| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2637 |
|---|
| Symbol | |
|---|
| ID | 8020301 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 2776488 |
|---|
| End bp | 2779472 |
|---|
| Gene Length | 2985 bp |
|---|
| Protein Length | 994 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644831417 |
|---|
| Product | ribonucleotide-diphosphate reductase subunit alpha |
|---|
| Protein accession | YP_002982580 |
|---|
| Protein GI | 241664220 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02506] ribonucleoside-diphosphate reductase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.261091 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGACGG CCCAATCCGA AATCCACTCC GGCACCGCCA ATCCTTCGCA ATTTGCGCAA
AGCGCTGGCG GCACGGCCGT GGCCCCCGGC ACCGCTTCCG GCGTCAATCT TGCCGACTAC
AAGATCATTC GCCGCAACGG CGCCGTGGTG AGCTTCGAGC CTTCGAAGAT CGCCGTGGCC
ATGACCAAGG CTTTCCTCGC CGTGAATGGC GGGCAGGGTG CTGCTTCCGC GCGTGTGCGC
GAGCTGGTCG ACCAACAAAC GCAGAACGTC GTGCGCGCAC TGCTGCGCAG CCGCCCGAAC
GGCGGCACGT TCCATATCGA AGACGTGCAG GATCAGGTGG AACTGGCCCT GATGCGCTCG
GGCGAGCACG ACGTGGCCCG CGCCTACGTG CTGTACCGCG AGCGCCGCGC CCAGGAGCGC
GCGCAAGCCG GTGAAACCCA GCAGCAACCG GCCTTCATCG GCCTGAACGT GACCGACGGC
GGCATCAGCC GCCCGCTGGA CATGGTGGCG CTGCGCAACG TGATCGTCTC GGCCTGCGAA
GGCCTGGGCG ACGCGGTGGA CCCGGAGCCG ATCCTCAAGG AAACGGTCAA GAACCTGTAT
GAAGGCGTGC CGATGACGCA GGTGTACGAC TCGGCCATCC TGGCCTCGCG TACCCTGATC
GAAAAGGACC CGGCGTACAG CCAGGTCACG GCGCGCATCC TGCTGCACAC GATCCGCCGC
GAAATCCTCG GCGAAGAAGT CACGCAAGCC GAAATGAGCA CGCGCTACGT CGACTACTTC
CCGCAGTTCA TCAAGCGCGG CATCAACGCC GAGCTGCTGG ACGACAAGCT GGCCCAGTTC
GACCTGGCCC GCCTGGGCGC GGCGCTGGAC GCCTCGCGCG ACTTCCAGTT CAACTACCTC
GGCCTGCAGA CGCTGTACGA CCGCTACTTC CTGCACATCA ACGAAACCCG CATCGAGATG
CCGCAGGCAT TCTTCATGCG TGTGGCGATG GGCCTGGCGC TGAACGAAAT CGACCGCGAA
GCCCGCGCCA TCGAGTTCTA CCAGCTGCTG TCGTCGTTCG ACTTCATGTC GAGCACGCCG
ACGCTGTTCA ACTCGGGCAC GCGCCGCTCG CAACTGTCGT CGTGCTACCT GACCACCGTG
TCGGACGATC TGGACGGCAT TTACGAAGCG CTGAAGGAAA ACGCGTTGCT GTCGAAGTTT
GCCGGCGGCC TGGGCAACGA CTGGACCAAC GTGCGCGCAC TTGGCTCGCA CATCAAGGGT
ACGAACGGCA AGAGCCAAGG CGTGGTGCCG TTCCTGAAGG TGGTCAACGA CACGGCCGTG
GCCGTGAACC AGGGCGGCAA GCGCAAGGGC GCCGTCTGCG CGTACCTGGA AACGTGGCAC
CTGGACATCG AAGAATTCCT GGAGCTGCGC AAGAACACGG GCGACGACCG CCGTCGCACG
CACGACATGA ACACGGCCAA CTGGATTCCG GACCTGTTCA TGAAGCGCGT GATGGAAGGT
GGCGAGTGGA CGCTGTTCTC GCCGTCCACC TGCCCGGACC TGCACGACAA GGTCGGCAAG
GCATTCGAAC AGGCCTACCT GGCCTACGAA GACAAGGTCG CGCGCGGCGA GATCAAGCTC
TTCAAGAAGA TGCCGGCGCT GCAACTGTGG CGCAAGATGC TGGGCATGCT GTTCGAAACC
GGCCACCCGT GGATCACGTT CAAGGATCCG TGCAACATCC GCAGCCCGCA GCAGCACGTG
GGCGTGGTGC ACAGCTCCAA CCTGTGCACG GAAATCACGC TGAACACCAA CGACAGCGAA
ATCGCCGTGT GCAACCTGGG TTCGGTCAAC CTGGTTGCCC ACCTGGTCAA GCAGGCCGAC
GGCAGCGTGG TGCTCGATCA CGAGAAACTG AAGAAGACCG TGCGCACGGC CATGCGCATG
CTCGACAACG TCATCGACAT CAACTACTAC GCCGTCAAGA AGGCGCGTGA TTCGAACCTG
CGCCACCGTC CGGTCGGCAT GGGCATCATG GGCTTCCAGG ACGCGCTGCA CGTACTGCGC
GTGCCGTACG CCAGCGAGGC AGCGGTGCAG TTTGCCGACA CCTCGATGGA AGCCGTGTGC
TACTACGCCT ACTGGGCGTC GACCGAGCTT GCTGAAGAGC GCGGCCGCTA CAGCAGCTAC
AAGGGCTCGC TGTGGGATCG CGGCATCCTG CCGCAAGACT CGCTCAAGCT GCTGGCCGAA
GAGCGCGGCG GCTACCTGGA AGCCGACATG TCGTCGACGA TGGACTGGGA CAGCCTGCGC
GGCCGCATCA AGCAGTACGG CATGCGCAAC TCGAACTGCG TGGCGATCGC CCCGACGGCA
ACGATCTCCA ACATCATCGG CGTGTCGGCC TGTATCGAGC CGACGTACCA GAACCTGTAC
GTCAAGTCGA ACCTGTCGGG CGAATTTACG GTGGTCAACG ACTACCTGGT GCGCGACCTG
AAGGCACGCG GCCTGTGGGA CGAAGTGATG GTCGCCGACC TGAAGTACTT CGACGGCTCG
CTGGCCCGCA TCGACCGCAT CCCGCAAGAC CTGCGCGACC TGTACGCCAC GGCCTTCGAA
GTGGAACCGC AATGGCTGGT GGAAGCGGCA TCGCGTCGCC AGAAGTGGAT CGATCAGGCC
CAGTCGCTGA ACATCTACAT GGCCGGCGCA TCGGGCAAGA AGCTGGACGA CACGTACAAG
CTGGCGTGGT TGCGTGGCCT GAAGACCACG TATTACCTGC GCACGATCGG CGCCACGCAC
GTCGAGAAGT CGACCGTGTC GCGCGGCACG CTGAATGCGG TGTCGTCGGG TAGCGATGTG
GGTGGTGTGT CGGCTGCAGG TGCGTCCGGC GTGACTTCAG CCGCGCCGAC CAGCGCACTG
GACGCCGCTG CTGCCACCGC CCAGGCCATG CCGGAAGCCG AAGGCGCCGT GTGCACGATG
CGCCCGGGCG ACCCCGGTTT CGAGGAATGC GAAGCCTGCC AATAA
|
|---|
| Protein sequence | MQTAQSEIHS GTANPSQFAQ SAGGTAVAPG TASGVNLADY KIIRRNGAVV SFEPSKIAVA
MTKAFLAVNG GQGAASARVR ELVDQQTQNV VRALLRSRPN GGTFHIEDVQ DQVELALMRS
GEHDVARAYV LYRERRAQER AQAGETQQQP AFIGLNVTDG GISRPLDMVA LRNVIVSACE
GLGDAVDPEP ILKETVKNLY EGVPMTQVYD SAILASRTLI EKDPAYSQVT ARILLHTIRR
EILGEEVTQA EMSTRYVDYF PQFIKRGINA ELLDDKLAQF DLARLGAALD ASRDFQFNYL
GLQTLYDRYF LHINETRIEM PQAFFMRVAM GLALNEIDRE ARAIEFYQLL SSFDFMSSTP
TLFNSGTRRS QLSSCYLTTV SDDLDGIYEA LKENALLSKF AGGLGNDWTN VRALGSHIKG
TNGKSQGVVP FLKVVNDTAV AVNQGGKRKG AVCAYLETWH LDIEEFLELR KNTGDDRRRT
HDMNTANWIP DLFMKRVMEG GEWTLFSPST CPDLHDKVGK AFEQAYLAYE DKVARGEIKL
FKKMPALQLW RKMLGMLFET GHPWITFKDP CNIRSPQQHV GVVHSSNLCT EITLNTNDSE
IAVCNLGSVN LVAHLVKQAD GSVVLDHEKL KKTVRTAMRM LDNVIDINYY AVKKARDSNL
RHRPVGMGIM GFQDALHVLR VPYASEAAVQ FADTSMEAVC YYAYWASTEL AEERGRYSSY
KGSLWDRGIL PQDSLKLLAE ERGGYLEADM SSTMDWDSLR GRIKQYGMRN SNCVAIAPTA
TISNIIGVSA CIEPTYQNLY VKSNLSGEFT VVNDYLVRDL KARGLWDEVM VADLKYFDGS
LARIDRIPQD LRDLYATAFE VEPQWLVEAA SRRQKWIDQA QSLNIYMAGA SGKKLDDTYK
LAWLRGLKTT YYLRTIGATH VEKSTVSRGT LNAVSSGSDV GGVSAAGASG VTSAAPTSAL
DAAAATAQAM PEAEGAVCTM RPGDPGFEEC EACQ
|
|---|
| |