24 homologs were found in PanDaTox collection
for query gene Sfri_3890 on replicon NC_008345
Organism: Shewanella frigidimarina NCIMB 400



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008345  Sfri_3890  transcriptional regulator, LuxR family protein  100 
 
 		 174 aa  358  2e-98  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_008322  Shewmr7_3948  LuxR family transcriptional regulator  79.65 
 
 		 181 aa  288  2e-77  Shewanella sp. MR-7  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008577  Shewana3_4063  LuxR family transcriptional regulator  79.07 
 
 		 181 aa  288  3e-77  Shewanella sp. ANA-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008321  Shewmr4_3855  LuxR family transcriptional regulator  79.07 
 
 		 181 aa  287  5.0000000000000004e-77  Shewanella sp. MR-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009997  Sbal195_4438  LuxR family transcriptional regulator  79.07 
 
 		 181 aa  286  8e-77  Shewanella baltica OS195  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009665  Shew185_4298  response regulator receiver protein  79.07 
 
 		 181 aa  286  9e-77  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_009052  Sbal_0102  response regulator receiver protein  79.07 
 
 		 175 aa  286  1e-76  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_011663  Sbal223_4243  transcriptional regulator, LuxR family  78.49 
 
 		 181 aa  285  2.9999999999999996e-76  Shewanella baltica OS223  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009092  Shew_3763  LuxR family transcriptional regulator  75.44 
 
 		 176 aa  274  5e-73  Shewanella loihica PV-4  Bacteria  normal  1  normal  0.415447 
 
 
-
 
NC_003910  CPS_1945  hypothetical protein  55.94 
 
 		 163 aa  171  5.999999999999999e-42  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_011138  MADE_00101  transcriptional regulator, LuxR family protein  45.51 
 
 		 169 aa  163  1.0000000000000001e-39  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_008700  Sama_2495  response regulator receiver protein  38.51 
 
 		 163 aa  123  1e-27  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007760  Adeh_3794  LuxR family transcriptional regulator  33.33 
 
 		 179 aa  102  4e-21  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_011145  AnaeK_3851  transcriptional regulator, LuxR family  32.5 
 
 		 206 aa  100  1e-20  Anaeromyxobacter sp. K  Bacteria  normal  0.321989  n/a   
 
 
-
 
NC_011891  A2cp1_3937  transcriptional regulator, LuxR family  32.5 
 
 		 206 aa  99.8  2e-20  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.59446  n/a   
 
 
-
 
NC_003910  CPS_3443  LuxR family transcriptional regulator  38.99 
 
 		 154 aa  95.5  3e-19  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_013440  Hoch_1339  transcriptional regulator, LuxR family  40 
 
 		 188 aa  85.5  4e-16  Haliangium ochraceum DSM 14365  Bacteria  normal  1  normal  0.919185 
 
 
-
 
NC_009675  Anae109_3914  response regulator receiver protein  46.91 
 
 		 208 aa  81.6  0.000000000000005  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.0257494  normal  0.794446 
 
 
-
 
NC_009952  Dshi_1034  transcriptional regulator  36.59 
 
 		 180 aa  62.4  0.000000003  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.130268  normal  0.442901 
 
 
-
 
NC_010682  Rpic_1748  transcriptional regulator, LuxR family  41.18 
 
 		 146 aa  60.5  0.00000001  Ralstonia pickettii 12J  Bacteria  normal  0.747406  normal  0.455372 
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  25 
 
 		 211 aa  44.7  0.0007  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_009832  Spro_4193  LuxR family transcriptional regulator  31.58 
 
 		 229 aa  43.9  0.001  Serratia proteamaculans 568  Bacteria  normal  1  normal  1 
 
 
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NC_009632  SaurJH1_1936  response regulator receiver  30.21 
 
 		 207 aa  42.4  0.003  Staphylococcus aureus subsp. aureus JH1  Bacteria  unclonable  0.000000150819  n/a   
 
 
-
 
NC_009487  SaurJH9_1902  two component LuxR family transcriptional regulator  30.21 
 
 		 207 aa  42.4  0.003  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00000041006  n/a   
 
 
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