More than 300 homologs were found in PanDaTox collection
for query gene Pnap_0040 on replicon NC_008781
Organism: Polaromonas naphthalenivorans CJ2



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008781  Pnap_0040  binding-protein-dependent transport systems inner membrane component  100 
 
 
259 aa  503  9.999999999999999e-143  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.832577  normal  0.34867 
 
 
-
 
NC_008786  Veis_3788  binding-protein-dependent transport systems inner membrane component  76.45 
 
 
276 aa  388  1e-107  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.374556  normal 
 
 
-
 
NC_007348  Reut_B4887  binding-protein dependent transport system inner membrane protein  78.21 
 
 
296 aa  354  8.999999999999999e-97  Ralstonia eutropha JMP134  Bacteria  normal  0.0123695  n/a   
 
 
-
 
NC_007947  Mfla_2559  binding-protein-dependent transport systems inner membrane component  59.46 
 
 
283 aa  301  7.000000000000001e-81  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_0058  binding-protein-dependent transport systems inner membrane component  45.67 
 
 
275 aa  216  4e-55  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007644  Moth_0466  binding-protein dependent transport system inner membrane protein  51.78 
 
 
262 aa  206  4e-52  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_3255  binding-protein-dependent transport systems inner membrane component  46.31 
 
 
294 aa  206  4e-52  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.106321 
 
 
-
 
NC_013223  Dret_1646  binding-protein-dependent transport systems inner membrane component  51.6 
 
 
259 aa  205  5e-52  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4930  binding-protein dependent transport system inner membrane protein  48.03 
 
 
267 aa  204  1e-51  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5005  binding-protein-dependent transport systems inner membrane component  40.64 
 
 
267 aa  201  8e-51  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007516  Syncc9605_1078  ABC transporter, nitrate-like  44.13 
 
 
275 aa  197  2.0000000000000003e-49  Synechococcus sp. CC9605  Bacteria  normal  0.193306  normal 
 
 
-
 
NC_007347  Reut_A2719  binding-protein dependent transport system inner membrane protein  42.98 
 
 
284 aa  194  9e-49  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2858  binding-protein-dependent transport systems inner membrane component  41.94 
 
 
291 aa  194  2e-48  Cupriavidus metallidurans CH34  Bacteria  normal  0.582448  normal 
 
 
-
 
NC_010002  Daci_0146  binding-protein-dependent transport systems inner membrane component  41.67 
 
 
296 aa  189  5e-47  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.159688 
 
 
-
 
NC_008786  Veis_3642  binding-protein-dependent transport systems inner membrane component  39.92 
 
 
275 aa  188  7e-47  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.142025  normal 
 
 
-
 
NC_008752  Aave_2968  binding-protein-dependent transport systems inner membrane component  42.54 
 
 
289 aa  187  2e-46  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0761961  normal 
 
 
-
 
NC_011894  Mnod_0326  binding-protein-dependent transport systems inner membrane component  45.13 
 
 
257 aa  183  2.0000000000000003e-45  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.369486  n/a   
 
 
-
 
NC_010511  M446_2276  binding-protein-dependent transport systems inner membrane component  41.63 
 
 
257 aa  181  1e-44  Methylobacterium sp. 4-46  Bacteria  normal  0.722283  normal  0.0991744 
 
 
-
 
NC_012791  Vapar_0155  binding-protein-dependent transport systems inner membrane component  42.34 
 
 
292 aa  177  1e-43  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1046  binding-protein-dependent transport systems inner membrane component  41.13 
 
 
282 aa  174  9.999999999999999e-43  Polaromonas sp. JS666  Bacteria  normal  0.12004  normal  0.278615 
 
 
-
 
NC_012880  Dd703_2644  binding-protein-dependent transport systems inner membrane component  46.97 
 
 
282 aa  174  9.999999999999999e-43  Dickeya dadantii Ech703  Bacteria  normal  0.285231  n/a   
 
 
-
 
NC_013422  Hneap_0791  binding-protein-dependent transport systems inner membrane component  40.34 
 
 
320 aa  171  7.999999999999999e-42  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0254  binding-protein dependent transport system inner membrane protein  39.23 
 
 
279 aa  168  9e-41  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.57663 
 
 
-
 
NC_009667  Oant_1429  binding-protein-dependent transport systems inner membrane component  40.35 
 
 
257 aa  167  2e-40  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.214609  n/a   
 
 
-
 
NC_009485  BBta_6456  ABC transporter permease  41.37 
 
 
258 aa  166  2.9999999999999998e-40  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.405099  normal 
 
 
-
 
NC_010172  Mext_3729  binding-protein-dependent transport systems inner membrane component  40.97 
 
 
353 aa  166  2.9999999999999998e-40  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.19574 
 
 
-
 
NC_010725  Mpop_3907  binding-protein-dependent transport systems inner membrane component  40.44 
 
 
357 aa  166  4e-40  Methylobacterium populi BJ001  Bacteria  normal  0.0334046  normal  0.137928 
 
 
-
 
NC_002947  PP_0231  binding-protein-dependent transport systems inner membrane component  38.7 
 
 
279 aa  165  6.9999999999999995e-40  Pseudomonas putida KT2440  Bacteria  normal  0.33405  hitchhiker  0.000710194 
 
 
-
 
NC_007650  BTH_II0802  taurine ABC transporter, permease protein  38.63 
 
 
283 aa  164  9e-40  Burkholderia thailandensis E264  Bacteria  normal  0.207449  n/a   
 
 
-
 
NC_006349  BMAA1580  taurine ABC transporter, permease protein  38.05 
 
 
253 aa  164  1.0000000000000001e-39  Burkholderia mallei ATCC 23344  Bacteria  normal  0.477521  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0620  permease component of taurine ABC transporter  38.05 
 
 
253 aa  164  1.0000000000000001e-39  Burkholderia pseudomallei 1710b  Bacteria  decreased coverage  0.00192231  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2133  taurine ABC transporter, permease protein  38.05 
 
 
283 aa  164  1.0000000000000001e-39  Burkholderia pseudomallei 1106a  Bacteria  normal  0.186654  n/a   
 
 
-
 
NC_008835  BMA10229_2019  taurine ABC transporter, permease protein  38.05 
 
 
285 aa  164  1.0000000000000001e-39  Burkholderia mallei NCTC 10229  Bacteria  normal  0.484134  n/a   
 
 
-
 
NC_009075  BURPS668_A2220  taurine ABC transporter, permease protein  38.05 
 
 
283 aa  164  1.0000000000000001e-39  Burkholderia pseudomallei 668  Bacteria  normal  0.215273  n/a   
 
 
-
 
NC_009079  BMA10247_A0697  taurine ABC transporter, permease protein  38.05 
 
 
283 aa  164  1.0000000000000001e-39  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_5226  binding-protein-dependent transport systems inner membrane component  38.49 
 
 
323 aa  164  1.0000000000000001e-39  Burkholderia phytofirmans PsJN  Bacteria  normal  0.226274  normal 
 
 
-
 
NC_011757  Mchl_4024  binding-protein-dependent transport systems inner membrane component  40.44 
 
 
353 aa  163  2.0000000000000002e-39  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1386  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  38.53 
 
 
323 aa  162  4.0000000000000004e-39  Burkholderia xenovorans LB400  Bacteria  normal  0.173943  normal  0.101646 
 
 
-
 
NC_007947  Mfla_1858  binding-protein-dependent transport systems inner membrane component  38.7 
 
 
321 aa  162  5.0000000000000005e-39  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4981  binding-protein-dependent transport systems inner membrane component  39.08 
 
 
279 aa  161  1e-38  Pseudomonas putida W619  Bacteria  normal  normal  0.588836 
 
 
-
 
NC_010512  Bcenmc03_6428  binding-protein-dependent transport systems inner membrane component  38.1 
 
 
324 aa  160  2e-38  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008062  Bcen_5556  binding-protein-dependent transport systems inner membrane component  38.1 
 
 
324 aa  160  2e-38  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0488095  n/a   
 
 
-
 
NC_008544  Bcen2424_5921  binding-protein-dependent transport systems inner membrane component  38.1 
 
 
324 aa  160  2e-38  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_1108  binding-protein-dependent transport systems inner membrane component  39.73 
 
 
255 aa  160  3e-38  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.135552 
 
 
-
 
NC_009512  Pput_0246  binding-protein-dependent transport systems inner membrane component  39.3 
 
 
279 aa  159  4e-38  Pseudomonas putida F1  Bacteria  normal  0.0570948  normal  0.0921514 
 
 
-
 
NC_010322  PputGB1_0255  binding-protein-dependent transport systems inner membrane component  39.5 
 
 
279 aa  159  5e-38  Pseudomonas putida GB-1  Bacteria  normal  0.796344  normal 
 
 
-
 
NC_010172  Mext_1261  binding-protein-dependent transport systems inner membrane component  37.07 
 
 
273 aa  155  9e-37  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.306936 
 
 
-
 
NC_011757  Mchl_1422  binding-protein-dependent transport systems inner membrane component  37.07 
 
 
273 aa  155  9e-37  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_5321  taurine ABC transporter, permease protein  38.14 
 
 
285 aa  154  1e-36  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_4051  binding-protein-dependent transport systems inner membrane component  36.68 
 
 
273 aa  154  2e-36  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.395379 
 
 
-
 
NC_011901  Tgr7_3082  binding-protein-dependent transport systems inner membrane component  41.59 
 
 
319 aa  153  2.9999999999999998e-36  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA1188  taurine ABC transporter, permease protein  37.5 
 
 
250 aa  152  4e-36  Brucella suis 1330  Bacteria  normal  0.0612406  n/a   
 
 
-
 
NC_010625  Bphy_6082  binding-protein-dependent transport systems inner membrane component  41.67 
 
 
296 aa  151  8e-36  Burkholderia phymatum STM815  Bacteria  normal  normal  0.201741 
 
 
-
 
NC_010725  Mpop_1211  binding-protein-dependent transport systems inner membrane component  36.29 
 
 
273 aa  150  1e-35  Methylobacterium populi BJ001  Bacteria  normal  0.132759  normal  0.452833 
 
 
-
 
NC_007520  Tcr_1787  binding-protein dependent transport system inner membrane protein  39.47 
 
 
326 aa  150  2e-35  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_012792  Vapar_5517  binding-protein-dependent transport systems inner membrane component  37.67 
 
 
256 aa  150  2e-35  Variovorax paradoxus S110  Bacteria  normal  0.16627  n/a   
 
 
-
 
NC_010676  Bphyt_4371  binding-protein-dependent transport systems inner membrane component  39.46 
 
 
306 aa  149  4e-35  Burkholderia phytofirmans PsJN  Bacteria  normal  0.17867  normal 
 
 
-
 
NC_008709  Ping_0049  ABC taurine transporter, binding protein inner membrane component  38.36 
 
 
330 aa  149  4e-35  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0656508 
 
 
-
 
NC_011658  BCAH187_A3058  taurine ABC transporter, permease protein  37.67 
 
 
274 aa  149  6e-35  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3505  binding-protein-dependent transport systems inner membrane component  37.35 
 
 
275 aa  148  8e-35  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.197989  n/a   
 
 
-
 
NC_007778  RPB_4060  binding-protein dependent transport system inner membrane protein  35.16 
 
 
256 aa  148  8e-35  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009634  Mevan_0512  binding-protein-dependent transport systems inner membrane component  34.55 
 
 
253 aa  148  8e-35  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_007298  Daro_0080  binding-protein dependent transport system inner membrane protein  36.86 
 
 
318 aa  147  1.0000000000000001e-34  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2152  binding-protein dependent transport system inner membrane protein  37.16 
 
 
271 aa  147  1.0000000000000001e-34  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.529987 
 
 
-
 
NC_009656  PSPA7_1171  taurine ABC transporter permease  38.16 
 
 
272 aa  148  1.0000000000000001e-34  Pseudomonas aeruginosa PA7  Bacteria  normal  0.104716  n/a   
 
 
-
 
NC_009832  Spro_4564  taurine transporter subunit  35.91 
 
 
279 aa  147  2.0000000000000003e-34  Serratia proteamaculans 568  Bacteria  normal  normal  0.746145 
 
 
-
 
NC_012856  Rpic12D_2477  binding-protein-dependent transport systems inner membrane component  38.91 
 
 
289 aa  147  2.0000000000000003e-34  Ralstonia pickettii 12D  Bacteria  normal  0.0948255  normal 
 
 
-
 
NC_009620  Smed_4861  binding-protein-dependent transport systems inner membrane component  36.59 
 
 
275 aa  146  3e-34  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0877464 
 
 
-
 
NC_013595  Sros_3065  binding-protein-dependent transport systems inner membrane component  35.86 
 
 
280 aa  146  3e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.228654 
 
 
-
 
NC_009675  Anae109_3869  binding-protein-dependent transport systems inner membrane component  35.27 
 
 
274 aa  145  4.0000000000000006e-34  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1488  binding-protein dependent transport system inner membrane protein  34.19 
 
 
280 aa  145  6e-34  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.106569  normal  0.790334 
 
 
-
 
NC_003909  BCE_3060  taurine ABC transporter, permease protein  38.64 
 
 
274 aa  144  1e-33  Bacillus cereus ATCC 10987  Bacteria  normal  0.0244271  n/a   
 
 
-
 
NC_007347  Reut_A1470  binding-protein dependent transport system inner membrane protein  38.1 
 
 
301 aa  144  1e-33  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1848  ABC transporter permease  36.25 
 
 
273 aa  144  1e-33  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1957  binding-protein-dependent transport systems inner membrane component  36.25 
 
 
273 aa  144  1e-33  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2883  binding-protein-dependent transport systems inner membrane component  39.13 
 
 
289 aa  144  2e-33  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK2748  sulfonate/taurine ABC transporter permease  38.03 
 
 
274 aa  144  2e-33  Bacillus cereus E33L  Bacteria  normal  0.947189  n/a   
 
 
-
 
NC_007952  Bxe_B0692  ABC taurine transporter, inner membrane subunit  39.01 
 
 
306 aa  144  2e-33  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.00000000618741  normal  0.0440204 
 
 
-
 
NC_012917  PC1_1402  binding-protein-dependent transport systems inner membrane component  35.71 
 
 
257 aa  143  3e-33  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0761  binding-protein-dependent transport systems inner membrane component  36.44 
 
 
412 aa  143  3e-33  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_014150  Bmur_0403  binding-protein-dependent transport systems inner membrane component  32 
 
 
256 aa  142  4e-33  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_0509  binding-protein-dependent transport systems inner membrane component  38.63 
 
 
289 aa  142  6e-33  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.085274 
 
 
-
 
NC_007953  Bxe_C0085  taurine ABC transporter inner membrane protein  38.2 
 
 
283 aa  142  7e-33  Burkholderia xenovorans LB400  Bacteria  normal  0.664827  normal  0.135193 
 
 
-
 
NC_009635  Maeo_0992  binding-protein-dependent transport systems inner membrane component  35.53 
 
 
254 aa  141  8e-33  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_1763  binding-protein-dependent transport systems inner membrane component  41.18 
 
 
282 aa  141  8e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010510  Mrad2831_6162  binding-protein-dependent transport systems inner membrane component  35.8 
 
 
262 aa  141  9.999999999999999e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.577279 
 
 
-
 
NC_007951  Bxe_A4207  ABC taurine transporter, inner membrane subunit  38.2 
 
 
289 aa  140  9.999999999999999e-33  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_0840  taurine transporter subunit  36.68 
 
 
275 aa  140  1.9999999999999998e-32  Enterobacter sp. 638  Bacteria  normal  normal  0.276647 
 
 
-
 
NC_010465  YPK_0260  taurine transporter subunit  35.19 
 
 
284 aa  140  1.9999999999999998e-32  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3693  taurine transporter subunit  35.19 
 
 
284 aa  140  1.9999999999999998e-32  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_3936  taurine transporter subunit  35.19 
 
 
284 aa  140  1.9999999999999998e-32  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_3459  binding-protein-dependent transport systems inner membrane component  35.1 
 
 
283 aa  140  3e-32  Xanthobacter autotrophicus Py2  Bacteria  normal  0.703735  normal 
 
 
-
 
NC_009253  Dred_1575  binding-protein-dependent transport systems inner membrane component  31.84 
 
 
254 aa  139  3.9999999999999997e-32  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0747147  n/a   
 
 
-
 
NC_008752  Aave_0047  binding-protein-dependent transport systems inner membrane component  36.97 
 
 
306 aa  139  3.9999999999999997e-32  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_16930  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  35.8 
 
 
322 aa  138  7.999999999999999e-32  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.327  normal  0.410158 
 
 
-
 
NC_009636  Smed_1127  binding-protein-dependent transport systems inner membrane component  37.96 
 
 
267 aa  138  8.999999999999999e-32  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_1800  binding-protein-dependent transport systems inner membrane component  35.71 
 
 
257 aa  138  8.999999999999999e-32  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_1575  binding-protein-dependent transport systems inner membrane component  31.22 
 
 
266 aa  137  1e-31  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_0676  binding-protein-dependent transport systems inner membrane component  34.02 
 
 
279 aa  136  3.0000000000000003e-31  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.30868 
 
 
-
 
NC_010511  M446_0464  binding-protein-dependent transport systems inner membrane component  36.41 
 
 
288 aa  136  4e-31  Methylobacterium sp. 4-46  Bacteria  normal  0.349721  hitchhiker  0.00645779 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>