More than 300 homologs were found in PanDaTox collection
for query gene PP_2554 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007348  Reut_B5035  4-hydroxyphenylpyruvate dioxygenase  53.26 
 
 
632 aa  647  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B0882  4-hydroxyphenylpyruvate dioxygenase  58.19 
 
 
627 aa  700  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.923988 
 
 
-
 
NC_007948  Bpro_4496  4-hydroxyphenylpyruvate dioxygenase  53.1 
 
 
638 aa  667  Polaromonas sp. JS666  Bacteria  normal  normal  0.460677 
 
 
-
 
NC_010524  Lcho_0418  xylose isomerase domain-containing protein  51.79 
 
 
635 aa  647  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009656  PSPA7_0327  hypothetical protein  78.61 
 
 
634 aa  981  Pseudomonas aeruginosa PA7  Bacteria  normal  0.627098  n/a   
 
 
-
 
NC_010501  PputW619_2225  4-hydroxyphenylpyruvate dioxygenase  93.07 
 
 
635 aa  1214  Pseudomonas putida W619  Bacteria  normal  0.44574  normal 
 
 
-
 
NC_008543  Bcen2424_5305  4-hydroxyphenylpyruvate dioxygenase  56.84 
 
 
630 aa  683  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.114512 
 
 
-
 
NC_007005  Psyr_2130  4-hydroxyphenylpyruvate dioxygenase  80.94 
 
 
635 aa  1067  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0402618  normal  0.678263 
 
 
-
 
NC_010678  Rpic_4305  4-hydroxyphenylpyruvate dioxygenase  54.74 
 
 
628 aa  656  Ralstonia pickettii 12J  Bacteria  normal  0.92924  normal 
 
 
-
 
NC_012791  Vapar_3320  4-hydroxyphenylpyruvate dioxygenase  51.11 
 
 
630 aa  641  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_4567  Xylose isomerase domain protein TIM barrel  58.44 
 
 
627 aa  709  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_5194  4-hydroxyphenylpyruvate dioxygenase  57.23 
 
 
630 aa  699  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_3362  4-hydroxyphenylpyruvate dioxygenase  98.43 
 
 
635 aa  1275  Pseudomonas putida GB-1  Bacteria  normal  0.283519  normal  0.789434 
 
 
-
 
NC_007511  Bcep18194_B0343  4-hydroxyphenylpyruvate dioxygenase  57.23 
 
 
630 aa  706  Burkholderia sp. 383  Bacteria  normal  normal  0.880013 
 
 
-
 
NC_012560  Avin_38100  4-hydroxyphenylpyruvate dioxygenase  80.35 
 
 
632 aa  1025  Azotobacter vinelandii DJ  Bacteria  normal  0.749235  n/a   
 
 
-
 
NC_010622  Bphy_1081  4-hydroxyphenylpyruvate dioxygenase  58.61 
 
 
628 aa  718  Burkholderia phymatum STM815  Bacteria  normal  0.796659  normal  0.416218 
 
 
-
 
NC_012857  Rpic12D_4415  4-hydroxyphenylpyruvate dioxygenase  54.74 
 
 
628 aa  656  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_1560  4-hydroxyphenylpyruvate dioxygenase  51.51 
 
 
632 aa  637  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.288895  normal 
 
 
-
 
NC_009512  Pput_3161  4-hydroxyphenylpyruvate dioxygenase  100 
 
 
635 aa  1295  Pseudomonas putida F1  Bacteria  normal  0.706766  normal 
 
 
-
 
NC_007492  Pfl01_4905  4-hydroxyphenylpyruvate dioxygenase  82.55 
 
 
633 aa  1068  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2554  4-hydroxyphenylpyruvate dioxygenase  100 
 
 
635 aa  1295  Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.00914053 
 
 
-
 
NC_010515  Bcenmc03_4963  4-hydroxyphenylpyruvate dioxygenase  56.84 
 
 
630 aa  684  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0115166 
 
 
-
 
NC_008391  Bamb_4666  4-hydroxyphenylpyruvate dioxygenase  57.33 
 
 
630 aa  686  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.735725 
 
 
-
 
NC_010086  Bmul_3418  4-hydroxyphenylpyruvate dioxygenase  57 
 
 
630 aa  689  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0242311  normal  0.14685 
 
 
-
 
NC_004578  PSPTO_2346  4-hydroxyphenylpyruvate dioxygenase, putative  81.26 
 
 
635 aa  1071  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_03000  hypothetical protein  78.92 
 
 
634 aa  990  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.00135939 
 
 
-
 
NC_008061  Bcen_3062  4-hydroxyphenylpyruvate dioxygenase  56.84 
 
 
630 aa  683  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0292  4-hydroxyphenylpyruvate dioxygenase  51.12 
 
 
615 aa  623  1e-177  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II2059  4-hydroxyphenylpyruvate dioxygenase, putative  49.93 
 
 
687 aa  618  1e-175  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_0122  Xylose isomerase domain protein TIM barrel  51.04 
 
 
627 aa  594  1e-168  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.134725  n/a   
 
 
-
 
NC_003296  RS02058  hypothetical protein  52.61 
 
 
626 aa  590  1e-167  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0224521  normal  0.842888 
 
 
-
 
NC_009485  BBta_6113  4-hydroxyphenylpyruvate dioxygenase  49.84 
 
 
623 aa  577  1e-163  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.471766 
 
 
-
 
NC_010511  M446_4755  4-hydroxyphenylpyruvate dioxygenase  50.24 
 
 
637 aa  570  1e-161  Methylobacterium sp. 4-46  Bacteria  normal  0.304127  normal 
 
 
-
 
NC_013946  Mrub_0606  4-hydroxyphenylpyruvate dioxygenase  46.63 
 
 
624 aa  571  1e-161  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.0633938 
 
 
-
 
NC_009668  Oant_4428  4-hydroxyphenylpyruvate dioxygenase  48.72 
 
 
633 aa  556  1e-157  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011366  Rleg2_5952  4-hydroxyphenylpyruvate dioxygenase  47.6 
 
 
631 aa  556  1e-157  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0955687  decreased coverage  0.00791612 
 
 
-
 
NC_008254  Meso_0782  4-hydroxyphenylpyruvate dioxygenase  47.28 
 
 
630 aa  546  1e-154  Chelativorans sp. BNC1  Bacteria  normal  0.817905  n/a   
 
 
-
 
NC_012858  Rleg_7092  4-hydroxyphenylpyruvate dioxygenase  46.65 
 
 
631 aa  547  1e-154  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.26168  normal 
 
 
-
 
NC_009620  Smed_4204  xylose isomerase domain-containing protein  47.07 
 
 
629 aa  538  1e-151  Sinorhizobium medicae WSM419  Bacteria  normal  0.460434  normal 
 
 
-
 
NC_009654  Mmwyl1_3913  xylose isomerase domain-containing protein  44.66 
 
 
617 aa  511  1e-143  Marinomonas sp. MWYL1  Bacteria  normal  0.974395  normal 
 
 
-
 
NC_007794  Saro_1586  4-hydroxyphenylpyruvate dioxygenase  45.22 
 
 
621 aa  500  1e-140  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.435654  n/a   
 
 
-
 
NC_011988  Avi_5449  4-hydroxyphenylpyruvate dioxygenase  44.55 
 
 
615 aa  491  1e-137  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_5095  Xylose isomerase domain-containing protein TIM barrel  44.74 
 
 
604 aa  472  1e-131  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.0443788 
 
 
-
 
NC_008010  Dgeo_2375  xylose isomerase-like TIM barrel  51.85 
 
 
477 aa  463  1e-129  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_4090  Xylose isomerase domain protein TIM barrel  43.75 
 
 
645 aa  462  1e-129  Nakamurella multipartita DSM 44233  Bacteria  normal  hitchhiker  0.00816269 
 
 
-
 
NC_011886  Achl_3855  Xylose isomerase domain protein TIM barrel  40.22 
 
 
624 aa  442  1e-122  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008541  Arth_4079  xylose isomerase domain-containing protein  39.97 
 
 
629 aa  432  1e-119  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_1477  Xylose isomerase domain protein TIM barrel  40.51 
 
 
596 aa  390  1e-107  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0230944  normal  0.313669 
 
 
-
 
NC_009075  BURPS668_A0577  4-hydroxyphenylpyruvate dioxygenase  67.28 
 
 
687 aa  357  5e-97  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0481  AP endonuclease  66.91 
 
 
684 aa  356  8e-97  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0891  AP endonuclease  66.91 
 
 
684 aa  356  8e-97  Burkholderia mallei NCTC 10247  Bacteria  normal  0.940921  n/a   
 
 
-
 
NC_006349  BMAA0848  putative 4-hydroxyphenylpyruvate dioxygenase  66.91 
 
 
684 aa  356  8e-97  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_2205  putative 4-hydroxyphenylpyruvate dioxygenase  66.91 
 
 
684 aa  356  8e-97  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1752  putative 4-hydroxyphenylpyruvate dioxygenase  66.91 
 
 
684 aa  356  8e-97  Burkholderia mallei SAVP1  Bacteria  normal  0.10433  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1894  putative amino acid dioxygenase  66.91 
 
 
684 aa  356  8e-97  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_1437  4-hydroxyphenylpyruvate dioxygenase  37.46 
 
 
351 aa  220  7e-56  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_02177  4-hydroxyphenylpyruvate dioxygenase  35.65 
 
 
357 aa  196  2e-48  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_003655  4-hydroxyphenylpyruvate dioxygenase  36.45 
 
 
357 aa  194  4e-48  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0960  4-hydroxyphenylpyruvate dioxygenase  36.28 
 
 
369 aa  193  1e-47  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I3106  4-hydroxyphenylpyruvate dioxygenase  37.09 
 
 
365 aa  190  6e-47  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2866  4-hydroxyphenylpyruvate dioxygenase  37.2 
 
 
365 aa  189  1e-46  Burkholderia phymatum STM815  Bacteria  normal  hitchhiker  1.87167e-05 
 
 
-
 
NC_009074  BURPS668_3784  4-hydroxyphenylpyruvate dioxygenase  36.9 
 
 
365 aa  188  3e-46  Burkholderia pseudomallei 668  Bacteria  normal  0.205691  n/a   
 
 
-
 
NC_009076  BURPS1106A_3845  4-hydroxyphenylpyruvate dioxygenase  36.9 
 
 
365 aa  188  3e-46  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0016  4-hydroxyphenylpyruvate dioxygenase  36.9 
 
 
365 aa  188  3e-46  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_3528  4-hydroxyphenylpyruvate dioxygenase  36.9 
 
 
365 aa  188  3e-46  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0003  4-hydroxyphenylpyruvate dioxygenase  36.9 
 
 
365 aa  188  3e-46  Burkholderia mallei SAVP1  Bacteria  normal  0.809  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3120  4-hydroxyphenylpyruvate dioxygenase  36.9 
 
 
365 aa  188  3e-46  Burkholderia mallei SAVP1  Bacteria  normal  0.379899  n/a   
 
 
-
 
NC_006348  BMA2582  4-hydroxyphenylpyruvate dioxygenase  36.9 
 
 
365 aa  188  3e-46  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1975  4-hydroxyphenylpyruvate dioxygenase  36.9 
 
 
365 aa  188  3e-46  Burkholderia mallei NCTC 10229  Bacteria  normal  0.673327  n/a   
 
 
-
 
NC_008781  Pnap_1120  4-hydroxyphenylpyruvate dioxygenase  35.1 
 
 
360 aa  187  4e-46  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A0346  4-hydroxyphenylpyruvate dioxygenase  36.12 
 
 
370 aa  187  4e-46  Methylibium petroleiphilum PM1  Bacteria  normal  0.152583  normal 
 
 
-
 
NC_010524  Lcho_0434  4-hydroxyphenylpyruvate dioxygenase  34.22 
 
 
358 aa  185  2e-45  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_012791  Vapar_4766  4-hydroxyphenylpyruvate dioxygenase  35.67 
 
 
375 aa  184  3e-45  Variovorax paradoxus S110  Bacteria  normal  0.578295  n/a   
 
 
-
 
NC_008542  Bcen2424_0321  4-hydroxyphenylpyruvate dioxygenase  36.01 
 
 
365 aa  183  8e-45  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_2785  4-hydroxyphenylpyruvate dioxygenase  36.01 
 
 
365 aa  183  8e-45  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0301  4-hydroxyphenylpyruvate dioxygenase  36.01 
 
 
365 aa  183  8e-45  Burkholderia cenocepacia MC0-3  Bacteria  normal  hitchhiker  0.000140026 
 
 
-
 
NC_007948  Bpro_4213  4-hydroxyphenylpyruvate dioxygenase  34.53 
 
 
376 aa  183  8e-45  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_0240  4-hydroxyphenylpyruvate dioxygenase  36.01 
 
 
365 aa  182  2e-44  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0223  4-hydroxyphenylpyruvate dioxygenase  35.71 
 
 
365 aa  181  3e-44  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.376735  hitchhiker  1.4808e-06 
 
 
-
 
NC_008463  PA14_53070  4-hydroxyphenylpyruvate dioxygenase  35.56 
 
 
357 aa  181  3e-44  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A0286  4-hydroxyphenylpyruvate dioxygenase  36.01 
 
 
365 aa  181  3e-44  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.408126 
 
 
-
 
NC_007510  Bcep18194_A3420  4-hydroxyphenylpyruvate dioxygenase  35.71 
 
 
365 aa  181  4e-44  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_0248  4-hydroxyphenylpyruvate dioxygenase  36.01 
 
 
365 aa  181  5e-44  Burkholderia ambifaria MC40-6  Bacteria  normal  hitchhiker  0.000564922 
 
 
-
 
NC_009524  PsycPRwf_1040  4-hydroxyphenylpyruvate dioxygenase  33.92 
 
 
372 aa  180  7e-44  Psychrobacter sp. PRwf-1  Bacteria  normal  0.53626  normal 
 
 
-
 
NC_012560  Avin_34750  4-hydroxyphenylpyruvate dioxygenase  35.58 
 
 
359 aa  179  1e-43  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3330  4-hydroxyphenylpyruvate dioxygenase  32.84 
 
 
358 aa  179  1e-43  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  decreased coverage  0.000135901 
 
 
-
 
NC_008786  Veis_2137  4-hydroxyphenylpyruvate dioxygenase  35.34 
 
 
377 aa  179  1e-43  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.658248 
 
 
-
 
NC_012856  Rpic12D_3041  4-hydroxyphenylpyruvate dioxygenase  34.73 
 
 
368 aa  179  1e-43  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1696  4-hydroxyphenylpyruvate dioxygenase  36.9 
 
 
360 aa  179  2e-43  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.141185 
 
 
-
 
NC_009511  Swit_3865  4-hydroxyphenylpyruvate dioxygenase  34.04 
 
 
367 aa  179  2e-43  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_3553  4-hydroxyphenylpyruvate dioxygenase  32.84 
 
 
363 aa  179  2e-43  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.225452  n/a   
 
 
-
 
NC_010682  Rpic_3388  4-hydroxyphenylpyruvate dioxygenase  34.73 
 
 
368 aa  179  2e-43  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_2997  4-hydroxyphenylpyruvate dioxygenase  34.74 
 
 
360 aa  178  3e-43  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.171273  n/a   
 
 
-
 
NC_010681  Bphyt_3671  4-hydroxyphenylpyruvate dioxygenase  34.08 
 
 
365 aa  177  5e-43  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0292973  hitchhiker  9.43483e-08 
 
 
-
 
NC_011138  MADE_02541  4-hydroxyphenylpyruvate dioxygenase  33.14 
 
 
357 aa  177  6e-43  Alteromonas macleodii 'Deep ecotype'  Bacteria  unclonable  1.29405e-05  n/a   
 
 
-
 
NC_007492  Pfl01_2917  4-hydroxyphenylpyruvate dioxygenase  32.74 
 
 
358 aa  176  1e-42  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.433802  normal  0.723827 
 
 
-
 
NC_010002  Daci_4795  4-hydroxyphenylpyruvate dioxygenase  33.14 
 
 
364 aa  176  1e-42  Delftia acidovorans SPH-1  Bacteria  hitchhiker  0.00190969  normal  0.642599 
 
 
-
 
NC_009656  PSPA7_4652  4-hydroxyphenylpyruvate dioxygenase  35.56 
 
 
357 aa  174  4e-42  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_4191  4-hydroxyphenylpyruvate dioxygenase  34.8 
 
 
378 aa  174  5e-42  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_4925  4-hydroxyphenylpyruvate dioxygenase oxidoreductase protein  32.15 
 
 
357 aa  174  6e-42  Cupriavidus metallidurans CH34  Bacteria  normal  0.757451  normal  0.0949883 
 
 
-
 
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