Gene HMPREF0424_0050 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0050 
Symbol 
ID8709290 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp58036 
End bp58590 
Gene Length555 bp 
Protein Length184 aa 
Translation table11 
GC content42% 
IMG OID646482173 
ProductR3H domain protein 
Protein accessionYP_003373321 
Protein GI283782567 
COG category[R] General function prediction only 
COG ID[COG1847] Predicted RNA-binding protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTACAAG ATGAGAAGAG GACGGTTGAT CAACTCAATG AAGAAGCTGA TATTGCCGCA 
GATTATTTAG AAGGCTTACT CGATATTGCT GATTATGAGG GTGATATTGA GATGGGTGTG 
CGCAATAATC GCCCAATGAT TCAGATTGTT GCAGATGATG ACACTGATAT TAAGAATTTA 
ATTGGTCGCA ATGGTGAGGT TGTCGATGCC TTGCAGCAAT TGAGTCGTCT TGCTGTTCAA 
CAAAAAACTG GTGATCGTTC GCATCTTATA GTTGATGTAG ATGGATTCTT AAAGCGTAAG 
CGCCAGCATT TGCGCGATAT TGCGTTAGAT GCTGTTGATG AGGTGCGTGA AACTGGTGAA 
CCTGTGAATT TGAAGCCAAT GAATTCTTTT GAGCGTAAAG TTGTGCATGA TACTGTACGT 
GATGAAGGTT TGCGCTCCCG TTCACATGGG GAAGAACCAC GCCGCTATGT AACTGTTTAC 
ATGCCTTCAG TTGCTTCTGA AGATGAGAAT ATTGATGAAA TTGACGATGT AGAAGGCGAA 
TATTCTGAAG AATAA
 
Protein sequence
MVQDEKRTVD QLNEEADIAA DYLEGLLDIA DYEGDIEMGV RNNRPMIQIV ADDDTDIKNL 
IGRNGEVVDA LQQLSRLAVQ QKTGDRSHLI VDVDGFLKRK RQHLRDIALD AVDEVRETGE 
PVNLKPMNSF ERKVVHDTVR DEGLRSRSHG EEPRRYVTVY MPSVASEDEN IDEIDDVEGE 
YSEE