More than 300 homologs were found in PanDaTox collection
for query gene Lferr_2264 on replicon NC_011206
Organism: Acidithiobacillus ferrooxidans ATCC 53993



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007651  BTH_I1153  ribonucleotide-diphosphate reductase subunit alpha  66.81 
 
 
995 aa  1257  Burkholderia thailandensis E264  Bacteria  normal  0.840642  n/a   
 
 
-
 
NC_007973  Rmet_3088  ribonucleotide-diphosphate reductase subunit alpha  65.24 
 
 
979 aa  1270  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3436  ribonucleotide-diphosphate reductase subunit alpha  67.2 
 
 
1001 aa  1264  Burkholderia phytofirmans PsJN  Bacteria  normal  0.124151  hitchhiker  0.00141337 
 
 
-
 
NC_010622  Bphy_2639  ribonucleotide-diphosphate reductase subunit alpha  65.99 
 
 
997 aa  1253  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010531  Pnec_0222  ribonucleotide-diphosphate reductase subunit alpha  65.62 
 
 
990 aa  1258  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  hitchhiker  8.8492e-05  normal  0.91407 
 
 
-
 
NC_008060  Bcen_0112  ribonucleotide-diphosphate reductase subunit alpha  65.71 
 
 
1001 aa  1244  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.290006  n/a   
 
 
-
 
NC_010508  Bcenmc03_0564  ribonucleotide-diphosphate reductase subunit alpha  65.71 
 
 
1001 aa  1244  Burkholderia cenocepacia MC0-3  Bacteria  normal  hitchhiker  0.00066464 
 
 
-
 
NC_010501  PputW619_1192  ribonucleotide-diphosphate reductase subunit alpha  62.06 
 
 
959 aa  1229  Pseudomonas putida W619  Bacteria  normal  0.159136  normal  0.293014 
 
 
-
 
NC_008254  Meso_2703  ribonucleotide-diphosphate reductase subunit alpha  65.23 
 
 
954 aa  1262  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_4236  ribonucleotide-diphosphate reductase subunit alpha  62.27 
 
 
959 aa  1233  Pseudomonas putida GB-1  Bacteria  normal  0.938732  normal 
 
 
-
 
NC_010682  Rpic_3047  ribonucleotide-diphosphate reductase subunit alpha  67.17 
 
 
994 aa  1275  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_3663  ribonucleotide-diphosphate reductase subunit alpha  64.79 
 
 
966 aa  1281  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0668  ribonucleotide-diphosphate reductase subunit alpha  63.79 
 
 
976 aa  1202  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.142133  n/a   
 
 
-
 
NC_011761  AFE_2638  ribonucleotide-diphosphate reductase, alpha subunit  100 
 
 
948 aa  1968  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2264  ribonucleoside-diphosphate reductase, alpha subunit  100 
 
 
948 aa  1968  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  decreased coverage  1.98665e-09 
 
 
-
 
NC_007908  Rfer_3347  ribonucleotide-diphosphate reductase subunit alpha  64.13 
 
 
981 aa  1256  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2458  ribonucleotide-diphosphate reductase subunit alpha  61.7 
 
 
969 aa  1209  Saccharophagus degradans 2-40  Bacteria  normal  0.0127946  normal 
 
 
-
 
NC_007925  RPC_3519  ribonucleotide-diphosphate reductase subunit alpha  64.35 
 
 
960 aa  1242  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.0732162 
 
 
-
 
NC_010524  Lcho_0382  ribonucleotide-diphosphate reductase subunit alpha  64.42 
 
 
958 aa  1261  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0345266 
 
 
-
 
NC_007948  Bpro_1107  ribonucleotide-diphosphate reductase subunit alpha  63.47 
 
 
969 aa  1274  Polaromonas sp. JS666  Bacteria  decreased coverage  0.000104617  normal 
 
 
-
 
NC_007951  Bxe_A0521  ribonucleotide-diphosphate reductase subunit alpha  67.02 
 
 
1001 aa  1258  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2639  ribonucleotide-diphosphate reductase subunit alpha  63.61 
 
 
974 aa  1263  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.618386  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1736  ribonucleotide-diphosphate reductase subunit alpha  60.28 
 
 
941 aa  1133  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_2789  ribonucleotide-diphosphate reductase subunit alpha  66.52 
 
 
995 aa  1258  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3857  ribonucleotide-diphosphate reductase subunit alpha  61.93 
 
 
949 aa  1182  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_3273  ribonucleotide-diphosphate reductase subunit alpha  66.81 
 
 
995 aa  1258  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_0864  ribonucleotide-diphosphate reductase subunit alpha  63.75 
 
 
983 aa  1246  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0575744 
 
 
-
 
NC_008781  Pnap_3385  ribonucleotide-diphosphate reductase subunit alpha  63.14 
 
 
967 aa  1260  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_3632  ribonucleotide-diphosphate reductase subunit alpha  62.83 
 
 
972 aa  1248  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_009076  BURPS1106A_3512  ribonucleotide-diphosphate reductase subunit alpha  66.81 
 
 
995 aa  1258  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0431  ribonucleotide-diphosphate reductase subunit alpha  66.81 
 
 
995 aa  1258  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_1496  ribonucleotide-diphosphate reductase subunit alpha  62.87 
 
 
968 aa  1239  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A3214  ribonucleotide-diphosphate reductase subunit alpha  64.91 
 
 
971 aa  1274  Methylibium petroleiphilum PM1  Bacteria  normal  0.472198  normal  0.0671441 
 
 
-
 
NC_009379  Pnuc_0204  ribonucleotide-diphosphate reductase subunit alpha  65.94 
 
 
993 aa  1261  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  hitchhiker  0.000988288  n/a   
 
 
-
 
NC_009074  BURPS668_3474  ribonucleotide-diphosphate reductase subunit alpha  66.81 
 
 
995 aa  1258  Burkholderia pseudomallei 668  Bacteria  normal  0.469348  n/a   
 
 
-
 
NC_009439  Pmen_3151  ribonucleotide-diphosphate reductase subunit alpha  63.31 
 
 
968 aa  1233  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.474699 
 
 
-
 
NC_010002  Daci_1501  ribonucleotide-diphosphate reductase subunit alpha  62.6 
 
 
973 aa  1218  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_2575  ribonucleoside-diphosphate reductase, alpha subunit  55.68 
 
 
806 aa  919  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.110528  n/a   
 
 
-
 
NC_008340  Mlg_2102  ribonucleoside-diphosphate reductase, alpha subunit  62.07 
 
 
928 aa  1148  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.503892  normal  0.151271 
 
 
-
 
NC_008390  Bamb_0497  ribonucleotide-diphosphate reductase subunit alpha  66.35 
 
 
999 aa  1248  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_49460  ribonucleotide-diphosphate reductase subunit alpha  63.72 
 
 
963 aa  1231  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.00878086  normal  0.899958 
 
 
-
 
NC_008542  Bcen2424_0594  ribonucleotide-diphosphate reductase subunit alpha  65.71 
 
 
1001 aa  1244  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_0436  ribonucleotide-diphosphate reductase subunit alpha  60.28 
 
 
941 aa  1133  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_4224  ribonucleotide-diphosphate reductase subunit alpha  63.62 
 
 
963 aa  1230  Pseudomonas aeruginosa PA7  Bacteria  normal  0.194007  n/a   
 
 
-
 
NC_009512  Pput_1210  ribonucleotide-diphosphate reductase subunit alpha  62.16 
 
 
959 aa  1234  Pseudomonas putida F1  Bacteria  normal  0.281558  normal  0.710482 
 
 
-
 
NC_008836  BMA10229_A1290  ribonucleotide-diphosphate reductase subunit alpha  66.81 
 
 
995 aa  1258  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A3679  ribonucleotide-diphosphate reductase subunit alpha  66.45 
 
 
998 aa  1253  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_1010  ribonucleotide-diphosphate reductase subunit alpha  63.22 
 
 
957 aa  1239  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_16410  ribonucleotide-diphosphate reductase subunit alpha  63.4 
 
 
815 aa  1008  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.795601  normal  0.531671 
 
 
-
 
NC_013158  Huta_2338  ribonucleoside-diphosphate reductase, alpha subunit  48.42 
 
 
815 aa  801  Halorhabdus utahensis DSM 12940  Archaea  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1671  ribonucleoside-diphosphate reductase, alpha subunit  63.28 
 
 
970 aa  1231  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2510  ribonucleotide-diphosphate reductase subunit alpha  66.81 
 
 
995 aa  1258  Burkholderia mallei ATCC 23344  Bacteria  normal  0.121944  n/a   
 
 
-
 
NC_006368  lpp1738  ribonucleotide-diphosphate reductase subunit alpha  61.63 
 
 
942 aa  1210  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1738  ribonucleotide-diphosphate reductase subunit alpha  61.63 
 
 
942 aa  1213  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_013093  Amir_3157  ribonucleoside-diphosphate reductase, alpha subunit  61.13 
 
 
950 aa  1147  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc2805  ribonucleotide-diphosphate reductase subunit alpha  66.89 
 
 
987 aa  1257  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.214099 
 
 
-
 
NC_013501  Rmar_0431  ribonucleoside-diphosphate reductase, alpha subunit  57.58 
 
 
926 aa  1025  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4610  ribonucleoside-diphosphate reductase, alpha subunit  60.65 
 
 
882 aa  1033  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.68692 
 
 
-
 
NC_013922  Nmag_2657  ribonucleoside-diphosphate reductase, alpha subunit  49.59 
 
 
836 aa  821  Natrialba magadii ATCC 43099  Archaea  normal  0.0654919  n/a   
 
 
-
 
NC_013889  TK90_1442  ribonucleoside-diphosphate reductase, alpha subunit  62.33 
 
 
964 aa  1239  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_1716  ribonucleoside-diphosphate reductase, alpha subunit  47.52 
 
 
1091 aa  836  Conexibacter woesei DSM 14684  Bacteria  normal  0.751506  normal  0.0180943 
 
 
-
 
NC_002620  TC0214  ribonucleotide-diphosphate reductase subunit alpha  50.74 
 
 
1047 aa  943  Chlamydia muridarum Nigg  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2621  ribonucleoside-diphosphate reductase, alpha subunit  55.57 
 
 
819 aa  942  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.136472  n/a   
 
 
-
 
NC_002947  PP_1179  ribonucleotide-diphosphate reductase subunit alpha  62.06 
 
 
959 aa  1234  Pseudomonas putida KT2440  Bacteria  normal  0.492267  normal  0.0911019 
 
 
-
 
NC_002977  MCA1634  ribonucleotide-diphosphate reductase subunit alpha  64.79 
 
 
969 aa  1267  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3717  ribonucleotide-diphosphate reductase subunit alpha  63.08 
 
 
970 aa  1226  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0503924 
 
 
-
 
NC_007434  BURPS1710b_3511  ribonucleotide-diphosphate reductase subunit alpha  66.81 
 
 
995 aa  1258  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4246  ribonucleotide-diphosphate reductase subunit alpha  62.56 
 
 
964 aa  1231  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0250585  normal  0.994007 
 
 
-
 
NC_012855  Rpic12D_4673  ribonucleoside-diphosphate reductase, alpha subunit  61.53 
 
 
949 aa  1150  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_0956  ribonucleotide-diphosphate reductase subunit alpha  63.66 
 
 
971 aa  1259  Variovorax paradoxus S110  Bacteria  normal  0.328606  n/a   
 
 
-
 
NC_007484  Noc_2527  ribonucleoside-diphosphate reductase  68.23 
 
 
1336 aa  760  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_33290  ribonucleoside-diphosphate reductase, alpha subunit precursor  66.79 
 
 
1338 aa  764  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_2637  ribonucleotide-diphosphate reductase subunit alpha  67.28 
 
 
994 aa  1280  Ralstonia pickettii 12D  Bacteria  normal  0.261091  normal 
 
 
-
 
NC_007406  Nwi_2888  ribonucleotide-diphosphate reductase subunit alpha  64.48 
 
 
969 aa  1280  Nitrobacter winogradskyi Nb-255  Bacteria  normal  decreased coverage  0.00821454 
 
 
-
 
NC_007404  Tbd_1976  ribonucleotide-diphosphate reductase subunit alpha  64.95 
 
 
974 aa  1263  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A2468  ribonucleotide-diphosphate reductase subunit alpha  64.5 
 
 
956 aa  1276  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.0692505  n/a   
 
 
-
 
NC_011992  Dtpsy_2942  ribonucleotide-diphosphate reductase subunit alpha  62.7 
 
 
974 aa  1248  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A2941  ribonucleotide-diphosphate reductase subunit alpha  66.19 
 
 
979 aa  1258  Ralstonia eutropha JMP134  Bacteria  normal  0.0976266  n/a   
 
 
-
 
NC_007333  Tfu_3001  ribonucleoside-diphosphate reductase  62.57 
 
 
821 aa  1065  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_2615  ribonucleotide-diphosphate reductase subunit alpha  65.26 
 
 
971 aa  1264  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.104389  n/a   
 
 
-
 
NC_010551  BamMC406_0522  ribonucleotide-diphosphate reductase subunit alpha  66.35 
 
 
999 aa  1247  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.114808 
 
 
-
 
NC_011071  Smal_0206  ribonucleoside-diphosphate reductase, alpha subunit  40.31 
 
 
803 aa  582  1e-164  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.959297 
 
 
-
 
NC_008578  Acel_1724  ribonucleoside-diphosphate reductase, alpha subunit  38.6 
 
 
781 aa  546  1e-154  Acidothermus cellulolyticus 11B  Bacteria  normal  0.784407  normal 
 
 
-
 
NC_009380  Strop_4388  ribonucleoside-diphosphate reductase, alpha subunit  38.95 
 
 
909 aa  546  1e-154  Salinispora tropica CNB-440  Bacteria  normal  0.370714  normal  0.249939 
 
 
-
 
NC_013131  Caci_2042  ribonucleoside-diphosphate reductase, alpha subunit  40.18 
 
 
841 aa  542  1e-152  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.930339  hitchhiker  0.00801348 
 
 
-
 
NC_009953  Sare_4877  ribonucleoside-diphosphate reductase, alpha subunit  38.54 
 
 
821 aa  541  1e-152  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.150541 
 
 
-
 
NC_009714  CHAB381_1730  ribonucleotide-diphosphate reductase subunit alpha  39.85 
 
 
793 aa  538  1e-151  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_1820  ribonucleotide-diphosphate reductase subunit alpha  37.72 
 
 
791 aa  538  1e-151  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_21940  ribonucleoside-diphosphate reductase, alpha subunit  37.2 
 
 
875 aa  535  1e-150  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.390444  normal  0.836113 
 
 
-
 
NC_013595  Sros_6269  Ribonucleoside-diphosphate reductase  43.81 
 
 
731 aa  530  1e-149  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0588825 
 
 
-
 
NC_003912  CJE0024  ribonucleotide-diphosphate reductase subunit alpha  37.98 
 
 
789 aa  526  1e-148  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_0026  ribonucleotide-diphosphate reductase subunit alpha  38.06 
 
 
789 aa  528  1e-148  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_008787  CJJ81176_0051  ribonucleotide-diphosphate reductase subunit alpha  38.1 
 
 
789 aa  528  1e-148  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_0054  ribonucleoside-diphosphate reductase, alpha subunit  38.04 
 
 
788 aa  525  1e-147  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_012039  Cla_0025  ribonucleotide-diphosphate reductase subunit alpha  37.37 
 
 
791 aa  523  1e-147  Campylobacter lari RM2100  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_1895  ribonucleotide-diphosphate reductase subunit alpha  38.77 
 
 
791 aa  520  1e-146  Campylobacter concisus 13826  Bacteria  normal  0.594858  n/a   
 
 
-
 
NC_013947  Snas_5566  ribonucleoside-diphosphate reductase subunit alpha  39.65 
 
 
771 aa  521  1e-146  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.704999  normal 
 
 
-
 
NC_008255  CHU_0451  ribonucleoside diphosphate reductase, alpha subunit  37.04 
 
 
794 aa  516  1e-145  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_009715  CCV52592_1122  ribonucleotide-diphosphate reductase subunit alpha  37.56 
 
 
790 aa  517  1e-145  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_1974  ribonucleoside-diphosphate reductase, alpha subunit  38.17 
 
 
802 aa  515  1e-144  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.150838 
 
 
-
 
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