  normal 
 
 
-
 
NC_009511  Swit_3397  acyl-CoA dehydrogenase domain-containing protein  46.57 
 
 
403 aa  355  5.999999999999999e-97  Sphingomonas wittichii RW1  Bacteria  hitchhiker  0.00717177  decreased coverage  0.00584794 
 
 
-
 
NC_008048  Sala_1632  acyl-CoA dehydrogenase-like protein  45.45 
 
 
407 aa  337  2.9999999999999997e-91  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0101171  normal 
 
 
-
 
NC_013739  Cwoe_0736  acyl-CoA dehydrogenase domain protein  42.76 
 
 
403 aa  317  3e-85  Conexibacter woesei DSM 14684  Bacteria  normal  0.453117  normal 
 
 
-
 
NC_008048  Sala_1636  acyl-CoA dehydrogenase-like protein  43.93 
 
 
401 aa  312  5.999999999999999e-84  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.552524 
 
 
-
 
NC_008048  Sala_1246  acyl-CoA dehydrogenase-like protein  46.09 
 
 
384 aa  298  1e-79  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.235066  normal 
 
 
-
 
NC_013510  Tcur_3342  acyl-CoA dehydrogenase domain protein  40.85 
 
 
393 aa  287  2e-76  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_5569  acyl-CoA dehydrogenase domain-containing protein  44.23 
 
 
396 aa  286  5e-76  Mycobacterium sp. JLS  Bacteria  normal  0.313382  normal 
 
 
-
 
NC_009338  Mflv_0344  acyl-CoA dehydrogenase domain-containing protein  43.53 
 
 
394 aa  286  5.999999999999999e-76  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_5188  acyl-CoA dehydrogenase-like protein  47.02 
 
 
396 aa  285  1.0000000000000001e-75  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_2813  acyl-CoA dehydrogenase domain-containing protein  39.75 
 
 
380 aa  285  1.0000000000000001e-75  Salinispora tropica CNB-440  Bacteria  normal  0.249465  normal 
 
 
-
 
NC_008705  Mkms_5277  acyl-CoA dehydrogenase domain-containing protein  47.02 
 
 
396 aa  285  1.0000000000000001e-75  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_0960  acyl-CoA dehydrogenase domain protein  41.16 
 
 
378 aa  283  4.0000000000000003e-75  Conexibacter woesei DSM 14684  Bacteria  normal  0.489478  normal 
 
 
-
 
NC_008726  Mvan_0394  acyl-CoA dehydrogenase domain-containing protein  43.48 
 
 
398 aa  281  1e-74  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.254856  normal  0.326104 
 
 
-
 
NC_013595  Sros_6825  dehydrogenase family protein  39.16 
 
 
393 aa  278  1e-73  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.178037 
 
 
-
 
NC_013595  Sros_7781  acyl-CoA dehydrogenase domain-containing protein  43.41 
 
 
395 aa  276  3e-73  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_1155  acyl-CoA dehydrogenase domain protein  47.81 
 
 
396 aa  276  7e-73  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_2698  acyl-CoA dehydrogenase domain-containing protein  43.72 
 
 
390 aa  275  1.0000000000000001e-72  Thermobispora bispora DSM 43833  Bacteria  normal  0.96365  normal  0.79248 
 
 
-
 
NC_013510  Tcur_1475  acyl-CoA dehydrogenase domain protein  46.11 
 
 
397 aa  270  4e-71  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0513972  n/a   
 
 
-
 
NC_008699  Noca_0803  acyl-CoA dehydrogenase domain-containing protein  37.72 
 
 
378 aa  269  8e-71  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_1367  acyl-CoA dehydrogenase domain protein  38.41 
 
 
400 aa  265  1e-69  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_5572  acyl-CoA dehydrogenase domain-containing protein  45.45 
 
 
398 aa  264  2e-69  Frankia sp. EAN1pec  Bacteria  normal  0.98735  normal 
 
 
-
 
NC_013595  Sros_2091  acyl-CoA dehydrogenase domain-containing protein  37.76 
 
 
381 aa  264  2e-69  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_2574  acyl-CoA dehydrogenase domain-containing protein  37.5 
 
 
385 aa  262  8.999999999999999e-69  Mycobacterium sp. JLS  Bacteria  normal  0.762648  normal 
 
 
-
 
NC_007333  Tfu_2309  putative acyl-CoA dehydrogenase  41.6 
 
 
411 aa  261  2e-68  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_4064  acyl-CoA dehydrogenase domain-containing protein  37.97 
 
 
390 aa  260  4e-68  Mycobacterium sp. JLS  Bacteria  normal  normal  0.725849 
 
 
-
 
CP001800  Ssol_0320  acyl-CoA dehydrogenase domain protein  37.09 
 
 
370 aa  258  1e-67  Sulfolobus solfataricus 98/2  Archaea  normal  0.25734  n/a   
 
 
-
 
NC_008699  Noca_4134  acyl-CoA dehydrogenase domain-containing protein  37.95 
 
 
413 aa  256  5e-67  Nocardioides sp. JS614  Bacteria  normal  0.355452  n/a   
 
 
-
 
NC_013947  Snas_2909  acyl-CoA dehydrogenase domain-containing protein  42.95 
 
 
396 aa  254  2.0000000000000002e-66  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.25619  normal  0.0238889 
 
 
-
 
NC_013510  Tcur_2706  acyl-CoA dehydrogenase domain protein  38.23 
 
 
383 aa  253  4.0000000000000004e-66  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0953492  n/a   
 
 
-
 
NC_013159  Svir_16750  acyl-CoA dehydrogenase  41.89 
 
 
403 aa  253  5.000000000000001e-66  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.73205  normal 
 
 
-
 
NC_008048  Sala_0875  acyl-CoA dehydrogenase-like protein  35.96 
 
 
383 aa  251  1e-65  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_1861  acyl-CoA dehydrogenase domain protein  41.1 
 
 
395 aa  250  3e-65  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
CP001800  Ssol_2123  acyl-CoA dehydrogenase domain protein  36.73 
 
 
363 aa  246  6e-64  Sulfolobus solfataricus 98/2  Archaea  unclonable  0.000012052  n/a   
 
 
-
 
NC_009921  Franean1_5603  acyl-CoA dehydrogenase domain-containing protein  34.67 
 
 
462 aa  245  9.999999999999999e-64  Frankia sp. EAN1pec  Bacteria  normal  0.447806  hitchhiker  0.00691492 
 
 
-
 
NC_009077  Mjls_4096  acyl-CoA dehydrogenase domain-containing protein  35.4 
 
 
396 aa  245  9.999999999999999e-64  Mycobacterium sp. JLS  Bacteria  normal  0.0624184  normal 
 
 
-
 
NC_007777  Francci3_0939  acyl-CoA dehydrogenase-like  35.44 
 
 
392 aa  244  1.9999999999999999e-63  Frankia sp. CcI3  Bacteria  normal  0.0130462  normal  0.579337 
 
 
-
 
NC_008699  Noca_2767  acyl-CoA dehydrogenase domain-containing protein  35.48 
 
 
378 aa  244  1.9999999999999999e-63  Nocardioides sp. JS614  Bacteria  normal  0.259881  n/a   
 
 
-
 
NC_013510  Tcur_4613  acyl-CoA dehydrogenase domain protein  36.79 
 
 
394 aa  244  3e-63  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1807  acyl-CoA dehydrogenase domain-containing protein  35.65 
 
 
399 aa  243  3.9999999999999997e-63  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.167167  normal 
 
 
-
 
NC_014158  Tpau_3835  acyl-CoA dehydrogenase domain protein  35.35 
 
 
382 aa  243  5e-63  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2176  acyl-CoA dehydrogenase domain-containing protein  35.78 
 
 
396 aa  243  6e-63  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1805  acyl-CoA dehydrogenase domain-containing protein  35.61 
 
 
397 aa  241  1e-62  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.337752  normal 
 
 
-
 
NC_009921  Franean1_2922  acyl-CoA dehydrogenase domain-containing protein  35.47 
 
 
416 aa  241  2e-62  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_1872  acyl-CoA dehydrogenase domain-containing protein  36.59 
 
 
397 aa  241  2e-62  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.364161 
 
 
-
 
NC_008146  Mmcs_0366  acyl-CoA dehydrogenase-like protein  41.89 
 
 
730 aa  240  2.9999999999999997e-62  Mycobacterium sp. MCS  Bacteria  normal  0.235849  n/a   
 
 
-
 
NC_008705  Mkms_0376  acyl-CoA dehydrogenase domain-containing protein  41.89 
 
 
730 aa  240  2.9999999999999997e-62  Mycobacterium sp. KMS  Bacteria  normal  0.262889  normal 
 
 
-
 
NC_009077  Mjls_0355  acyl-CoA dehydrogenase domain-containing protein  41.89 
 
 
730 aa  240  2.9999999999999997e-62  Mycobacterium sp. JLS  Bacteria  normal  0.353074  normal 
 
 
-
 
NC_009380  Strop_2615  acyl-CoA dehydrogenase domain-containing protein  36.27 
 
 
386 aa  239  6.999999999999999e-62  Salinispora tropica CNB-440  Bacteria  normal  0.766837  normal 
 
 
-
 
NC_009511  Swit_3628  acyl-CoA dehydrogenase domain-containing protein  34.99 
 
 
383 aa  238  2e-61  Sphingomonas wittichii RW1  Bacteria  normal  0.373351  normal  0.221875 
 
 
-
 
NC_009953  Sare_2814  acyl-CoA dehydrogenase domain-containing protein  35.95 
 
 
386 aa  237  2e-61  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00382252 
 
 
-
 
NC_007511  Bcep18194_B1437  Acyl-CoA dehydrogenase  34.08 
 
 
389 aa  236  6e-61  Burkholderia sp. 383  Bacteria  normal  0.0732196  normal 
 
 
-
 
NC_007347  Reut_A1563  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal  35.66 
 
 
388 aa  235  1.0000000000000001e-60  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010333  Caul_5300  acyl-CoA dehydrogenase domain-containing protein  38.79 
 
 
402 aa  235  1.0000000000000001e-60  Caulobacter sp. K31  Bacteria  normal  normal  0.712748 
 
 
-
 
NC_009077  Mjls_4137  acyl-CoA dehydrogenase domain-containing protein  38.36 
 
 
381 aa  234  2.0000000000000002e-60  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_0403  acyl-CoA dehydrogenase domain-containing protein  40.71 
 
 
737 aa  234  2.0000000000000002e-60  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0496  acyl-CoA dehydrogenase domain-containing protein  34.4 
 
 
400 aa  234  3e-60  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.954912  normal 
 
 
-
 
NC_013510  Tcur_3998  acyl-CoA dehydrogenase domain protein  36.75 
 
 
734 aa  233  4.0000000000000004e-60  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0183743  n/a   
 
 
-
 
NC_009338  Mflv_0335  acyl-CoA dehydrogenase domain-containing protein  39.22 
 
 
728 aa  233  5e-60  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_3633  acyl-CoA dehydrogenase domain-containing protein  36.48 
 
 
393 aa  233  7.000000000000001e-60  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.752817 
 
 
-
 
NC_008726  Mvan_5287  acyl-CoA dehydrogenase domain-containing protein  35.86 
 
 
374 aa  232  7.000000000000001e-60  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.66157  normal  0.272331 
 
 
-
 
NC_008726  Mvan_4006  acyl-CoA dehydrogenase domain-containing protein  34.2 
 
 
419 aa  233  7.000000000000001e-60  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I1078  acyl-CoA dehydrogenase domain-containing protein  34.88 
 
 
398 aa  232  1e-59  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_10275  acyl-CoA dehydrogenase fadE6  40.94 
 
 
731 aa  232  1e-59  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0482205 
 
 
-
 
NC_007951  Bxe_A3192  putative pimeloyl-CoA dehydrogenase (large subunit), PimC-like  34.96 
 
 
398 aa  231  2e-59  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_4581  acyl-CoA dehydrogenase domain-containing protein  34.31 
 
 
394 aa  231  2e-59  Frankia sp. EAN1pec  Bacteria  normal  normal  0.676846 
 
 
-
 
NC_009338  Mflv_1481  acyl-CoA dehydrogenase domain-containing protein  35.95 
 
 
382 aa  231  2e-59  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3589  acyl-CoA dehydrogenase domain-containing protein  35.16 
 
 
404 aa  231  2e-59  Frankia sp. EAN1pec  Bacteria  normal  normal  0.646816 
 
 
-
 
NC_007778  RPB_1749  Acyl-CoA dehydrogenase-like  34.73 
 
 
396 aa  230  3e-59  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0172136 
 
 
-
 
NC_009921  Franean1_1625  acyl-CoA dehydrogenase domain-containing protein  35.49 
 
 
422 aa  230  3e-59  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_2719  acyl-CoA dehydrogenase domain-containing protein  32.71 
 
 
429 aa  231  3e-59  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0499  acyl-CoA dehydrogenase domain-containing protein  36.14 
 
 
452 aa  230  3e-59  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.504662  normal 
 
 
-
 
NC_011894  Mnod_5441  pimeloyl-CoA dehydrogenase, large subunit  33.25 
 
 
402 aa  230  4e-59  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.504048  n/a   
 
 
-
 
NC_012856  Rpic12D_1874  acyl-CoA dehydrogenase domain protein  33.33 
 
 
398 aa  229  7e-59  Ralstonia pickettii 12D  Bacteria  normal  normal  0.400233 
 
 
-
 
NC_013159  Svir_17890  acyl-CoA dehydrogenase  37.75 
 
 
402 aa  229  9e-59  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0953451  normal  0.548212 
 
 
-
 
NC_008146  Mmcs_4695  acyl-CoA dehydrogenase-like protein  35.26 
 
 
389 aa  229  9e-59  Mycobacterium sp. MCS  Bacteria  normal  0.0252616  n/a   
 
 
-
 
NC_008705  Mkms_4781  acyl-CoA dehydrogenase domain-containing protein  35.26 
 
 
389 aa  229  9e-59  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_2197  acyl-CoA dehydrogenase domain protein  33.09 
 
 
398 aa  228  1e-58  Ralstonia pickettii 12J  Bacteria  normal  normal  0.34264 
 
 
-
 
NC_009719  Plav_1060  acyl-CoA dehydrogenase domain-containing protein  34.24 
 
 
397 aa  228  1e-58  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.596056  normal 
 
 
-
 
NC_011004  Rpal_4235  pimeloyl-CoA dehydrogenase, large subunit  34.24 
 
 
396 aa  228  1e-58  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_13593  acyl-CoA dehydrogenase fadE30  34.34 
 
 
385 aa  228  1e-58  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.000404245  normal  0.123125 
 
 
-
 
NC_008048  Sala_1104  acyl-CoA dehydrogenase-like protein  32.27 
 
 
397 aa  229  1e-58  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.289526  normal 
 
 
-
 
NC_013441  Gbro_3995  acyl-CoA dehydrogenase domain protein  34.47 
 
 
419 aa  228  2e-58  Gordonia bronchialis DSM 43247  Bacteria  normal  0.30356  n/a   
 
 
-
 
NC_010511  M446_0233  pimeloyl-CoA dehydrogenase, large subunit  33.17 
 
 
400 aa  227  3e-58  Methylobacterium sp. 4-46  Bacteria  normal  0.172287  normal  0.0105147 
 
 
-
 
NC_009074  BURPS668_1307  acyl-CoA dehydrogenase  33.41 
 
 
398 aa  227  3e-58  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009427  Saro_3762  acyl-CoA dehydrogenase domain-containing protein  34.18 
 
 
392 aa  227  3e-58  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.315428  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1147  acyl-CoA dehydrogenase  33.41 
 
 
398 aa  226  4e-58  Burkholderia mallei SAVP1  Bacteria  normal  0.383138  n/a   
 
 
-
 
NC_007434  BURPS1710b_1453  putative acyl-CoA dehydrogenase family protein  33.41 
 
 
398 aa  226  4e-58  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
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