107 homologs were found in PanDaTox collection
for query gene PSPTO_3475 on replicon NC_004578
Organism: Pseudomonas syringae pv. tomato str. DC3000



Page 1 of 2    << first  < prev  1  2    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004578  PSPTO_3475  potassium efflux system protein PhaF  100 
 
 
92 aa  173  6e-43  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3256  putative monovalent cation/H+ antiporter subunit F  97.83 
 
 
92 aa  171  2.9999999999999996e-42  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.111199  normal 
 
 
-
 
NC_007492  Pfl01_3314  putative monovalent cation/H+ antiporter subunit F  85.87 
 
 
92 aa  157  5e-38  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2226  putative monovalent cation/H+ antiporter subunit F  83.7 
 
 
92 aa  149  2e-35  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3514  putative monovalent cation/H+ antiporter subunit F  83.7 
 
 
92 aa  148  2e-35  Pseudomonas putida F1  Bacteria  normal  hitchhiker  0.00558279 
 
 
-
 
NC_010322  PputGB1_1849  putative monovalent cation/H+ antiporter subunit F  83.7 
 
 
92 aa  148  2e-35  Pseudomonas putida GB-1  Bacteria  normal  0.689524  normal  0.0371902 
 
 
-
 
NC_010501  PputW619_3447  putative monovalent cation/H+ antiporter subunit F  84.78 
 
 
92 aa  149  2e-35  Pseudomonas putida W619  Bacteria  normal  0.810959  normal  0.413085 
 
 
-
 
NC_008781  Pnap_1520  multiple resistance and pH regulation protein F  65.22 
 
 
92 aa  114  3e-25  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0106021  normal 
 
 
-
 
NC_008782  Ajs_2478  multiple resistance and pH regulation protein F  64.84 
 
 
93 aa  114  3e-25  Acidovorax sp. JS42  Bacteria  normal  0.648417  normal  0.0636047 
 
 
-
 
NC_011992  Dtpsy_1382  multiple resistance and pH regulation protein F  64.84 
 
 
93 aa  114  3e-25  Acidovorax ebreus TPSY  Bacteria  normal  0.393681  n/a   
 
 
-
 
NC_008752  Aave_3293  multiple resistance and pH regulation protein F  62.64 
 
 
96 aa  108  2.0000000000000002e-23  Acidovorax citrulli AAC00-1  Bacteria  normal  0.3108  normal 
 
 
-
 
NC_012791  Vapar_1601  multiple resistance and pH regulation protein F  82.09 
 
 
92 aa  108  4.0000000000000004e-23  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A1587  putative monovalent cation/H+ antiporter subunit F  59.78 
 
 
93 aa  106  1e-22  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2441  multiple resistance and pH regulation protein F  58.24 
 
 
94 aa  104  4e-22  Thauera sp. MZ1T  Bacteria  normal  0.770309  n/a   
 
 
-
 
NC_008786  Veis_3905  multiple resistance and pH regulation protein F  65.22 
 
 
92 aa  102  1e-21  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.0617372 
 
 
-
 
NC_010002  Daci_4733  multiple resistance and pH regulation protein F  64.29 
 
 
92 aa  100  5e-21  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.74985 
 
 
-
 
NC_011004  Rpal_3132  putative monovalent cation/H+ antiporter subunit F  57.14 
 
 
93 aa  97.8  4e-20  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2810  putative monovalent cation/H+ antiporter subunit F  56.47 
 
 
93 aa  97.4  5e-20  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.482202 
 
 
-
 
NC_007406  Nwi_2658  putative monovalent cation/H+ antiporter subunit F  53.26 
 
 
92 aa  97.4  7e-20  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_1006  putative monovalent cation/H+ antiporter subunit F  52.17 
 
 
92 aa  92.8  1e-18  Nitrobacter hamburgensis X14  Bacteria  normal  0.762364  n/a   
 
 
-
 
NC_012560  Avin_19570  sodium hydrogen antiporter subunitF, ShaF  50.56 
 
 
89 aa  91.7  3e-18  Azotobacter vinelandii DJ  Bacteria  normal  0.256992  n/a   
 
 
-
 
NC_009439  Pmen_1445  multiple resistance and pH regulation protein F  47.19 
 
 
89 aa  88.2  3e-17  Pseudomonas mendocina ymp  Bacteria  normal  0.0244113  normal 
 
 
-
 
NC_009050  Rsph17029_3445  putative monovalent cation/H+ antiporter subunit F  48.39 
 
 
93 aa  87  7e-17  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.735692  normal  0.139812 
 
 
-
 
NC_007520  Tcr_0059  putative monovalent cation/H+ antiporter subunit F  49.44 
 
 
89 aa  86.7  9e-17  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007494  RSP_3711  putative monovalent cation/H+ antiporter subunit F  48.39 
 
 
93 aa  86.3  1e-16  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.546429  n/a   
 
 
-
 
NC_008783  BARBAKC583_0034  putative monovalent cation/H+ antiporter subunit F  50.59 
 
 
93 aa  85.1  3e-16  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_5152  multiple resistance and pH regulation protein F  43.96 
 
 
94 aa  84.3  5e-16  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0899  multiple resistance and pH regulation protein F  46.07 
 
 
89 aa  84  6e-16  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.857013  n/a   
 
 
-
 
NC_008740  Maqu_2853  multiple resistance and pH regulation protein F  50 
 
 
89 aa  84.3  6e-16  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0578  putative monovalent cation/H+ antiporter subunit F  48.31 
 
 
89 aa  83.6  8e-16  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00573992  decreased coverage  0.00947424 
 
 
-
 
NC_011988  Avi_5264  PH Adaption potassium efflux system  47.31 
 
 
93 aa  83.6  8e-16  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_4612  multiple resistance and pH regulation protein F  42.86 
 
 
94 aa  83.6  9e-16  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0110721 
 
 
-
 
NC_009429  Rsph17025_3621  putative monovalent cation/H+ antiporter subunit F  45.16 
 
 
93 aa  83.2  0.000000000000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0308607  normal 
 
 
-
 
NC_009654  Mmwyl1_3986  putative monovalent cation/H+ antiporter subunit F  48.31 
 
 
89 aa  83.2  0.000000000000001  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_5077  multiple resistance and pH regulation protein F  42.86 
 
 
94 aa  83.2  0.000000000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.734498  normal 
 
 
-
 
NC_007347  Reut_A1682  putative monovalent cation/H+ antiporter subunit F  51.19 
 
 
90 aa  82  0.000000000000002  Ralstonia eutropha JMP134  Bacteria  normal  0.145705  n/a   
 
 
-
 
NC_008709  Ping_1354  monovalent cation/proton antiporter, pH regulation subunit F  43.82 
 
 
89 aa  80.5  0.000000000000007  Psychromonas ingrahamii 37  Bacteria  normal  0.258998  normal 
 
 
-
 
NC_007404  Tbd_0493  multisubunit Na+/H+ antiporter, subunit F  55.22 
 
 
89 aa  79.7  0.00000000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4320  putative monovalent cation/H+ antiporter subunit F  53.73 
 
 
89 aa  78.2  0.00000000000004  Pseudomonas aeruginosa PA7  Bacteria  normal  0.409592  n/a   
 
 
-
 
NC_013173  Dbac_2488  multiple resistance and pH regulation protein F  43.82 
 
 
89 aa  78.2  0.00000000000004  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_3814  putative monovalent cation/H+ antiporter subunit F  41.57 
 
 
89 aa  77.4  0.00000000000006  Colwellia psychrerythraea 34H  Bacteria  normal  0.345278  n/a   
 
 
-
 
NC_008463  PA14_50690  putative monovalent cation/H+ antiporter subunit F  53.85 
 
 
85 aa  75.5  0.0000000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.00854292 
 
 
-
 
NC_008686  Pden_1285  putative monovalent cation/H+ antiporter subunit F  55.22 
 
 
93 aa  75.5  0.0000000000002  Paracoccus denitrificans PD1222  Bacteria  normal  0.399019  normal 
 
 
-
 
NC_004311  BRA0504  putative monovalent cation/H+ antiporter subunit F  53.76 
 
 
93 aa  73.2  0.000000000001  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0439  putative monovalent cation/H+ antiporter subunit F  53.76 
 
 
93 aa  73.2  0.000000000001  Brucella ovis ATCC 25840  Bacteria  normal  0.324734  n/a   
 
 
-
 
NC_009428  Rsph17025_0228  multiple resistance and pH regulation protein F  44.71 
 
 
89 aa  72  0.000000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0106096  normal 
 
 
-
 
NC_007493  RSP_0996  pH adaption potassium efflux system, PhaF subunit  43.53 
 
 
89 aa  72  0.000000000003  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.0786377  n/a   
 
 
-
 
NC_009049  Rsph17029_2656  multiple resistance and pH regulation protein F  43.53 
 
 
89 aa  72  0.000000000003  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_1542  putative monovalent cation/H+ antiporter subunit F  35.96 
 
 
89 aa  71.2  0.000000000004  Ruegeria sp. TM1040  Bacteria  normal  normal  0.0184419 
 
 
-
 
NC_013422  Hneap_1126  multiple resistance and pH regulation protein F  41.18 
 
 
102 aa  71.6  0.000000000004  Halothiobacillus neapolitanus c2  Bacteria  hitchhiker  0.00913548  n/a   
 
 
-
 
NC_010717  PXO_04213  putative monovalent cation/H+ antiporter subunit F  38.64 
 
 
94 aa  70.9  0.000000000005  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0152  putative monovalent cation/H+ antiporter subunit F  41.86 
 
 
89 aa  69.7  0.00000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_3733  putative monovalent cation/H+ antiporter subunit F  35.96 
 
 
94 aa  70.1  0.00000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3719  multiple resistance and pH regulation protein F  38.2 
 
 
89 aa  69.3  0.00000000002  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009956  Dshi_3809  multiple resistance and pH regulation protein F  38.2 
 
 
89 aa  69.3  0.00000000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.332403 
 
 
-
 
NC_009668  Oant_3535  putative monovalent cation/H+ antiporter subunit F  56.25 
 
 
93 aa  68.6  0.00000000003  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.480103  n/a   
 
 
-
 
NC_007925  RPC_3853  putative monovalent cation/H+ antiporter subunit F  39.33 
 
 
89 aa  67  0.00000000008  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_0701  multiple resistance and pH regulation protein F  41.56 
 
 
89 aa  65.1  0.0000000003  Paracoccus denitrificans PD1222  Bacteria  normal  0.390785  normal 
 
 
-
 
NC_007958  RPD_0672  putative monovalent cation/H+ antiporter subunit F  40.7 
 
 
89 aa  64.3  0.0000000005  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0733  multiple resistance and pH regulation protein F  40 
 
 
118 aa  63.9  0.0000000008  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.130974  normal 
 
 
-
 
NC_011830  Dhaf_1158  multiple resistance and pH regulation protein F  39.29 
 
 
98 aa  61.6  0.000000004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1104  multiple resistance and pH regulation protein F  43.75 
 
 
89 aa  60.8  0.000000007  Thauera sp. MZ1T  Bacteria  normal  0.0102977  n/a   
 
 
-
 
NC_012793  GWCH70_2869  multiple resistance and pH regulation protein F  40.24 
 
 
93 aa  59.3  0.00000002  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2095  multiple resistance and pH regulation protein F  36.47 
 
 
90 aa  57.4  0.00000007  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.801708  normal  0.210838 
 
 
-
 
NC_013926  Aboo_0385  multiple resistance and pH regulation protein F  39.51 
 
 
88 aa  55.1  0.0000003  Aciduliprofundum boonei T469  Archaea  normal  0.0828098  n/a   
 
 
-
 
NC_009523  RoseRS_2097  multiple resistance and pH regulation protein F  32.5 
 
 
87 aa  54.7  0.0000005  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3690  multiple resistance and pH regulation protein F  38.14 
 
 
107 aa  52.4  0.000002  Jannaschia sp. CCS1  Bacteria  normal  normal  0.973299 
 
 
-
 
NC_002976  SERP0286  putative monovalent cation/H+ antiporter subunit F  36.59 
 
 
100 aa  51.2  0.000005  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_0982  multiple resistance and pH regulation protein F  31.4 
 
 
90 aa  50.8  0.000006  Chlorobium limicola DSM 245  Bacteria  normal  0.739743  n/a   
 
 
-
 
NC_008254  Meso_0869  putative monovalent cation/H+ antiporter subunit F  38.24 
 
 
111 aa  50.4  0.000008  Chelativorans sp. BNC1  Bacteria  normal  0.0662572  n/a   
 
 
-
 
NC_009487  SaurJH9_0650  putative monovalent cation/H+ antiporter subunit F  37.8 
 
 
100 aa  50.4  0.000008  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_0665  putative monovalent cation/H+ antiporter subunit F  37.8 
 
 
100 aa  50.4  0.000008  Staphylococcus aureus subsp. aureus JH1  Bacteria  hitchhiker  0.000841525  n/a   
 
 
-
 
NC_009767  Rcas_1773  multiple resistance and pH regulation protein F  32.5 
 
 
87 aa  50.4  0.000009  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_3223  putative monovalent cation/H+ antiporter subunit F  32.56 
 
 
91 aa  50.1  0.00001  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_013743  Htur_2714  multiple resistance and pH regulation protein F  30.77 
 
 
99 aa  50.1  0.00001  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_010831  Cphamn1_0079  multiple resistance and pH regulation protein F  29.89 
 
 
91 aa  49.7  0.00001  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_0099  multiple resistance and pH regulation protein F  30.59 
 
 
90 aa  49.7  0.00001  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1005  putative monovalent cation/H+ antiporter subunit F  36 
 
 
117 aa  50.1  0.00001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  hitchhiker  0.00000446715  normal 
 
 
-
 
NC_008942  Mlab_0949  putative monovalent cation/H+ antiporter subunit F  35.37 
 
 
86 aa  49.7  0.00002  Methanocorpusculum labreanum Z  Archaea  normal  0.0187747  normal  0.214865 
 
 
-
 
NC_013926  Aboo_0665  multiple resistance and pH regulation protein F  37.88 
 
 
85 aa  49.3  0.00002  Aciduliprofundum boonei T469  Archaea  normal  n/a   
 
 
-
 
NC_007955  Mbur_0137  putative monovalent cation/H+ antiporter subunit F  32.53 
 
 
88 aa  48.1  0.00004  Methanococcoides burtonii DSM 6242  Archaea  normal  0.911502  n/a   
 
 
-
 
NC_009636  Smed_0612  putative monovalent cation/H+ antiporter subunit F  37.5 
 
 
128 aa  47.4  0.00007  Sinorhizobium medicae WSM419  Bacteria  normal  0.716984  normal 
 
 
-
 
NC_007796  Mhun_2580  putative monovalent cation/H+ antiporter subunit F  32.89 
 
 
85 aa  47  0.00009  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_008740  Maqu_2860  multiple resistance and pH regulation protein F  34.48 
 
 
90 aa  46.6  0.0001  Marinobacter aquaeolei VT8  Bacteria  normal  0.139125  n/a   
 
 
-
 
NC_011369  Rleg2_0879  putative monovalent cation/H+ antiporter subunit F  36.23 
 
 
116 aa  46.6  0.0001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  hitchhiker  0.00982664  normal 
 
 
-
 
NC_013521  Sked_26970  multisubunit Na+/H+ antiporter, MnhF subunit  30.12 
 
 
85 aa  46.2  0.0001  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.44503 
 
 
-
 
NC_002939  GSU2339  putative monovalent cation/H+ antiporter subunit F  33.33 
 
 
91 aa  46.2  0.0002  Geobacter sulfurreducens PCA  Bacteria  normal  0.962701  n/a   
 
 
-
 
NC_013441  Gbro_0667  multiple resistance and pH regulation protein F  39.19 
 
 
87 aa  45.8  0.0002  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013158  Huta_0565  multiple resistance and pH regulation protein F  25 
 
 
96 aa  45.4  0.0003  Halorhabdus utahensis DSM 12940  Archaea  normal  0.4041  n/a   
 
 
-
 
NC_014158  Tpau_3718  multiple resistance and pH regulation protein F  34.67 
 
 
99 aa  45.1  0.0003  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_1125  putative monovalent cation/H+ antiporter subunit F  33.33 
 
 
103 aa  45.1  0.0004  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000095206  n/a   
 
 
-
 
NC_013235  Namu_3946  multiple resistance and pH regulation protein F  34.72 
 
 
86 aa  43.9  0.0008  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.109243 
 
 
-
 
NC_002976  SERP0533  putative monovalent cation/H+ antiporter subunit F  34.09 
 
 
97 aa  43.1  0.001  Staphylococcus epidermidis RP62A  Bacteria  normal  0.567164  n/a   
 
 
-
 
NC_009487  SaurJH9_0947  putative monovalent cation/H+ antiporter subunit F  35.9 
 
 
97 aa  42.7  0.001  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_0966  putative monovalent cation/H+ antiporter subunit F  35.9 
 
 
97 aa  42.7  0.001  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.122062  n/a   
 
 
-
 
NC_012029  Hlac_0839  putative monovalent cation/H+ antiporter subunit F  34.78 
 
 
101 aa  43.5  0.001  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  normal 
 
 
-
 
NC_008576  Mmc1_2215  multiple resistance and pH regulation protein F  29.41 
 
 
86 aa  42.7  0.002  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.0688335 
 
 
-
 
NC_012029  Hlac_0488  multiple resistance and pH regulation protein F  27.27 
 
 
97 aa  42.4  0.002  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  normal  0.675094 
 
 
-
 
NC_013169  Ksed_05190  multisubunit Na+/H+ antiporter, MnhF subunit  31.08 
 
 
96 aa  42.7  0.002  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_1733  multiple resistance and pH regulation protein F  28.92 
 
 
85 aa  41.6  0.004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
Page 1 of 2    << first  < prev  1  2    next >  last >>