Gene Sfri_3890 details

Gene Information

• Locus tag: Sfri_3890
• ID: 4280781
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 4644973
• End bp: 4645497
• Gene Length: 525 bp
• Protein Length: 174 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 638136711
• Product: transcriptional regulator, LuxR family protein
• Protein accession: YP_752554
• Protein GI: 114565040
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Plasmid Coverage information

• Num covering plasmid clones: 38
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGGATG TTGTCATTAT CTCTTTGCTG GGATTAAACA TGTTGTTTAA ACTTTTTGAC 
ATCATCGCCG ACACCCAATT GGGCGTTCCA GAATTGCACA TACTGCAAGA AAGCATACTG 
GTGTTGTTAA CTGCTATTGG AACAATCTAT TTGAGTTATG ATTTAATTCG TCGCTCACGC 
GAAACAAAAA AATTAGCCAA ACAGCTCATC AATGCAGATA AAAAAATCGA CAATATGTCG 
AGCCATATGC GCTCTGCAAG ACAAGAATAC AGTAAAGCCG TGTCGACCCA ATTTCATACT 
TGGAGCTTTA CCAAAAGCGA ACAACAAGTG GCATTTTTAT TGTTAAAAGG CCTTAGCTTT 
AAAGAGATTG CCGAAGTACG TCAAACCAAA GAAAAAACAG TAAGACAACA AGCTTCATCC 
ATTTACGGTA AAGCGACAGT CGACGGGCGA CACACTTTTT GTGCTTGGTT TATGGAAGAT 
TTCATTCAAG AACATGACCA AGACTTGGTC AATAACTATC AATAA 

 

Protein sequence

MKDVVIISLL GLNMLFKLFD IIADTQLGVP ELHILQESIL VLLTAIGTIY LSYDLIRRSR 
ETKKLAKQLI NADKKIDNMS SHMRSARQEY SKAVSTQFHT WSFTKSEQQV AFLLLKGLSF 
KEIAEVRQTK EKTVRQQASS IYGKATVDGR HTFCAWFMED FIQEHDQDLV NNYQ