| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_1339 |
|---|
| Symbol | |
|---|
| ID | 8543721 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 1776371 |
|---|
| End bp | 1776937 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 646386053 |
|---|
| Product | transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_003265788 |
|---|
| Protein GI | 262194579 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.919185 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGCGAGT CTGACTTCAC ATCCGAACGA CGCATCCTCA CGCTGAGTCT GGTCGCGTTC
ACACTCATGG GGTGCCTGGC GGCTGTCGAT CTCGTCTCTG ATTTCCGCGA GGGAAGCACG
GTGTTCCACG TGGGCATGGA GGGCGCGATC TTGCTGGTGG GCTTACTCGG CGCTGCGCTG
GTTGCCCGCA AGCTGAGCCA GATCACGCGC CTCGCCCGGC TCGCCGCTGC CGAGGCGCGC
GAGCTCGCCG GTGAGCTCGC GAAGAGCGCG GCCGAGGCCG AGCGATGGCG CGACGAGGCC
CGCGACCTCA TGCGCGGACT GGGCCAGGCC ATCGATGAGC AATTCGAGCG CTGGCAGCTA
TCGCCGGCCG AGAAAGAGGT CGGCCTGCTG CTGCTCAAGG GGCTCAGCCA CCGCGAGGTC
GCAGAGGCGC GCTCGGTCAC CGAGGCCACG GCCCGGCAGC AAGCCCGCGC CGTCTACAAG
AAGGCCGGGT TGAGCGGGCG ACATGAACTC GCGGCCTTCT TCCTCGAGGA CCTGATGCTG
CCGGCGGACG CCGACGGCAG CGCGTGA
|
|---|
| Protein sequence | MSESDFTSER RILTLSLVAF TLMGCLAAVD LVSDFREGST VFHVGMEGAI LLVGLLGAAL
VARKLSQITR LARLAAAEAR ELAGELAKSA AEAERWRDEA RDLMRGLGQA IDEQFERWQL
SPAEKEVGLL LLKGLSHREV AEARSVTEAT ARQQARAVYK KAGLSGRHEL AAFFLEDLML
PADADGSA
|
|---|
| |