170 homologs were found in PanDaTox collection
for query gene Rmet_1294 on replicon NC_007973
Organism: Cupriavidus metallidurans CH34



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007973  Rmet_1294  XRE family plasmid maintenance system antidote protein  100 
 
 
127 aa  254  2e-67  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.000401984  normal  0.503235 
 
 
-
 
NC_008825  Mpe_A2823  putative plasmid maintenance system antidote protein  67.74 
 
 
167 aa  129  2.0000000000000002e-29  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4745  XRE family plasmid maintenance system antidote protein  40.24 
 
 
104 aa  73.9  0.0000000000006  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.693896  normal 
 
 
-
 
NC_011060  Ppha_2031  XRE family plasmid maintenance system antidote protein  37.97 
 
 
106 aa  72.4  0.000000000002  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.65469  n/a   
 
 
-
 
NC_006369  lpl1093  hypothetical protein  42.03 
 
 
107 aa  72  0.000000000003  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007484  Noc_0571  XRE family transcriptional regulator  43.59 
 
 
107 aa  70.1  0.000000000009  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2430  plasmid maintenance system antidote protein  38.1 
 
 
108 aa  70.1  0.00000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.216096  n/a   
 
 
-
 
NC_011901  Tgr7_1105  XRE family plasmid maintenance system antidote protein  38.96 
 
 
105 aa  68.9  0.00000000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.912318  n/a   
 
 
-
 
NC_013530  Xcel_0947  XRE family plasmid maintenance system antidote protein  39.44 
 
 
106 aa  68.2  0.00000000004  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_0019  XRE family plasmid maintenance system antidote protein  42.5 
 
 
98 aa  67.4  0.00000000007  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191318  normal  0.0141037 
 
 
-
 
NC_009719  Plav_2942  XRE family plasmid maintenance system antidote protein  43.48 
 
 
104 aa  67  0.00000000009  Parvibaculum lavamentivorans DS-1  Bacteria  hitchhiker  0.00934275  hitchhiker  0.000711707 
 
 
-
 
NC_010814  Glov_0608  XRE family plasmid maintenance system antidote protein  37.5 
 
 
98 aa  66.2  0.0000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_2524  XRE family plasmid maintenance system antidote protein  37.8 
 
 
103 aa  65.5  0.0000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0379048  n/a   
 
 
-
 
NC_007925  RPC_3187  XRE family plasmid maintenance system antidote protein  46.58 
 
 
94 aa  64.7  0.0000000004  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0487579  normal 
 
 
-
 
NC_008608  Ppro_3836  XRE family plasmid maintenance system antidote protein  39.74 
 
 
96 aa  64.7  0.0000000004  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3001  XRE family plasmid maintenance system antidote protein  40.85 
 
 
100 aa  63.9  0.0000000007  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.770477 
 
 
-
 
NC_013174  Jden_0768  XRE family plasmid maintenance system antidote protein  36.62 
 
 
100 aa  63.9  0.0000000007  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_3818  XRE family plasmid maintenance system antidote protein  39.44 
 
 
94 aa  63.2  0.000000001  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00442118  n/a   
 
 
-
 
NC_012560  Avin_27690  plasmid maintenance system antidote protein  37.33 
 
 
99 aa  62.4  0.000000002  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1669  XRE family plasmid maintenance system antidote protein  40.54 
 
 
101 aa  62.4  0.000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008789  Hhal_1672  XRE family plasmid maintenance system antidote protein  44.44 
 
 
108 aa  62  0.000000002  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_2927  XRE family plasmid maintenance system antidote protein  41.89 
 
 
97 aa  62.8  0.000000002  Methylobacterium populi BJ001  Bacteria  normal  0.225345  normal 
 
 
-
 
NC_011901  Tgr7_0043  XRE family plasmid maintenance system antidote protein  45.07 
 
 
99 aa  62  0.000000003  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4370  XRE family plasmid maintenance system antidote protein  40.58 
 
 
106 aa  62  0.000000003  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0372671  normal  0.0360192 
 
 
-
 
NC_011761  AFE_1754  virulence-associated protein, putative  37.5 
 
 
104 aa  61.2  0.000000004  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.0614542  n/a   
 
 
-
 
NC_007778  RPB_3236  XRE family plasmid maintenance system antidote protein  45.21 
 
 
94 aa  61.6  0.000000004  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.390775  normal 
 
 
-
 
NC_009483  Gura_1216  XRE family plasmid maintenance system antidote protein  39.44 
 
 
101 aa  61.6  0.000000004  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2571  XRE family plasmid maintenance system antidote protein  35.16 
 
 
109 aa  61.2  0.000000005  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_2896  XRE family plasmid maintenance system antidote protein  36.49 
 
 
95 aa  60.8  0.000000006  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.543418 
 
 
-
 
NC_007974  Rmet_4764  plasmid maintenance system antidote protein  42.86 
 
 
115 aa  60.5  0.000000007  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.559463 
 
 
-
 
NC_007517  Gmet_2972  XRE family plasmid maintenance system antidote protein  38.27 
 
 
101 aa  60.5  0.000000008  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_0750  XRE family plasmid maintenance system antidote protein  37.84 
 
 
117 aa  60.5  0.000000008  Jonesia denitrificans DSM 20603  Bacteria  normal  0.236771  normal 
 
 
-
 
NC_007484  Noc_0417  XRE family transcriptional regulator  36.23 
 
 
104 aa  59.7  0.00000001  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_4500  XRE family plasmid maintenance system antidote protein  35.37 
 
 
99 aa  59.7  0.00000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.550402 
 
 
-
 
NC_010717  PXO_03903  addiction module antidote protein, HigA family  37.97 
 
 
96 aa  59.7  0.00000001  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.433469  n/a   
 
 
-
 
NC_009511  Swit_2184  XRE family plasmid maintenance system antidote protein  38.89 
 
 
102 aa  59.7  0.00000001  Sphingomonas wittichii RW1  Bacteria  normal  hitchhiker  0.00000446782 
 
 
-
 
NC_011060  Ppha_1377  XRE family plasmid maintenance system antidote protein  36.23 
 
 
99 aa  59.3  0.00000002  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_0089  DNA-binding protein, putative  34.94 
 
 
105 aa  59.3  0.00000002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.993479  n/a   
 
 
-
 
NC_011206  Lferr_0091  XRE family plasmid maintenance system antidote protein  34.94 
 
 
105 aa  59.3  0.00000002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_2505  XRE family plasmid maintenance system antidote protein  30.59 
 
 
103 aa  59.3  0.00000002  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.0000574166  normal 
 
 
-
 
NC_009943  Dole_1385  XRE family plasmid maintenance system antidote protein  36.71 
 
 
103 aa  59.3  0.00000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3198  XRE family plasmid maintenance system antidote protein  38.46 
 
 
104 aa  58.2  0.00000003  Marinobacter aquaeolei VT8  Bacteria  normal  0.562378  n/a   
 
 
-
 
NC_011060  Ppha_2447  XRE family plasmid maintenance system antidote protein  40.74 
 
 
128 aa  58.9  0.00000003  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.56382  n/a   
 
 
-
 
NC_009943  Dole_2564  XRE family plasmid maintenance system antidote protein  35.21 
 
 
116 aa  58.5  0.00000003  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.63579  n/a   
 
 
-
 
NC_007484  Noc_1291  XRE family transcriptional regulator  40.28 
 
 
98 aa  58.2  0.00000004  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_1425  XRE family plasmid maintenance system antidote protein  33.33 
 
 
99 aa  58.2  0.00000004  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3225  XRE family plasmid maintenance system antidote protein  36.47 
 
 
106 aa  58.2  0.00000004  Caulobacter sp. K31  Bacteria  normal  normal  0.114466 
 
 
-
 
NC_007404  Tbd_0672  plasmid maintenance system antidote protein  39.44 
 
 
171 aa  57.4  0.00000006  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.15068  normal  0.669698 
 
 
-
 
NC_007413  Ava_3243  plasmid maintenance system antidote protein  35.14 
 
 
102 aa  57.4  0.00000006  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0211861  normal 
 
 
-
 
NC_011901  Tgr7_2786  XRE family plasmid maintenance system antidote protein  39.44 
 
 
106 aa  57.4  0.00000006  Thioalkalivibrio sp. HL-EbGR7  Bacteria  unclonable  0.000000094081  n/a   
 
 
-
 
NC_010803  Clim_1368  XRE family plasmid maintenance system antidote protein  35.62 
 
 
102 aa  57.4  0.00000006  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_5444  XRE family plasmid maintenance system antidote protein  31.11 
 
 
109 aa  57.4  0.00000007  Methylobacterium sp. 4-46  Bacteria  normal  0.401369  normal  0.26731 
 
 
-
 
NC_011004  Rpal_3616  XRE family plasmid maintenance system antidote protein  38.03 
 
 
100 aa  57  0.00000008  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.322775  n/a   
 
 
-
 
NC_010681  Bphyt_3070  XRE family plasmid maintenance system antidote protein  42.03 
 
 
151 aa  57  0.00000008  Burkholderia phytofirmans PsJN  Bacteria  normal  0.314371  normal 
 
 
-
 
NC_009483  Gura_3008  XRE family plasmid maintenance system antidote protein  38.27 
 
 
104 aa  57  0.00000008  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_0642  hypothetical protein  33.33 
 
 
96 aa  57  0.00000009  Cytophaga hutchinsonii ATCC 33406  Bacteria  decreased coverage  0.000000446232  normal  0.460246 
 
 
-
 
NC_007951  Bxe_A0921  hypothetical protein  42.03 
 
 
151 aa  56.6  0.0000001  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_4027  XRE family plasmid maintenance system antidote protein  38.36 
 
 
101 aa  56.6  0.0000001  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009671  Oant_4678  XRE family plasmid maintenance system antidote protein  36.62 
 
 
98 aa  56.6  0.0000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.171358  n/a   
 
 
-
 
NC_010725  Mpop_1590  XRE family plasmid maintenance system antidote protein  35.96 
 
 
107 aa  56.2  0.0000001  Methylobacterium populi BJ001  Bacteria  normal  0.0352422  normal 
 
 
-
 
NC_008751  Dvul_1455  XRE family plasmid maintenance system antidote protein  37.97 
 
 
100 aa  56.2  0.0000002  Desulfovibrio vulgaris DP4  Bacteria  normal  0.077029  normal 
 
 
-
 
NC_007643  Rru_A1535  plasmid maintenance system antidote protein  37.18 
 
 
123 aa  55.5  0.0000003  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0393222  n/a   
 
 
-
 
NC_007643  Rru_A3068  plasmid maintenance system antidote protein  40.85 
 
 
95 aa  55.1  0.0000003  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.959159  n/a   
 
 
-
 
NC_008009  Acid345_3424  XRE family plasmid maintenance system antidote protein  38.16 
 
 
98 aa  55.1  0.0000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_010513  Xfasm12_1142  XRE family plasmid maintenance system antidote protein  37.5 
 
 
99 aa  55.5  0.0000003  Xylella fastidiosa M12  Bacteria  normal  0.570352  n/a   
 
 
-
 
NC_010725  Mpop_3935  XRE family plasmid maintenance system antidote protein  39.44 
 
 
123 aa  55.5  0.0000003  Methylobacterium populi BJ001  Bacteria  normal  normal  0.155055 
 
 
-
 
NC_010513  Xfasm12_0403  XRE family plasmid maintenance system antidote protein  37.5 
 
 
99 aa  55.5  0.0000003  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_1062  XRE family plasmid maintenance system antidote protein  38.36 
 
 
102 aa  54.3  0.0000005  Eggerthella lenta DSM 2243  Bacteria  normal  hitchhiker  0.0000765045 
 
 
-
 
NC_009943  Dole_2889  XRE family plasmid maintenance system antidote protein  32.18 
 
 
104 aa  54.7  0.0000005  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.955801  n/a   
 
 
-
 
NC_013889  TK90_0224  plasmid maintenance system antidote protein, XRE family  35.56 
 
 
99 aa  54.3  0.0000006  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.657872  normal  0.19652 
 
 
-
 
NC_008320  Shewmr7_4040  XRE family plasmid maintenance system antidote protein  35.06 
 
 
98 aa  53.9  0.0000006  Shewanella sp. MR-7  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_2469  XRE family plasmid maintenance system antidote protein  39.24 
 
 
100 aa  53.9  0.0000007  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_3083  XRE family plasmid maintenance system antidote protein  39.24 
 
 
100 aa  53.9  0.0000007  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_2693  plasmid maintenance system antidote protein, XRE family  36.36 
 
 
92 aa  53.9  0.0000007  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_3101  XRE family plasmid maintenance system antidote protein  39.24 
 
 
100 aa  53.9  0.0000007  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.768418 
 
 
-
 
NC_007964  Nham_0578  XRE family plasmid maintenance system antidote protein  30.95 
 
 
108 aa  53.5  0.0000009  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_4918  XRE family plasmid maintenance system antidote protein  34.78 
 
 
99 aa  53.5  0.0000009  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.128758 
 
 
-
 
NC_010002  Daci_1211  XRE family plasmid maintenance system antidote protein  38.03 
 
 
103 aa  53.5  0.0000009  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_00434  predicted DNA-binding transcriptional regulator  38.36 
 
 
113 aa  52.8  0.000001  Escherichia coli BL21(DE3)  Bacteria  normal  0.449816  n/a   
 
 
-
 
CP001637  EcDH1_3127  plasmid maintenance system antidote protein, XRE family  35.8 
 
 
131 aa  53.1  0.000001  Escherichia coli DH1  Bacteria  normal  0.273977  n/a   
 
 
-
 
NC_010658  SbBS512_E0418  addiction module antidote protein, HigA family  38.36 
 
 
131 aa  53.5  0.000001  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0576  addiction module antidote protein, HigA family  38.36 
 
 
131 aa  53.1  0.000001  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2319  XRE family plasmid maintenance system antidote protein  32.53 
 
 
127 aa  52.8  0.000001  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.622069 
 
 
-
 
NC_009727  CBUD_0533  virulence-associated protein I  33.33 
 
 
103 aa  52.8  0.000001  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  0.888429  n/a   
 
 
-
 
NC_009800  EcHS_A0560  addiction module antidote protein  38.36 
 
 
131 aa  53.1  0.000001  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0522  addiction module antidote protein  38.36 
 
 
131 aa  53.5  0.000001  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00439  hypothetical protein  38.36 
 
 
113 aa  52.8  0.000001  Escherichia coli BL21  Bacteria  normal  0.540311  n/a   
 
 
-
 
NC_010322  PputGB1_3643  XRE family plasmid maintenance system antidote protein  40.96 
 
 
95 aa  53.1  0.000001  Pseudomonas putida GB-1  Bacteria  normal  0.0160538  normal 
 
 
-
 
NC_010468  EcolC_3133  XRE family plasmid maintenance system antidote protein  38.36 
 
 
131 aa  53.1  0.000001  Escherichia coli ATCC 8739  Bacteria  normal  0.0484556  unclonable  0.0000000122724 
 
 
-
 
NC_007510  Bcep18194_A6433  XRE family plasmid maintenance system antidote protein  37.97 
 
 
100 aa  52.4  0.000002  Burkholderia sp. 383  Bacteria  normal  normal  0.294261 
 
 
-
 
NC_011662  Tmz1t_3858  XRE family plasmid maintenance system antidote protein  34.48 
 
 
105 aa  52.8  0.000002  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_1125  XRE family plasmid maintenance system antidote protein  36.62 
 
 
119 aa  52.8  0.000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.19415 
 
 
-
 
NC_007963  Csal_1677  XRE family plasmid maintenance system antidote protein  39.74 
 
 
93 aa  52.8  0.000002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2881  XRE family plasmid maintenance system antidote protein  35.14 
 
 
96 aa  52.8  0.000002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.516447  n/a   
 
 
-
 
NC_008686  Pden_1963  XRE family plasmid maintenance system antidote protein  30.95 
 
 
99 aa  52.4  0.000002  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.0393563 
 
 
-
 
NC_009800  EcHS_A2644  putative addiction module  36.99 
 
 
1365 aa  52.8  0.000002  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1669  addiction module antidote protein  33.33 
 
 
101 aa  52.8  0.000002  Coxiella burnetii RSA 331  Bacteria  normal  0.179147  n/a   
 
 
-
 
NC_011004  Rpal_1484  XRE family plasmid maintenance system antidote protein  29.63 
 
 
107 aa  51.6  0.000004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4148  XRE family plasmid maintenance system antidote protein  30.99 
 
 
101 aa  51.6  0.000004  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.287171  normal 
 
 
-
 
NC_007964  Nham_2852  XRE family plasmid maintenance system antidote protein  32.39 
 
 
100 aa  51.2  0.000005  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
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