| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_4063 |
|---|
| Symbol | |
|---|
| ID | 4480277 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 4882171 |
|---|
| End bp | 4882716 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 639728678 |
|---|
| Product | LuxR family transcriptional regulator |
|---|
| Protein accession | YP_871686 |
|---|
| Protein GI | 117922494 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGATA TTGTCATTAT TGGTCTGCTG GCACTGATCA TGTGCTTTAA GCTTTTTGAC
ATTAGTTCCG ACATTCAATT AGGCATTCCG CAATGGCATT TAGTGCAGGA AGCCATACTC
TTAGTGCTCA CCGCAGTCGG GGCCATCTAC CTCAGTTACG ATTTAATTCG CCGCTCACGC
GAGGTTAAAG CCTTAGCAAA ACGCCTCGAG TACGCCGATA AAAAAATCGA CAATATGTCG
ACCCAAATGC GTTCCGCCAG ACAGGAATAC AGCCAAGCCG TTGCAAACCA GTTTGATACT
TGGGGTTTTA CCAAGAGCGA GCAGCAAGTC GCATTTTTAT TGCTTAAAGG GCTGAGTTTT
AAAGAAATTG CCGAAGTGAG ACAGACAAAA GAGAAAACGG TGCGCCAACA GGCGTCGACC
ATTTATGGCA AGGCCGCCGT TGATGGCCGC CACACCTTTT GTGCTTGGTT TATGGAGGAT
TTTATTCAAG AACATAACCA AGAACTGGCG GCAAACGAGT CCGATAGCGC TCATAAAGCC
GCTTAA
|
|---|
| Protein sequence | MKDIVIIGLL ALIMCFKLFD ISSDIQLGIP QWHLVQEAIL LVLTAVGAIY LSYDLIRRSR
EVKALAKRLE YADKKIDNMS TQMRSARQEY SQAVANQFDT WGFTKSEQQV AFLLLKGLSF
KEIAEVRQTK EKTVRQQAST IYGKAAVDGR HTFCAWFMED FIQEHNQELA ANESDSAHKA
A
|
|---|
| |