170 homologs were found in PanDaTox collection
for query gene Ppha_2447 on replicon NC_011060
Organism: Pelodictyon phaeoclathratiforme BU-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011060  Ppha_2447  XRE family plasmid maintenance system antidote protein  100 
 
 
128 aa  263  5.999999999999999e-70  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.56382  n/a   
 
 
-
 
NC_013174  Jden_0750  XRE family plasmid maintenance system antidote protein  51.85 
 
 
117 aa  91.3  4e-18  Jonesia denitrificans DSM 20603  Bacteria  normal  0.236771  normal 
 
 
-
 
NC_010725  Mpop_2927  XRE family plasmid maintenance system antidote protein  53.33 
 
 
97 aa  90.9  5e-18  Methylobacterium populi BJ001  Bacteria  normal  0.225345  normal 
 
 
-
 
NC_010717  PXO_03903  addiction module antidote protein, HigA family  59.15 
 
 
96 aa  90.5  6e-18  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.433469  n/a   
 
 
-
 
NC_008576  Mmc1_2896  XRE family plasmid maintenance system antidote protein  53.95 
 
 
95 aa  90.1  9e-18  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.543418 
 
 
-
 
NC_009719  Plav_0019  XRE family plasmid maintenance system antidote protein  50 
 
 
98 aa  89  2e-17  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191318  normal  0.0141037 
 
 
-
 
NC_008789  Hhal_1672  XRE family plasmid maintenance system antidote protein  48.86 
 
 
108 aa  88.2  4e-17  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_2031  XRE family plasmid maintenance system antidote protein  48.72 
 
 
106 aa  87.8  4e-17  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.65469  n/a   
 
 
-
 
NC_007925  RPC_3187  XRE family plasmid maintenance system antidote protein  53.33 
 
 
94 aa  87.4  6e-17  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0487579  normal 
 
 
-
 
NC_008740  Maqu_3198  XRE family plasmid maintenance system antidote protein  54.29 
 
 
104 aa  87  7e-17  Marinobacter aquaeolei VT8  Bacteria  normal  0.562378  n/a   
 
 
-
 
NC_011901  Tgr7_1105  XRE family plasmid maintenance system antidote protein  50 
 
 
105 aa  85.9  2e-16  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.912318  n/a   
 
 
-
 
NC_007517  Gmet_2972  XRE family plasmid maintenance system antidote protein  48.78 
 
 
101 aa  85.9  2e-16  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_1543  XRE family plasmid maintenance system antidote protein  49.33 
 
 
118 aa  85.1  3e-16  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.167279 
 
 
-
 
NC_013174  Jden_0768  XRE family plasmid maintenance system antidote protein  52.11 
 
 
100 aa  84.7  3e-16  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_2106  XRE family plasmid maintenance system antidote protein  50.67 
 
 
93 aa  84.3  4e-16  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_013530  Xcel_0947  XRE family plasmid maintenance system antidote protein  50 
 
 
106 aa  84.3  5e-16  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_2693  plasmid maintenance system antidote protein, XRE family  49.33 
 
 
92 aa  84  7e-16  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3236  XRE family plasmid maintenance system antidote protein  50.67 
 
 
94 aa  83.6  8e-16  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.390775  normal 
 
 
-
 
NC_007517  Gmet_3001  XRE family plasmid maintenance system antidote protein  51.35 
 
 
100 aa  82.8  0.000000000000001  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.770477 
 
 
-
 
NC_006369  lpl1093  hypothetical protein  52.7 
 
 
107 aa  82  0.000000000000003  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_010681  Bphyt_3070  XRE family plasmid maintenance system antidote protein  43.96 
 
 
151 aa  81.6  0.000000000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  0.314371  normal 
 
 
-
 
NC_007951  Bxe_A0921  hypothetical protein  39.66 
 
 
151 aa  82  0.000000000000003  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_1669  XRE family plasmid maintenance system antidote protein  48.68 
 
 
101 aa  81.6  0.000000000000004  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009483  Gura_1216  XRE family plasmid maintenance system antidote protein  50 
 
 
101 aa  80.9  0.000000000000005  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_1480  XRE family plasmid maintenance system antidote protein  43.21 
 
 
102 aa  78.6  0.00000000000002  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.0221448  n/a   
 
 
-
 
NC_007484  Noc_2763  virulence-associated protein, putative  41.57 
 
 
100 aa  78.6  0.00000000000003  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_1754  virulence-associated protein, putative  40.48 
 
 
104 aa  77.4  0.00000000000006  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.0614542  n/a   
 
 
-
 
NC_013889  TK90_0224  plasmid maintenance system antidote protein, XRE family  42.53 
 
 
99 aa  77  0.00000000000009  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.657872  normal  0.19652 
 
 
-
 
NC_010803  Clim_1368  XRE family plasmid maintenance system antidote protein  40.74 
 
 
102 aa  76.3  0.0000000000001  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1407  XRE family plasmid maintenance system antidote protein  47.14 
 
 
103 aa  76.6  0.0000000000001  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.117941  n/a   
 
 
-
 
NC_007963  Csal_2881  XRE family plasmid maintenance system antidote protein  47.44 
 
 
96 aa  75.9  0.0000000000002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.516447  n/a   
 
 
-
 
NC_012560  Avin_27690  plasmid maintenance system antidote protein  48.57 
 
 
99 aa  75.5  0.0000000000002  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_0403  XRE family plasmid maintenance system antidote protein  50 
 
 
99 aa  73.9  0.0000000000006  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_1142  XRE family plasmid maintenance system antidote protein  50 
 
 
99 aa  73.9  0.0000000000006  Xylella fastidiosa M12  Bacteria  normal  0.570352  n/a   
 
 
-
 
NC_010577  XfasM23_1425  XRE family plasmid maintenance system antidote protein  46.67 
 
 
99 aa  73.9  0.0000000000006  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4370  XRE family plasmid maintenance system antidote protein  50 
 
 
106 aa  73.6  0.0000000000008  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0372671  normal  0.0360192 
 
 
-
 
NC_011060  Ppha_1377  XRE family plasmid maintenance system antidote protein  49.3 
 
 
99 aa  73.6  0.0000000000008  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0672  plasmid maintenance system antidote protein  50 
 
 
171 aa  73.6  0.0000000000009  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.15068  normal  0.669698 
 
 
-
 
NC_009485  BBta_0431  hypothetical protein  40.24 
 
 
108 aa  73.6  0.0000000000009  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.202991  normal 
 
 
-
 
NC_007413  Ava_3243  plasmid maintenance system antidote protein  43.21 
 
 
102 aa  72.8  0.000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0211861  normal 
 
 
-
 
NC_009671  Oant_4678  XRE family plasmid maintenance system antidote protein  45.71 
 
 
98 aa  73.2  0.000000000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.171358  n/a   
 
 
-
 
NC_007484  Noc_0417  XRE family transcriptional regulator  42.11 
 
 
104 aa  72.8  0.000000000002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0634  XRE family plasmid maintenance system antidote protein  42.11 
 
 
102 aa  72.4  0.000000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.757193  n/a   
 
 
-
 
NC_010002  Daci_1211  XRE family plasmid maintenance system antidote protein  35.64 
 
 
103 aa  72  0.000000000002  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3935  XRE family plasmid maintenance system antidote protein  44.05 
 
 
123 aa  72  0.000000000003  Methylobacterium populi BJ001  Bacteria  normal  normal  0.155055 
 
 
-
 
NC_013037  Dfer_4918  XRE family plasmid maintenance system antidote protein  42.25 
 
 
99 aa  71.6  0.000000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.128758 
 
 
-
 
NC_011901  Tgr7_2786  XRE family plasmid maintenance system antidote protein  44 
 
 
106 aa  71.6  0.000000000004  Thioalkalivibrio sp. HL-EbGR7  Bacteria  unclonable  0.000000094081  n/a   
 
 
-
 
NC_011901  Tgr7_0043  XRE family plasmid maintenance system antidote protein  44.16 
 
 
99 aa  71.6  0.000000000004  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1256  XRE family plasmid maintenance system antidote protein  41.38 
 
 
103 aa  71.6  0.000000000004  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.0149882 
 
 
-
 
NC_009943  Dole_2564  XRE family plasmid maintenance system antidote protein  43.37 
 
 
116 aa  71.2  0.000000000005  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.63579  n/a   
 
 
-
 
NC_010517  Mrad2831_6421  XRE family plasmid maintenance system antidote protein  43.59 
 
 
78 aa  70.9  0.000000000006  Methylobacterium radiotolerans JCM 2831  Bacteria  n/a    normal  0.953679 
 
 
-
 
NC_013173  Dbac_2571  XRE family plasmid maintenance system antidote protein  41.33 
 
 
109 aa  70.9  0.000000000006  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2019  plasmid maintenance system antidote protein  42.47 
 
 
99 aa  70.5  0.000000000007  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_0642  hypothetical protein  40.85 
 
 
96 aa  70.5  0.000000000007  Cytophaga hutchinsonii ATCC 33406  Bacteria  decreased coverage  0.000000446232  normal  0.460246 
 
 
-
 
NC_007643  Rru_A1065  plasmid maintenance system antidote protein  46.05 
 
 
101 aa  70.5  0.000000000008  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0608  XRE family plasmid maintenance system antidote protein  47.83 
 
 
98 aa  70.5  0.000000000008  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_4131  XRE family plasmid maintenance system antidote protein  40.28 
 
 
102 aa  70.1  0.000000000009  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0937778  normal  0.0702268 
 
 
-
 
NC_007643  Rru_A3068  plasmid maintenance system antidote protein  44.74 
 
 
95 aa  70.1  0.00000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.959159  n/a   
 
 
-
 
NC_007778  RPB_4148  XRE family plasmid maintenance system antidote protein  46.38 
 
 
101 aa  69.7  0.00000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.287171  normal 
 
 
-
 
NC_008254  Meso_0885  XRE family plasmid maintenance system antidote protein  42.67 
 
 
102 aa  70.1  0.00000000001  Chelativorans sp. BNC1  Bacteria  normal  0.673579  n/a   
 
 
-
 
NC_009485  BBta_0902  hypothetical protein  43.24 
 
 
199 aa  70.1  0.00000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_0276  XRE family plasmid maintenance system antidote protein  40.51 
 
 
102 aa  70.1  0.00000000001  Xanthobacter autotrophicus Py2  Bacteria  normal  0.545625  normal  0.0676813 
 
 
-
 
NC_009720  Xaut_2649  XRE family plasmid maintenance system antidote protein  40.51 
 
 
102 aa  70.1  0.00000000001  Xanthobacter autotrophicus Py2  Bacteria  normal  0.634453  normal 
 
 
-
 
NC_004578  PSPTO_0214  virulence-associated protein, putative  40.43 
 
 
101 aa  68.9  0.00000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.756652  n/a   
 
 
-
 
NC_007925  RPC_4141  XRE family plasmid maintenance system antidote protein  46.38 
 
 
101 aa  69.3  0.00000000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.267642  normal 
 
 
-
 
NC_011004  Rpal_4828  XRE family plasmid maintenance system antidote protein  46.38 
 
 
101 aa  68.9  0.00000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_1062  XRE family plasmid maintenance system antidote protein  39.13 
 
 
102 aa  69.3  0.00000000002  Eggerthella lenta DSM 2243  Bacteria  normal  hitchhiker  0.0000765045 
 
 
-
 
NC_009719  Plav_2942  XRE family plasmid maintenance system antidote protein  47.14 
 
 
104 aa  68.9  0.00000000002  Parvibaculum lavamentivorans DS-1  Bacteria  hitchhiker  0.00934275  hitchhiker  0.000711707 
 
 
-
 
NC_012850  Rleg_0834  XRE family plasmid maintenance system antidote protein  40.51 
 
 
102 aa  67.8  0.00000000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.625913  normal 
 
 
-
 
NC_007974  Rmet_4764  plasmid maintenance system antidote protein  40.91 
 
 
115 aa  67.8  0.00000000005  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.559463 
 
 
-
 
NC_011004  Rpal_3616  XRE family plasmid maintenance system antidote protein  43.06 
 
 
100 aa  67.8  0.00000000005  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.322775  n/a   
 
 
-
 
NC_007925  RPC_4756  XRE family plasmid maintenance system antidote protein  47.37 
 
 
100 aa  67.4  0.00000000006  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_1385  XRE family plasmid maintenance system antidote protein  42.68 
 
 
103 aa  67.4  0.00000000006  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2823  putative plasmid maintenance system antidote protein  36.52 
 
 
167 aa  67  0.00000000009  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_007514  Cag_0985  XRE family plasmid maintenance system antidote protein  75.68 
 
 
82 aa  66.6  0.0000000001  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_2852  XRE family plasmid maintenance system antidote protein  43.24 
 
 
100 aa  66.6  0.0000000001  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_1125  XRE family plasmid maintenance system antidote protein  50 
 
 
119 aa  66.6  0.0000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.19415 
 
 
-
 
NC_009483  Gura_0412  XRE family plasmid maintenance system antidote protein  37.36 
 
 
100 aa  66.2  0.0000000001  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_0533  virulence-associated protein I  41.89 
 
 
103 aa  66.2  0.0000000001  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  0.888429  n/a   
 
 
-
 
NC_011884  Cyan7425_1808  XRE family plasmid maintenance system antidote protein  46.67 
 
 
358 aa  66.2  0.0000000001  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_010117  COXBURSA331_A1669  addiction module antidote protein  41.89 
 
 
101 aa  66.2  0.0000000002  Coxiella burnetii RSA 331  Bacteria  normal  0.179147  n/a   
 
 
-
 
NC_010338  Caul_3225  XRE family plasmid maintenance system antidote protein  44.59 
 
 
106 aa  65.1  0.0000000003  Caulobacter sp. K31  Bacteria  normal  normal  0.114466 
 
 
-
 
NC_009943  Dole_2889  XRE family plasmid maintenance system antidote protein  34.44 
 
 
104 aa  64.7  0.0000000004  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.955801  n/a   
 
 
-
 
NC_007643  Rru_A1535  plasmid maintenance system antidote protein  40.28 
 
 
123 aa  64.3  0.0000000006  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0393222  n/a   
 
 
-
 
NC_002947  PP_1585  antidote protein, putative  41.46 
 
 
99 aa  63.9  0.0000000007  Pseudomonas putida KT2440  Bacteria  normal  normal  0.315858 
 
 
-
 
NC_007643  Rru_A2430  plasmid maintenance system antidote protein  37.97 
 
 
108 aa  63.2  0.000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.216096  n/a   
 
 
-
 
NC_008009  Acid345_3424  XRE family plasmid maintenance system antidote protein  37.5 
 
 
98 aa  62.8  0.000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_1455  XRE family plasmid maintenance system antidote protein  38 
 
 
100 aa  62.4  0.000000002  Desulfovibrio vulgaris DP4  Bacteria  normal  0.077029  normal 
 
 
-
 
NC_009483  Gura_3818  XRE family plasmid maintenance system antidote protein  38.96 
 
 
94 aa  62.4  0.000000002  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00442118  n/a   
 
 
-
 
NC_009512  Pput_4192  XRE family plasmid maintenance system antidote protein  40.24 
 
 
99 aa  62.8  0.000000002  Pseudomonas putida F1  Bacteria  normal  0.322269  normal 
 
 
-
 
NC_009621  Smed_5479  XRE family plasmid maintenance system antidote protein  38.57 
 
 
99 aa  62.4  0.000000002  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0579  XRE family plasmid maintenance system antidote protein  39.47 
 
 
101 aa  61.6  0.000000003  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3008  XRE family plasmid maintenance system antidote protein  40.85 
 
 
104 aa  61.6  0.000000004  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE1610  DNA-binding protein  34.12 
 
 
100 aa  61.2  0.000000005  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1906  XRE family plasmid maintenance system antidote protein  33.67 
 
 
100 aa  60.8  0.000000005  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.0000136892  n/a   
 
 
-
 
NC_007514  Cag_1487  XRE family plasmid maintenance system antidote protein  39.44 
 
 
103 aa  60.8  0.000000006  Chlorobium chlorochromatii CaD3  Bacteria  hitchhiker  0.000000000645872  n/a   
 
 
-
 
NC_007964  Nham_4027  XRE family plasmid maintenance system antidote protein  37.5 
 
 
101 aa  60.8  0.000000006  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_2894  addiction module antidote protein, HigA family  34.74 
 
 
119 aa  60.5  0.000000007  Gordonia bronchialis DSM 43247  Bacteria  normal  0.285023  n/a   
 
 
-
 
NC_009832  Spro_4314  XRE family plasmid maintenance system antidote protein  38.67 
 
 
107 aa  60.5  0.000000008  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2764  XRE family plasmid maintenance system antidote protein  36.99 
 
 
95 aa  60.1  0.00000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.374165  n/a   
 
 
-
 
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