More than 300 homologs were found in PanDaTox collection
for query gene Gbem_1660 on replicon NC_011146
Organism: Geobacter bemidjiensis Bem



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011146  Gbem_1660  response regulator receiver protein  100 
 
 
126 aa  254  2e-67  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2553  response regulator receiver protein  100 
 
 
126 aa  254  2e-67  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.1194499999999997e-20 
 
 
-
 
NC_009483  Gura_2934  response regulator receiver protein  91.94 
 
 
129 aa  233  9e-61  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000852899  n/a   
 
 
-
 
NC_007517  Gmet_2679  response regulator receiver domain-containing protein  84.3 
 
 
129 aa  213  7e-55  Geobacter metallireducens GS-15  Bacteria  normal  0.380915  normal  0.27601 
 
 
-
 
NC_002939  GSU1117  response regulator  81.1 
 
 
127 aa  212  1.9999999999999998e-54  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_0435  response regulator receiver protein  72.36 
 
 
124 aa  185  2e-46  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00876892  n/a   
 
 
-
 
NC_007498  Pcar_2017  response regulator CheY  66.95 
 
 
129 aa  173  9e-43  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3603  response regulator receiver protein  61.6 
 
 
131 aa  172  1.9999999999999998e-42  Geobacter lovleyi SZ  Bacteria  normal  0.656399  n/a   
 
 
-
 
NC_009943  Dole_1777  two component, sigma54 specific, Fis family transcriptional regulator  44.44 
 
 
465 aa  112  2.0000000000000002e-24  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_0984  two component, sigma54 specific, Fis family transcriptional regulator  46.49 
 
 
455 aa  107  4.0000000000000004e-23  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1802  two component, sigma-54 specific, Fis family transcriptional regulator  47.37 
 
 
459 aa  105  2e-22  Geobacter uraniireducens Rf4  Bacteria  normal  0.0135454  n/a   
 
 
-
 
NC_013223  Dret_0097  two component, sigma54 specific, transcriptional regulator, Fis family  39.17 
 
 
448 aa  105  2e-22  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_2145  two component signal transduction response regulator  42.86 
 
 
492 aa  103  1e-21  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  40.87 
 
 
473 aa  102  1e-21  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0845  response regulator receiver modulated metal dependent phosphohydrolase  40.87 
 
 
508 aa  102  2e-21  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.903712  hitchhiker  0.00198769 
 
 
-
 
NC_009523  RoseRS_0338  response regulator receiver modulated metal dependent phosphohydrolase  41.74 
 
 
513 aa  102  3e-21  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.102838 
 
 
-
 
NC_011146  Gbem_2591  two component, sigma54 specific, transcriptional regulator, Fis family  42.02 
 
 
457 aa  101  5e-21  Geobacter bemidjiensis Bem  Bacteria  normal  0.313706  n/a   
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  40 
 
 
473 aa  100  6e-21  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  41.18 
 
 
457 aa  100  6e-21  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  40 
 
 
473 aa  100  6e-21  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  41.18 
 
 
457 aa  99.4  1e-20  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_2158  two component, sigma54 specific, transcriptional regulator, Fis family  44.44 
 
 
453 aa  99.4  1e-20  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2107  response regulator receiver protein  34.96 
 
 
768 aa  99.4  1e-20  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_002977  MCA3100  response regulator  42.61 
 
 
122 aa  99.4  2e-20  Methylococcus capsulatus str. Bath  Bacteria  normal  0.182729  n/a   
 
 
-
 
NC_007517  Gmet_0812  two component, sigma54 specific, Fis family transcriptional regulator  40.17 
 
 
453 aa  99  2e-20  Geobacter metallireducens GS-15  Bacteria  normal  0.0257022  hitchhiker  0.00000328811 
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  42.86 
 
 
470 aa  99.4  2e-20  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_008554  Sfum_0648  response regulator receiver protein  41.18 
 
 
151 aa  98.6  3e-20  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2682  two component, sigma54 specific, transcriptional regulator, Fis family  43.97 
 
 
456 aa  97.8  4e-20  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000048168 
 
 
-
 
NC_008609  Ppro_1179  two component, sigma54 specific, Fis family transcriptional regulator  40.17 
 
 
457 aa  97.8  4e-20  Pelobacter propionicus DSM 2379  Bacteria  normal  0.655382  n/a   
 
 
-
 
NC_013216  Dtox_1013  two component, sigma54 specific, transcriptional regulator, Fis family  42.02 
 
 
456 aa  97.4  5e-20  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.0616674 
 
 
-
 
NC_010424  Daud_0677  response regulator receiver modulated metal dependent phosphohydrolase  43.27 
 
 
343 aa  97.4  5e-20  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.756866  n/a   
 
 
-
 
NC_009253  Dred_1510  two component, sigma54 specific, Fis family transcriptional regulator  43.36 
 
 
448 aa  97.4  6e-20  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2786  two component, sigma54 specific, transcriptional regulator, Fis family  40.52 
 
 
480 aa  97.1  7e-20  Geobacter lovleyi SZ  Bacteria  normal  0.543097  n/a   
 
 
-
 
NC_011146  Gbem_1534  two component, sigma54 specific, transcriptional regulator, Fis family  43.1 
 
 
456 aa  97.1  7e-20  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1994  two component signal transduction response regulator  40.18 
 
 
477 aa  97.1  8e-20  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0673  two component, sigma54 specific, transcriptional regulator, Fis family  42.98 
 
 
458 aa  96.7  9e-20  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1278  two component, sigma54 specific, Fis family transcriptional regulator  41.88 
 
 
452 aa  96.7  9e-20  Opitutus terrae PB90-1  Bacteria  normal  0.902353  normal 
 
 
-
 
NC_011145  AnaeK_0673  two component, sigma54 specific, transcriptional regulator, Fis family  42.98 
 
 
457 aa  96.7  9e-20  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0555  two component, sigma54 specific, Fis family transcriptional regulator  41.18 
 
 
457 aa  96.7  1e-19  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2737  response regulator receiver domain-containing protein  42.99 
 
 
139 aa  96.3  1e-19  Rhodoferax ferrireducens T118  Bacteria  hitchhiker  0.00154696  n/a   
 
 
-
 
NC_002939  GSU1495  sigma-54 dependent DNA-binding response regulator  42.06 
 
 
458 aa  95.9  2e-19  Geobacter sulfurreducens PCA  Bacteria  normal  0.301103  n/a   
 
 
-
 
NC_009253  Dred_2001  two component, sigma54 specific, Fis family transcriptional regulator  39.82 
 
 
454 aa  95.5  2e-19  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2668  response regulator receiver protein  35.48 
 
 
675 aa  95.5  2e-19  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_2392  two component, sigma54 specific, transcriptional regulator, Fis family  41.6 
 
 
458 aa  95.9  2e-19  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0321511  normal 
 
 
-
 
NC_011883  Ddes_0853  two component, sigma54 specific, transcriptional regulator, Fis family  42.45 
 
 
459 aa  95.5  2e-19  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.0538681  n/a   
 
 
-
 
NC_002939  GSU1320  sigma-54 dependent DNA-binding response regulator  41.88 
 
 
460 aa  95.1  3e-19  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU2915  sigma-54 dependent DNA-binding response regulator  41.18 
 
 
457 aa  95.1  3e-19  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1694  two component, sigma54 specific, transcriptional regulator, Fis family  40.71 
 
 
472 aa  94.7  3e-19  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1129  sigma-54 dependent DNA-binding response regulator  39.32 
 
 
453 aa  94.4  4e-19  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0789  two component, sigma54 specific, transcriptional regulator, Fis family  43.1 
 
 
448 aa  94.7  4e-19  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_0495  two component, sigma-54 specific, Fis family transcriptional regulator  41.18 
 
 
456 aa  94.7  4e-19  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0639  two component, sigma54 specific, Fis family transcriptional regulator  41.23 
 
 
455 aa  94.4  4e-19  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  46.02 
 
 
463 aa  94.4  4e-19  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_011146  Gbem_2521  two component, sigma54 specific, transcriptional regulator, Fis family  36.36 
 
 
457 aa  94.4  4e-19  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1698  two component, sigma54 specific, transcriptional regulator, Fis family  36.36 
 
 
457 aa  94.4  5e-19  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000740904 
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  40.18 
 
 
458 aa  94.4  5e-19  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2923  two component, sigma54 specific, Fis family transcriptional regulator  41.38 
 
 
450 aa  94  6e-19  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.726219 
 
 
-
 
NC_013223  Dret_0077  two component, sigma54 specific, transcriptional regulator, Fis family  41.51 
 
 
457 aa  94  6e-19  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0632  response regulator receiver protein  41.44 
 
 
135 aa  94  6e-19  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_0961  two component, sigma54 specific, Fis family transcriptional regulator  38.6 
 
 
454 aa  94  7e-19  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_1798  two component, sigma54 specific, Fis family transcriptional regulator  36 
 
 
466 aa  93.6  8e-19  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.634231  normal 
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  41.18 
 
 
461 aa  93.6  8e-19  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_010814  Glov_1377  two component, sigma54 specific, transcriptional regulator, Fis family  40.74 
 
 
462 aa  93.6  9e-19  Geobacter lovleyi SZ  Bacteria  normal  0.244526  n/a   
 
 
-
 
NC_007760  Adeh_0833  two component, sigma54 specific, Fis family transcriptional regulator  35.48 
 
 
466 aa  93.6  9e-19  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.96038  n/a   
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  41.18 
 
 
461 aa  93.6  9e-19  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_008554  Sfum_2092  two component, sigma54 specific, Fis family transcriptional regulator  37.19 
 
 
462 aa  93.6  9e-19  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.131918 
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  41.18 
 
 
461 aa  93.2  1e-18  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  41.18 
 
 
461 aa  93.2  1e-18  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_012892  B21_02106  hypothetical protein  41.18 
 
 
461 aa  93.2  1e-18  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2658  two component, sigma54 specific, transcriptional regulator, Fis family  41.03 
 
 
458 aa  93.2  1e-18  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_1954  two component, sigma54 specific, transcriptional regulator, Fis family  36.8 
 
 
464 aa  92.8  1e-18  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.611403  n/a   
 
 
-
 
NC_010718  Nther_0252  response regulator receiver protein  37.93 
 
 
239 aa  93.2  1e-18  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.114255 
 
 
-
 
NC_007517  Gmet_2924  two component, sigma54 specific, Fis family transcriptional regulator  39.83 
 
 
470 aa  92.8  1e-18  Geobacter metallireducens GS-15  Bacteria  normal  0.777319  hitchhiker  0.0000000000564278 
 
 
-
 
NC_011145  AnaeK_1869  two component, sigma54 specific, transcriptional regulator, Fis family  36.8 
 
 
464 aa  93.2  1e-18  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_2009  two component, sigma54 specific, Fis family transcriptional regulator  36.8 
 
 
463 aa  92.8  1e-18  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  41.18 
 
 
461 aa  93.2  1e-18  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_002939  GSU0598  sigma-54 dependent DNA-binding response regulator  39.83 
 
 
470 aa  92.4  2e-18  Geobacter sulfurreducens PCA  Bacteria  normal  0.885444  n/a   
 
 
-
 
NC_011891  A2cp1_0883  two component, sigma54 specific, transcriptional regulator, Fis family  34.68 
 
 
466 aa  92  2e-18  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.879866  n/a   
 
 
-
 
NC_010717  PXO_04881  two-component system regulatory protein  37.4 
 
 
466 aa  92.4  2e-18  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.476586  n/a   
 
 
-
 
NC_008751  Dvul_2039  two component, sigma54 specific, Fis family transcriptional regulator  36.21 
 
 
476 aa  92.8  2e-18  Desulfovibrio vulgaris DP4  Bacteria  normal  0.238588  normal 
 
 
-
 
NC_007908  Rfer_2741  two component, sigma54 specific, Fis family transcriptional regulator  38.94 
 
 
474 aa  92  2e-18  Rhodoferax ferrireducens T118  Bacteria  normal  0.0363909  n/a   
 
 
-
 
NC_009675  Anae109_0684  two component, sigma54 specific, Fis family transcriptional regulator  40.35 
 
 
456 aa  92.4  2e-18  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_1357  response regulator receiver protein  42.06 
 
 
144 aa  92.8  2e-18  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.48275  n/a   
 
 
-
 
NC_008609  Ppro_0710  two component, sigma54 specific, Fis family transcriptional regulator  40.74 
 
 
456 aa  92.4  2e-18  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1655  two component, sigma54 specific, Fis family transcriptional regulator  40.18 
 
 
462 aa  92  2e-18  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000025661  n/a   
 
 
-
 
NC_002967  TDE1969  sigma-54 dependent transcriptional regulator/response regulator  38.26 
 
 
473 aa  91.7  3e-18  Treponema denticola ATCC 35405  Bacteria  normal  0.440374  n/a   
 
 
-
 
NC_007498  Pcar_2160  two component signal transduction response regulator  41.18 
 
 
451 aa  91.7  3e-18  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000278347  n/a   
 
 
-
 
NC_008751  Dvul_2709  response regulator receiver sensor signal transduction histidine kinase  37.93 
 
 
501 aa  92  3e-18  Desulfovibrio vulgaris DP4  Bacteria  normal  0.710197  normal  0.745824 
 
 
-
 
NC_009483  Gura_2914  two component, sigma-54 specific, Fis family transcriptional regulator  36.28 
 
 
459 aa  91.7  3e-18  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1826  two component, sigma54 specific, transcriptional regulator, Fis family  41.44 
 
 
455 aa  91.7  3e-18  Geobacter lovleyi SZ  Bacteria  normal  0.048867  n/a   
 
 
-
 
NC_011769  DvMF_2109  two component, sigma54 specific, transcriptional regulator, Fis family  36.13 
 
 
515 aa  91.7  3e-18  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011145  AnaeK_0879  two component, sigma54 specific, transcriptional regulator, Fis family  34.68 
 
 
466 aa  92  3e-18  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0904  two component Fis family transcriptional regulator  42.11 
 
 
454 aa  91.3  4e-18  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.629928  normal 
 
 
-
 
NC_012918  GM21_1577  two component, sigma54 specific, transcriptional regulator, Fis family  40.17 
 
 
458 aa  91.3  4e-18  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_2245  two component, sigma54 specific, transcriptional regulator, Fis family  38.05 
 
 
460 aa  90.9  5e-18  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0215  two component, sigma54 specific, transcriptional regulator, Fis family  37.72 
 
 
528 aa  90.9  5e-18  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.0571306 
 
 
-
 
NC_011899  Hore_10620  response regulator receiver protein  42.74 
 
 
122 aa  90.9  5e-18  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00212992  n/a   
 
 
-
 
NC_011769  DvMF_1360  two component, sigma54 specific, transcriptional regulator, Fis family  38.02 
 
 
525 aa  90.9  6e-18  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_002939  GSU2506  sensory box protein/sigma-54 dependent DNA-binding response regulator  39.82 
 
 
564 aa  90.5  7e-18  Geobacter sulfurreducens PCA  Bacteria  normal  0.92979  n/a   
 
 
-
 
NC_009483  Gura_3647  two component, sigma-54 specific, Fis family transcriptional regulator  42.59 
 
 
471 aa  90.5  8e-18  Geobacter uraniireducens Rf4  Bacteria  normal  0.0209004  n/a   
 
 
-
 
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