126 homologs were found in PanDaTox collection
for query gene Smed_0612 on replicon NC_009636
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009636  Smed_0612  putative monovalent cation/H+ antiporter subunit F  100 
 
 
128 aa  239  7e-63  Sinorhizobium medicae WSM419  Bacteria  normal  0.716984  normal 
 
 
-
 
NC_012850  Rleg_1005  putative monovalent cation/H+ antiporter subunit F  69.77 
 
 
117 aa  115  1.9999999999999998e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  hitchhiker  0.00000446715  normal 
 
 
-
 
NC_011369  Rleg2_0879  putative monovalent cation/H+ antiporter subunit F  60.58 
 
 
116 aa  114  3e-25  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  hitchhiker  0.00982664  normal 
 
 
-
 
NC_008254  Meso_0869  putative monovalent cation/H+ antiporter subunit F  71.79 
 
 
111 aa  109  1.0000000000000001e-23  Chelativorans sp. BNC1  Bacteria  normal  0.0662572  n/a   
 
 
-
 
NC_011989  Avi_1279  Na+/H+ antiporter  55.34 
 
 
137 aa  104  5e-22  Agrobacterium vitis S4  Bacteria  normal  0.981373  n/a   
 
 
-
 
NC_008740  Maqu_2860  multiple resistance and pH regulation protein F  41.98 
 
 
90 aa  70.5  0.000000000007  Marinobacter aquaeolei VT8  Bacteria  normal  0.139125  n/a   
 
 
-
 
NC_007802  Jann_3690  multiple resistance and pH regulation protein F  34.96 
 
 
107 aa  69.3  0.00000000002  Jannaschia sp. CCS1  Bacteria  normal  normal  0.973299 
 
 
-
 
NC_009952  Dshi_0733  multiple resistance and pH regulation protein F  43.53 
 
 
118 aa  68.6  0.00000000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.130974  normal 
 
 
-
 
NC_009456  VC0395_1125  putative monovalent cation/H+ antiporter subunit F  52 
 
 
103 aa  67  0.00000000008  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000095206  n/a   
 
 
-
 
NC_013946  Mrub_0865  multiple resistance and pH regulation protein F  45.78 
 
 
88 aa  66.6  0.0000000001  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.717084 
 
 
-
 
NC_010725  Mpop_5152  multiple resistance and pH regulation protein F  44.32 
 
 
94 aa  66.2  0.0000000001  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_2095  multiple resistance and pH regulation protein F  37.04 
 
 
90 aa  65.9  0.0000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.801708  normal  0.210838 
 
 
-
 
NC_013457  VEA_000414  Na(+) H(+) antiporter subunit F  49.32 
 
 
92 aa  65.5  0.0000000002  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_5077  multiple resistance and pH regulation protein F  44.32 
 
 
94 aa  65.5  0.0000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.734498  normal 
 
 
-
 
NC_010172  Mext_4612  multiple resistance and pH regulation protein F  43.18 
 
 
94 aa  65.1  0.0000000003  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0110721 
 
 
-
 
NC_007778  RPB_0152  putative monovalent cation/H+ antiporter subunit F  42.7 
 
 
89 aa  64.3  0.0000000005  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2097  multiple resistance and pH regulation protein F  44.3 
 
 
87 aa  64.3  0.0000000005  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_0753  multiple resistance and pH regulation protein F  45.33 
 
 
91 aa  63.9  0.0000000007  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0206212  normal 
 
 
-
 
NC_002939  GSU2339  putative monovalent cation/H+ antiporter subunit F  47.3 
 
 
91 aa  63.5  0.0000000009  Geobacter sulfurreducens PCA  Bacteria  normal  0.962701  n/a   
 
 
-
 
NC_008789  Hhal_2030  multiple resistance and pH regulation protein F  38.37 
 
 
90 aa  63.5  0.0000000009  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_3223  putative monovalent cation/H+ antiporter subunit F  40.48 
 
 
91 aa  62.4  0.000000002  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_0405  hypothetical protein  46.58 
 
 
100 aa  62  0.000000003  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1770  Na(+)/H(+) antiporter subunit F  46.58 
 
 
100 aa  62  0.000000003  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2441  multiple resistance and pH regulation protein F  40 
 
 
94 aa  62  0.000000003  Thauera sp. MZ1T  Bacteria  normal  0.770309  n/a   
 
 
-
 
NC_013422  Hneap_1126  multiple resistance and pH regulation protein F  37.78 
 
 
102 aa  61.2  0.000000004  Halothiobacillus neapolitanus c2  Bacteria  hitchhiker  0.00913548  n/a   
 
 
-
 
NC_011901  Tgr7_2523  multiple resistance and pH regulation protein F  44.62 
 
 
91 aa  61.2  0.000000005  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3853  putative monovalent cation/H+ antiporter subunit F  43.68 
 
 
89 aa  60.5  0.000000009  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_0059  putative monovalent cation/H+ antiporter subunit F  39.53 
 
 
89 aa  60.1  0.00000001  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_2658  putative monovalent cation/H+ antiporter subunit F  42.68 
 
 
92 aa  58.9  0.00000003  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_2869  multiple resistance and pH regulation protein F  33.33 
 
 
93 aa  58.5  0.00000003  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_3445  putative monovalent cation/H+ antiporter subunit F  39.33 
 
 
93 aa  57.4  0.00000007  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.735692  normal  0.139812 
 
 
-
 
NC_004578  PSPTO_3475  potassium efflux system protein PhaF  35.87 
 
 
92 aa  56.2  0.0000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3256  putative monovalent cation/H+ antiporter subunit F  36.96 
 
 
92 aa  56.6  0.0000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.111199  normal 
 
 
-
 
NC_007492  Pfl01_3314  putative monovalent cation/H+ antiporter subunit F  37.89 
 
 
92 aa  56.6  0.0000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_1520  multiple resistance and pH regulation protein F  38.95 
 
 
92 aa  56.2  0.0000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0106021  normal 
 
 
-
 
NC_008783  BARBAKC583_0034  putative monovalent cation/H+ antiporter subunit F  37.78 
 
 
93 aa  56.6  0.0000001  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_013743  Htur_2714  multiple resistance and pH regulation protein F  36.14 
 
 
99 aa  56.6  0.0000001  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_012029  Hlac_0488  multiple resistance and pH regulation protein F  41.03 
 
 
97 aa  56.2  0.0000001  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  normal  0.675094 
 
 
-
 
NC_007494  RSP_3711  putative monovalent cation/H+ antiporter subunit F  38.2 
 
 
93 aa  55.5  0.0000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.546429  n/a   
 
 
-
 
NC_010803  Clim_0982  multiple resistance and pH regulation protein F  39.74 
 
 
90 aa  55.5  0.0000002  Chlorobium limicola DSM 245  Bacteria  normal  0.739743  n/a   
 
 
-
 
NC_007614  Nmul_A1587  putative monovalent cation/H+ antiporter subunit F  36.26 
 
 
93 aa  55.1  0.0000003  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_013926  Aboo_0665  multiple resistance and pH regulation protein F  36.62 
 
 
85 aa  55.1  0.0000003  Aciduliprofundum boonei T469  Archaea  normal  n/a   
 
 
-
 
NC_013173  Dbac_2488  multiple resistance and pH regulation protein F  33.72 
 
 
89 aa  55.1  0.0000003  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0099  multiple resistance and pH regulation protein F  33.33 
 
 
90 aa  55.5  0.0000003  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_013926  Aboo_0385  multiple resistance and pH regulation protein F  36.62 
 
 
88 aa  54.7  0.0000004  Aciduliprofundum boonei T469  Archaea  normal  0.0828098  n/a   
 
 
-
 
NC_009429  Rsph17025_3621  putative monovalent cation/H+ antiporter subunit F  34.88 
 
 
93 aa  54.7  0.0000004  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0308607  normal 
 
 
-
 
NC_011071  Smal_3733  putative monovalent cation/H+ antiporter subunit F  30.85 
 
 
94 aa  54.7  0.0000004  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0996  pH adaption potassium efflux system, PhaF subunit  38.67 
 
 
89 aa  54.3  0.0000005  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.0786377  n/a   
 
 
-
 
NC_008740  Maqu_2853  multiple resistance and pH regulation protein F  36.78 
 
 
89 aa  54.3  0.0000005  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2656  multiple resistance and pH regulation protein F  38.67 
 
 
89 aa  54.3  0.0000005  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_013158  Huta_0565  multiple resistance and pH regulation protein F  35.63 
 
 
96 aa  53.9  0.0000006  Halorhabdus utahensis DSM 12940  Archaea  normal  0.4041  n/a   
 
 
-
 
NC_011830  Dhaf_1158  multiple resistance and pH regulation protein F  37.78 
 
 
98 aa  53.9  0.0000007  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0899  multiple resistance and pH regulation protein F  34.88 
 
 
89 aa  53.1  0.000001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.857013  n/a   
 
 
-
 
NC_007964  Nham_1006  putative monovalent cation/H+ antiporter subunit F  40.24 
 
 
92 aa  53.1  0.000001  Nitrobacter hamburgensis X14  Bacteria  normal  0.762364  n/a   
 
 
-
 
NC_010831  Cphamn1_0079  multiple resistance and pH regulation protein F  36.49 
 
 
91 aa  53.5  0.000001  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_1108  multiple resistance and pH regulation protein F  48.39 
 
 
139 aa  53.5  0.000001  Thauera sp. MZ1T  Bacteria  normal  0.269645  n/a   
 
 
-
 
NC_008686  Pden_0701  multiple resistance and pH regulation protein F  39.13 
 
 
89 aa  52.8  0.000002  Paracoccus denitrificans PD1222  Bacteria  normal  0.390785  normal 
 
 
-
 
NC_008752  Aave_3293  multiple resistance and pH regulation protein F  35.11 
 
 
96 aa  52.4  0.000002  Acidovorax citrulli AAC00-1  Bacteria  normal  0.3108  normal 
 
 
-
 
NC_013757  Gobs_2932  multiple resistance and pH regulation protein F  46.88 
 
 
86 aa  52.8  0.000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_3814  putative monovalent cation/H+ antiporter subunit F  33.72 
 
 
89 aa  52  0.000003  Colwellia psychrerythraea 34H  Bacteria  normal  0.345278  n/a   
 
 
-
 
NC_009767  Rcas_1773  multiple resistance and pH regulation protein F  44.16 
 
 
87 aa  52  0.000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009956  Dshi_3809  multiple resistance and pH regulation protein F  41.18 
 
 
89 aa  52  0.000003  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.332403 
 
 
-
 
NC_010717  PXO_04213  putative monovalent cation/H+ antiporter subunit F  33.33 
 
 
94 aa  51.6  0.000004  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0228  multiple resistance and pH regulation protein F  37.33 
 
 
89 aa  51.2  0.000005  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0106096  normal 
 
 
-
 
NC_009636  Smed_2810  putative monovalent cation/H+ antiporter subunit F  36.14 
 
 
93 aa  51.2  0.000005  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.482202 
 
 
-
 
NC_008782  Ajs_2478  multiple resistance and pH regulation protein F  35.16 
 
 
93 aa  50.8  0.000006  Acidovorax sp. JS42  Bacteria  normal  0.648417  normal  0.0636047 
 
 
-
 
NC_011992  Dtpsy_1382  multiple resistance and pH regulation protein F  35.16 
 
 
93 aa  50.8  0.000006  Acidovorax ebreus TPSY  Bacteria  normal  0.393681  n/a   
 
 
-
 
NC_007498  Pcar_2617  hypothetical protein  46.15 
 
 
90 aa  50.8  0.000007  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0578  putative monovalent cation/H+ antiporter subunit F  34.88 
 
 
89 aa  50.4  0.000007  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00573992  decreased coverage  0.00947424 
 
 
-
 
NC_007802  Jann_3719  multiple resistance and pH regulation protein F  39.13 
 
 
89 aa  50.4  0.000008  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0672  putative monovalent cation/H+ antiporter subunit F  40 
 
 
89 aa  50.4  0.000009  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_3986  putative monovalent cation/H+ antiporter subunit F  34.21 
 
 
89 aa  50.4  0.000009  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1682  putative monovalent cation/H+ antiporter subunit F  39.74 
 
 
90 aa  50.1  0.00001  Ralstonia eutropha JMP134  Bacteria  normal  0.145705  n/a   
 
 
-
 
NC_008044  TM1040_1542  putative monovalent cation/H+ antiporter subunit F  33.78 
 
 
89 aa  49.7  0.00001  Ruegeria sp. TM1040  Bacteria  normal  normal  0.0184419 
 
 
-
 
NC_009718  Fnod_1747  multiple resistance and pH regulation protein F  35.14 
 
 
95 aa  49.7  0.00001  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3132  putative monovalent cation/H+ antiporter subunit F  42.65 
 
 
93 aa  50.1  0.00001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_3718  multiple resistance and pH regulation protein F  42.25 
 
 
99 aa  49.3  0.00002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_3447  putative monovalent cation/H+ antiporter subunit F  36.59 
 
 
92 aa  48.9  0.00002  Pseudomonas putida W619  Bacteria  normal  0.810959  normal  0.413085 
 
 
-
 
NC_011988  Avi_5264  PH Adaption potassium efflux system  34.41 
 
 
93 aa  48.9  0.00002  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_19570  sodium hydrogen antiporter subunitF, ShaF  34.18 
 
 
89 aa  49.3  0.00002  Azotobacter vinelandii DJ  Bacteria  normal  0.256992  n/a   
 
 
-
 
NC_013174  Jden_1917  multiple resistance and pH regulation protein F  49.28 
 
 
85 aa  47.8  0.00005  Jonesia denitrificans DSM 20603  Bacteria  normal  0.851543  normal 
 
 
-
 
NC_009656  PSPA7_4320  putative monovalent cation/H+ antiporter subunit F  40.98 
 
 
89 aa  47.4  0.00006  Pseudomonas aeruginosa PA7  Bacteria  normal  0.409592  n/a   
 
 
-
 
NC_008576  Mmc1_2215  multiple resistance and pH regulation protein F  37.31 
 
 
86 aa  47  0.00008  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.0688335 
 
 
-
 
NC_009439  Pmen_1445  multiple resistance and pH regulation protein F  35.37 
 
 
89 aa  47.4  0.00008  Pseudomonas mendocina ymp  Bacteria  normal  0.0244113  normal 
 
 
-
 
NC_007404  Tbd_0493  multisubunit Na+/H+ antiporter, subunit F  36.07 
 
 
89 aa  47  0.00009  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_1354  monovalent cation/proton antiporter, pH regulation subunit F  32.53 
 
 
89 aa  47  0.00009  Psychromonas ingrahamii 37  Bacteria  normal  0.258998  normal 
 
 
-
 
NC_002947  PP_2226  putative monovalent cation/H+ antiporter subunit F  35.37 
 
 
92 aa  46.6  0.0001  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_007955  Mbur_0137  putative monovalent cation/H+ antiporter subunit F  22.67 
 
 
88 aa  46.6  0.0001  Methanococcoides burtonii DSM 6242  Archaea  normal  0.911502  n/a   
 
 
-
 
NC_013521  Sked_26970  multisubunit Na+/H+ antiporter, MnhF subunit  37.35 
 
 
85 aa  46.2  0.0001  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.44503 
 
 
-
 
NC_009616  Tmel_1211  putative monovalent cation/H+ antiporter subunit F  42.25 
 
 
85 aa  47  0.0001  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_1733  multiple resistance and pH regulation protein F  36 
 
 
85 aa  46.6  0.0001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3514  putative monovalent cation/H+ antiporter subunit F  35.37 
 
 
92 aa  45.8  0.0002  Pseudomonas putida F1  Bacteria  normal  hitchhiker  0.00558279 
 
 
-
 
NC_010322  PputGB1_1849  putative monovalent cation/H+ antiporter subunit F  35.37 
 
 
92 aa  45.8  0.0002  Pseudomonas putida GB-1  Bacteria  normal  0.689524  normal  0.0371902 
 
 
-
 
NC_013169  Ksed_05190  multisubunit Na+/H+ antiporter, MnhF subunit  34.72 
 
 
96 aa  45.1  0.0004  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_3536  multiple resistance and pH regulation protein F  41.43 
 
 
88 aa  45.1  0.0004  Haliangium ochraceum DSM 14365  Bacteria  normal  0.155575  normal  0.403499 
 
 
-
 
NC_010003  Pmob_0896  multiple resistance and pH regulation protein F  32.79 
 
 
65 aa  44.7  0.0004  Petrotoga mobilis SJ95  Bacteria  normal  0.297824  n/a   
 
 
-
 
NC_012669  Bcav_3814  multiple resistance and pH regulation protein F  30.34 
 
 
117 aa  44.7  0.0004  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_50690  putative monovalent cation/H+ antiporter subunit F  38.98 
 
 
85 aa  44.3  0.0005  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.00854292 
 
 
-
 
NC_008786  Veis_3905  multiple resistance and pH regulation protein F  35.23 
 
 
92 aa  44.3  0.0005  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.0617372 
 
 
-
 
NC_011886  Achl_3656  hypothetical protein  37.8 
 
 
92 aa  44.3  0.0005  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
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