Gene Shel_28510 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_28510 
Symbol 
ID8396739 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp3161357 
End bp3161923 
Gene Length567 bp 
Protein Length188 aa 
Translation table11 
GC content56% 
IMG OID644987589 
Productpredicted RNA-binding protein 
Protein accessionYP_003145186 
Protein GI257065514 
COG category[R] General function prediction only 
COG ID[COG1847] Predicted RNA-binding protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00371448 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.001116 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCTGAAG AAGATATCAT CGAAGCGCCT GAAGAGATTG AGGACGACAT GGAGGTCGTC 
GAAGACGCTA AGCCAAGTTA CGGCAATCAG GTCGAACTGA CCGAGGAAGA ACTCGACCAT
GTGGCAGATG TCGCCATCGA TGCCTTGCAG GGCATCTTGA AATACTTCGA TGTGGGCGAA
GTTACCATCG ACGAGTACGA AGGCGACGAG CGTGAGCTGA TCCTGGATAT CACCGGAGAC
AACTTGGCTA TCCTGATTGG CCGCCATGGC AAGACTCTGG ATGCTCTGCA GTTCATCATT
TCCGCCATCA CTACCCGCGA ACTCGGTTTC CGTTATCCCG TGGTGGTAGA CGTCGAAGGC
TATAAGAACC GTCAGCGTCA GAAGCTTGAG GGCGTGGCCC GTGCTTCGGC CAACCGTGCA
GCTTCCCAAG GCAAGGTTGT GAAGCTGCGT CCTATGACCC CGTATGAGCG CCGCATCGTC
CATATTGCGC TCCGCAACGA CAGCCGTGTG GAAACCGCCT CCGAAGGTGA AGGAAGCGCT
CGCCACGTTG TGGTCATCCC TCAGTAA
 
Protein sequence
MSEEDIIEAP EEIEDDMEVV EDAKPSYGNQ VELTEEELDH VADVAIDALQ GILKYFDVGE 
VTIDEYEGDE RELILDITGD NLAILIGRHG KTLDALQFII SAITTRELGF RYPVVVDVEG
YKNRQRQKLE GVARASANRA ASQGKVVKLR PMTPYERRIV HIALRNDSRV ETASEGEGSA
RHVVVIPQ