121 homologs were found in PanDaTox collection
for query gene Namu_5411 on replicon NC_013235
Organism: Nakamurella multipartita DSM 44233



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013235  Namu_5411  single-stranded nucleic acid binding R3H domain protein  100 
 
 
187 aa  365  1e-100  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_39760  predicted RNA-binding protein  68.63 
 
 
178 aa  201  6e-51  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0917166  normal 
 
 
-
 
NC_014158  Tpau_4239  single-stranded nucleic acid binding R3H domain protein  58.06 
 
 
179 aa  193  1e-48  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_5092  single-stranded nucleic acid binding R3H domain protein  67.33 
 
 
213 aa  191  4e-48  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_9052  single-stranded nucleic acid binding R3H domain protein  68.49 
 
 
192 aa  184  9e-46  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0131851  normal  0.817488 
 
 
-
 
NC_008699  Noca_4696  single-stranded nucleic acid binding R3H domain-containing protein  62.26 
 
 
192 aa  178  4e-44  Nocardioides sp. JS614  Bacteria  normal  0.19129  n/a   
 
 
-
 
NC_009921  Franean1_7337  single-stranded nucleic acid binding R3H domain-containing protein  60.96 
 
 
197 aa  175  3e-43  Frankia sp. EAN1pec  Bacteria  normal  normal  0.65534 
 
 
-
 
NC_012669  Bcav_4221  single-stranded nucleic acid binding R3H domain protein  62.26 
 
 
174 aa  171  7.999999999999999e-42  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.185264  normal 
 
 
-
 
NC_007333  Tfu_3113  single-stranded nucleic acid binding R3H  58.13 
 
 
179 aa  167  6e-41  Thermobifida fusca YX  Bacteria  normal  0.167543  n/a   
 
 
-
 
NC_008578  Acel_2157  single-stranded nucleic acid binding R3H domain-containing protein  53.4 
 
 
199 aa  166  2e-40  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_4544  single-stranded nucleic acid binding R3H  53.23 
 
 
184 aa  165  4e-40  Frankia sp. CcI3  Bacteria  normal  0.837562  normal 
 
 
-
 
NC_014165  Tbis_3592  single-stranded nucleic acid binding R3H domain-containing protein  62.59 
 
 
164 aa  165  4e-40  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_3726  single-stranded nucleic acid binding R3H domain protein  62 
 
 
170 aa  164  5e-40  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00400733 
 
 
-
 
NC_014210  Ndas_4864  single-stranded nucleic acid binding R3H domain protein  59.21 
 
 
162 aa  164  6.9999999999999995e-40  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0104759  hitchhiker  0.00517624 
 
 
-
 
NC_013093  Amir_7096  single-stranded nucleic acid binding R3H domain protein  70.13 
 
 
183 aa  163  1.0000000000000001e-39  Actinosynnema mirum DSM 43827  Bacteria  normal  0.167339  n/a   
 
 
-
 
NC_009565  TBFG_13955  hypothetical protein  65.56 
 
 
187 aa  162  2.0000000000000002e-39  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_4860  single-stranded nucleic acid binding R3H domain protein  66.67 
 
 
182 aa  162  2.0000000000000002e-39  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_3375  single-stranded nucleic acid binding R3H domain protein  58.67 
 
 
173 aa  161  6e-39  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_38020  predicted RNA-binding protein  55.06 
 
 
174 aa  156  2e-37  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_27000  predicted RNA-binding protein  55.83 
 
 
169 aa  154  7e-37  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_5107  single-stranded nucleic acid binding R3H domain-containing protein  46.39 
 
 
195 aa  154  8e-37  Salinispora arenicola CNS-205  Bacteria  normal  unclonable  0.000000018818 
 
 
-
 
NC_013174  Jden_2554  single-stranded nucleic acid binding R3H domain protein  58.11 
 
 
166 aa  153  1e-36  Jonesia denitrificans DSM 20603  Bacteria  hitchhiker  0.000217074  normal  0.328079 
 
 
-
 
NC_013510  Tcur_4981  single-stranded nucleic acid binding R3H domain protein  62.59 
 
 
161 aa  153  1e-36  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_4589  single-stranded nucleic acid binding R3H domain-containing protein  50.59 
 
 
195 aa  153  2e-36  Salinispora tropica CNB-440  Bacteria  normal  0.0441693  hitchhiker  0.000461886 
 
 
-
 
NC_013595  Sros_9386  spoIIIJ-associated protein  64.63 
 
 
167 aa  145  3e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  0.866356  normal 
 
 
-
 
NC_008726  Mvan_6074  single-stranded nucleic acid binding R3H domain-containing protein  60.92 
 
 
191 aa  144  6e-34  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.154892  normal  0.234461 
 
 
-
 
NC_009338  Mflv_0832  single-stranded nucleic acid binding R3H domain-containing protein  61.08 
 
 
205 aa  137  1e-31  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.874633 
 
 
-
 
NC_013947  Snas_6483  single-stranded nucleic acid binding R3H domain-containing protein  53.64 
 
 
176 aa  134  5e-31  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.0896384 
 
 
-
 
NC_013721  HMPREF0424_0050  R3H domain protein  46.98 
 
 
184 aa  134  6.0000000000000005e-31  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_008146  Mmcs_5409  single-stranded nucleic acid binding R3H  59.56 
 
 
181 aa  133  9.999999999999999e-31  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0004  single-stranded nucleic acid binding R3H domain-containing protein  59.56 
 
 
181 aa  133  9.999999999999999e-31  Mycobacterium sp. KMS  Bacteria  normal  0.417011  normal  0.115492 
 
 
-
 
NC_009077  Mjls_5785  single-stranded nucleic acid binding R3H domain-containing protein  59.56 
 
 
181 aa  133  9.999999999999999e-31  Mycobacterium sp. JLS  Bacteria  normal  normal  0.0189196 
 
 
-
 
NC_010816  BLD_1440  hypothetical protein  47.65 
 
 
177 aa  132  3e-30  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_4509  single-stranded nucleic acid binding R3H domain protein  51.81 
 
 
198 aa  130  1.0000000000000001e-29  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0266628 
 
 
-
 
NC_012803  Mlut_23440  predicted RNA-binding protein  52.7 
 
 
194 aa  130  1.0000000000000001e-29  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_31940  predicted RNA-binding protein  56.16 
 
 
232 aa  120  9.999999999999999e-27  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3933  single-stranded nucleic acid binding R3H domain protein  54.05 
 
 
188 aa  117  7e-26  Arthrobacter chlorophenolicus A6  Bacteria  n/a    decreased coverage  0.0000000000000105955 
 
 
-
 
NC_008541  Arth_4168  single-stranded nucleic acid binding R3H domain-containing protein  47.62 
 
 
188 aa  113  1.0000000000000001e-24  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3942  single-stranded nucleic acid binding R3H domain-containing protein  33.74 
 
 
276 aa  106  2e-22  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5636  jag protein  35.85 
 
 
205 aa  99.8  2e-20  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_4958  single-stranded nucleic acid binding R3H domain protein  38.19 
 
 
212 aa  100  2e-20  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000000000279065  n/a   
 
 
-
 
NC_012793  GWCH70_3430  single-stranded nucleic acid binding R3H domain protein  33.54 
 
 
207 aa  97.8  8e-20  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000000104971  n/a   
 
 
-
 
NC_011772  BCG9842_B5323  jag protein  36.25 
 
 
205 aa  97.8  9e-20  Bacillus cereus G9842  Bacteria  normal  normal  0.122987 
 
 
-
 
NC_011658  BCAH187_A5672  jag protein  35.85 
 
 
205 aa  97.1  1e-19  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5612  jag protein  36.25 
 
 
205 aa  97.4  1e-19  Bacillus cereus B4264  Bacteria  normal  0.619797  n/a   
 
 
-
 
NC_009674  Bcer98_4025  single-stranded nucleic acid binding R3H domain-containing protein  34.43 
 
 
205 aa  96.3  2e-19  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_5166  jag protein (SpoIIIJ-associated protein)  35.85 
 
 
205 aa  95.9  3e-19  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5182  Jag protein (SpoIIIJ-associated protein)  35.85 
 
 
205 aa  95.9  3e-19  Bacillus cereus E33L  Bacteria  normal  0.0241441  n/a   
 
 
-
 
NC_011773  BCAH820_5595  jag protein  35.85 
 
 
205 aa  95.9  3e-19  Bacillus cereus AH820  Bacteria  n/a    normal  0.303637 
 
 
-
 
NC_005945  BAS5338  jag protein  35.85 
 
 
205 aa  95.5  4e-19  Bacillus anthracis str. Sterne  Bacteria  normal  0.869883  n/a   
 
 
-
 
NC_007530  GBAA_5735  jag protein  35.85 
 
 
205 aa  95.5  4e-19  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5278  single-stranded nucleic acid binding R3H domain-containing protein  35.85 
 
 
205 aa  95.5  4e-19  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_3487  single-stranded nucleic acid binding R3H domain protein  36.36 
 
 
210 aa  95.5  4e-19  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_2148  single-stranded nucleic acid binding R3H domain protein  35.4 
 
 
206 aa  94.7  7e-19  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2410  single-stranded nucleic acid binding R3H domain-containing protein  35.17 
 
 
206 aa  92  4e-18  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.0000733307  n/a   
 
 
-
 
NC_010718  Nther_2931  single-stranded nucleic acid binding R3H domain protein  33.54 
 
 
209 aa  91.7  5e-18  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.000538907  normal 
 
 
-
 
NC_013216  Dtox_4366  single-stranded nucleic acid binding R3H domain protein  36.65 
 
 
206 aa  92  5e-18  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_2520  single-stranded nucleic acid binding R3H  37.86 
 
 
206 aa  90.9  9e-18  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.885926  hitchhiker  0.000525149 
 
 
-
 
NC_010424  Daud_2234  single-stranded nucleic acid binding R3H domain-containing protein  35.4 
 
 
206 aa  90.9  9e-18  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2670  SpoIIIJ-associated protein  33.33 
 
 
207 aa  90.9  1e-17  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0607  single-stranded nucleic acid binding R3H domain-containing protein  29.59 
 
 
217 aa  89.7  2e-17  Petrotoga mobilis SJ95  Bacteria  hitchhiker  0.00000089602  n/a   
 
 
-
 
NC_011899  Hore_23570  single-stranded nucleic acid binding R3H domain protein  33.54 
 
 
214 aa  89  4e-17  Halothermothrix orenii H 168  Bacteria  normal  0.10216  n/a   
 
 
-
 
NC_008261  CPF_2993  R3H domain-containing protein  33.33 
 
 
207 aa  88.6  5e-17  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_3325  single-stranded nucleic acid binding R3H domain-containing protein  33.54 
 
 
206 aa  86.7  2e-16  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0161391  n/a   
 
 
-
 
NC_013124  Afer_2034  single-stranded nucleic acid binding R3H domain protein  36.26 
 
 
281 aa  86.7  2e-16  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_3120  single-stranded nucleic acid binding R3H domain protein  34.09 
 
 
173 aa  85.9  3e-16  Eggerthella lenta DSM 2243  Bacteria  hitchhiker  0.000729653  hitchhiker  0.0000000587752 
 
 
-
 
NC_013170  Ccur_14170  predicted RNA-binding protein  30.39 
 
 
206 aa  85.1  5e-16  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_28510  predicted RNA-binding protein  37.41 
 
 
188 aa  82.4  0.000000000000003  Slackia heliotrinireducens DSM 20476  Bacteria  hitchhiker  0.00371448  hitchhiker  0.001116 
 
 
-
 
NC_013739  Cwoe_5946  single-stranded nucleic acid binding R3H domain protein  35.97 
 
 
155 aa  80.9  0.000000000000009  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_1037  single-stranded nucleic acid binding R3H domain-containing protein  34.06 
 
 
226 aa  80.9  0.00000000000001  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.220357  n/a   
 
 
-
 
NC_008532  STER_1788  DNA/RNA-binding protein  31.88 
 
 
349 aa  80.1  0.00000000000002  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.000347155  n/a   
 
 
-
 
NC_012034  Athe_2759  single-stranded nucleic acid binding R3H domain protein  33.74 
 
 
208 aa  78.6  0.00000000000005  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.000230158  n/a   
 
 
-
 
NC_009486  Tpet_1334  single-stranded nucleic acid binding R3H domain-containing protein  31.69 
 
 
221 aa  78.2  0.00000000000006  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.0000542188  n/a   
 
 
-
 
NC_010483  TRQ2_1352  single-stranded nucleic acid binding R3H domain-containing protein  31.69 
 
 
221 aa  78.2  0.00000000000006  Thermotoga sp. RQ2  Bacteria  normal  0.0197578  n/a   
 
 
-
 
NC_013411  GYMC61_3559  single-stranded nucleic acid binding R3H domain protein  31.06 
 
 
218 aa  78.2  0.00000000000006  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009012  Cthe_2366  single-stranded nucleic acid binding R3H  31.87 
 
 
206 aa  77.4  0.0000000000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET1039  SpoIIIJ-associated protein Jag, putative  35.1 
 
 
226 aa  76.6  0.0000000000002  Dehalococcoides ethenogenes 195  Bacteria  hitchhiker  0.00710769  n/a   
 
 
-
 
NC_004116  SAG0410  R3H domain-containing protein  30.43 
 
 
273 aa  76.3  0.0000000000002  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_909  RNA-binding protein  35.1 
 
 
226 aa  76.6  0.0000000000002  Dehalococcoides sp. VS  Bacteria  hitchhiker  0.00000072438  n/a   
 
 
-
 
NC_009455  DehaBAV1_0921  single-stranded nucleic acid binding R3H domain-containing protein  34.44 
 
 
226 aa  75.9  0.0000000000003  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.000101944  n/a   
 
 
-
 
NC_009972  Haur_0763  single-stranded nucleic acid binding R3H domain-containing protein  38.83 
 
 
240 aa  75.9  0.0000000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.238537  n/a   
 
 
-
 
NC_008554  Sfum_2598  single-stranded nucleic acid binding R3H domain-containing protein  31.97 
 
 
226 aa  75.1  0.0000000000005  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.434247  normal 
 
 
-
 
NC_013205  Aaci_2946  single-stranded nucleic acid binding R3H domain protein  35.81 
 
 
216 aa  73.9  0.000000000001  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.0000137296  n/a   
 
 
-
 
NC_008346  Swol_2573  single-stranded nucleic acid binding R3H  32.3 
 
 
209 aa  73.6  0.000000000002  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_0706  single-stranded nucleic acid binding R3H domain protein  33.09 
 
 
231 aa  73.6  0.000000000002  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  hitchhiker  0.0014097  n/a   
 
 
-
 
NC_009523  RoseRS_3964  single-stranded nucleic acid binding R3H domain-containing protein  37.61 
 
 
229 aa  73.2  0.000000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.731182  normal  0.0938919 
 
 
-
 
NC_009767  Rcas_1428  single-stranded nucleic acid binding R3H domain-containing protein  37.61 
 
 
229 aa  72.8  0.000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.436492  normal 
 
 
-
 
NC_014212  Mesil_1536  single-stranded nucleic acid binding R3H domain protein  33.33 
 
 
203 aa  72.8  0.000000000003  Meiothermus silvanus DSM 9946  Bacteria  normal  0.0116594  normal 
 
 
-
 
NC_013440  Hoch_6896  single-stranded nucleic acid binding R3H domain protein  33.1 
 
 
163 aa  72.8  0.000000000003  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_013203  Apar_1365  single-stranded nucleic acid binding R3H domain protein  33.86 
 
 
194 aa  72.4  0.000000000004  Atopobium parvulum DSM 20469  Bacteria  normal  0.856474  normal 
 
 
-
 
NC_011831  Cagg_1197  single-stranded nucleic acid binding R3H domain protein  40 
 
 
221 aa  72  0.000000000005  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.0000457064  hitchhiker  0.000925706 
 
 
-
 
NC_013525  Tter_1423  single-stranded nucleic acid binding R3H domain protein  35.48 
 
 
251 aa  70.5  0.00000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009513  Lreu_1941  single-stranded nucleic acid binding R3H domain-containing protein  30.15 
 
 
255 aa  70.1  0.00000000002  Lactobacillus reuteri DSM 20016  Bacteria  decreased coverage  0.0000134575  n/a   
 
 
-
 
NC_009943  Dole_0103  single-stranded nucleic acid binding R3H domain-containing protein  32.67 
 
 
341 aa  68.9  0.00000000004  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011728  BbuZS7_0449  spoiiij-associtated protein  36.19 
 
 
242 aa  68.6  0.00000000006  Borrelia burgdorferi ZS7  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3436  single-stranded nucleic acid binding R3H  33.64 
 
 
172 aa  67.4  0.0000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.948482  normal 
 
 
-
 
NC_013517  Sterm_4134  single-stranded nucleic acid binding R3H domain protein  31.9 
 
 
274 aa  67.4  0.0000000001  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.780403  n/a   
 
 
-
 
NC_013515  Smon_0096  single-stranded nucleic acid binding R3H domain protein  28.57 
 
 
245 aa  66.6  0.0000000002  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_009616  Tmel_1632  single-stranded nucleic acid binding R3H domain-containing protein  29.56 
 
 
223 aa  65.9  0.0000000003  Thermosipho melanesiensis BI429  Bacteria  normal  0.694857  n/a   
 
 
-
 
NC_007604  Synpcc7942_1618  single-stranded nucleic acid binding R3H  33.59 
 
 
168 aa  65.1  0.0000000005  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.122572 
 
 
-
 
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