108 homologs were found in PanDaTox collection
for query gene Msil_3328 on replicon NC_011666
Organism: Methylocella silvestris BL2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011666  Msil_3328  formate dehydrogenase accessory protein FdhE  100 
 
 
309 aa  619  1e-176  Methylocella silvestris BL2  Bacteria  n/a    normal  0.518348 
 
 
-
 
NC_007298  Daro_1815  formate dehydrogenase accessory protein  44.91 
 
 
302 aa  221  9.999999999999999e-57  Dechloromonas aromatica RCB  Bacteria  normal  0.608787  normal  0.064168 
 
 
-
 
NC_011662  Tmz1t_3590  formate dehydrogenase accessory protein FdhE  41.4 
 
 
303 aa  209  7e-53  Thauera sp. MZ1T  Bacteria  normal  0.510238  n/a   
 
 
-
 
NC_010086  Bmul_4594  formate dehydrogenase accessory protein FdhE  42.61 
 
 
316 aa  202  4e-51  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0729287  normal  0.966332 
 
 
-
 
NC_009720  Xaut_0659  formate dehydrogenase accessory protein FdhE  41.48 
 
 
317 aa  202  8e-51  Xanthobacter autotrophicus Py2  Bacteria  normal  0.0343732  normal 
 
 
-
 
NC_008391  Bamb_3380  formate dehydrogenase accessory protein FdhE  42.05 
 
 
338 aa  200  3e-50  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B2097  formate dehydrogenase accessory protein  42.05 
 
 
316 aa  199  5e-50  Burkholderia sp. 383  Bacteria  normal  0.162147  normal 
 
 
-
 
NC_010552  BamMC406_3882  formate dehydrogenase accessory protein FdhE  42.05 
 
 
311 aa  198  7.999999999999999e-50  Burkholderia ambifaria MC40-6  Bacteria  normal  0.884672  normal 
 
 
-
 
NC_007435  BURPS1710b_A0727  formate dehydrogenase accessory protein FdhE  43.84 
 
 
322 aa  197  2.0000000000000003e-49  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1680  formate dehydrogenase accessory protein  43.84 
 
 
322 aa  196  3e-49  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1695  formate dehydrogenase accessory protein  43.84 
 
 
322 aa  196  3e-49  Burkholderia mallei SAVP1  Bacteria  normal  0.672608  n/a   
 
 
-
 
NC_008835  BMA10229_1902  formate dehydrogenase accessory protein  43.84 
 
 
322 aa  196  3e-49  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2393  formate dehydrogenase accessory protein FdhE  43.84 
 
 
322 aa  196  3e-49  Burkholderia pseudomallei 668  Bacteria  normal  0.0413827  n/a   
 
 
-
 
NC_009079  BMA10247_A0574  formate dehydrogenase accessory protein  43.84 
 
 
322 aa  196  3e-49  Burkholderia mallei NCTC 10247  Bacteria  normal  0.893619  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2256  formate dehydrogenase accessory protein FdhE  43.48 
 
 
322 aa  196  5.000000000000001e-49  Burkholderia pseudomallei 1106a  Bacteria  normal  0.308302  n/a   
 
 
-
 
NC_007650  BTH_II0710  formate dehydrogenase accessory protein FdhE  42.03 
 
 
320 aa  187  3e-46  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_4521  formate dehydrogenase accessory protein FdhE  39.24 
 
 
310 aa  186  3e-46  Burkholderia phymatum STM815  Bacteria  normal  0.269585  normal 
 
 
-
 
NC_010515  Bcenmc03_3541  formate dehydrogenase accessory protein FdhE  40.53 
 
 
311 aa  180  2.9999999999999997e-44  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0540431  normal 
 
 
-
 
NC_008543  Bcen2424_3987  formate dehydrogenase accessory protein FdhE  40.53 
 
 
316 aa  179  4e-44  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4379  formate dehydrogenase accessory protein FdhE  40.15 
 
 
316 aa  179  7e-44  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.855008  n/a   
 
 
-
 
NC_009668  Oant_2866  formate dehydrogenase accessory protein FdhE  34.98 
 
 
303 aa  175  9e-43  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0914212  n/a   
 
 
-
 
NC_012880  Dd703_2515  formate dehydrogenase accessory protein FdhE  35.93 
 
 
309 aa  174  1.9999999999999998e-42  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3487  formate dehydrogenase accessory protein FdhE  38.11 
 
 
324 aa  171  1e-41  Delftia acidovorans SPH-1  Bacteria  normal  0.18777  normal 
 
 
-
 
NC_010676  Bphyt_6557  formate dehydrogenase accessory protein FdhE  36.49 
 
 
331 aa  166  6.9999999999999995e-40  Burkholderia phytofirmans PsJN  Bacteria  normal  0.232874  decreased coverage  0.000781967 
 
 
-
 
NC_011080  SNSL254_A4314  formate dehydrogenase accessory protein FdhE  35.21 
 
 
309 aa  164  2.0000000000000002e-39  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C4360  formate dehydrogenase accessory protein FdhE  35.21 
 
 
309 aa  164  2.0000000000000002e-39  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.382122  normal 
 
 
-
 
NC_011094  SeSA_A4247  formate dehydrogenase accessory protein FdhE  35.21 
 
 
309 aa  164  2.0000000000000002e-39  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B4269  formate dehydrogenase accessory protein FdhE  35.21 
 
 
309 aa  164  2.0000000000000002e-39  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_4088  formate dehydrogenase accessory protein FdhE  35.56 
 
 
309 aa  164  3e-39  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
CP001637  EcDH1_4093  formate dehydrogenase accessory protein FdhE  34.86 
 
 
309 aa  163  4.0000000000000004e-39  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2550  formate dehydrogenase accessory protein  35.84 
 
 
331 aa  163  4.0000000000000004e-39  Burkholderia xenovorans LB400  Bacteria  normal  0.469755  normal  0.436108 
 
 
-
 
NC_010498  EcSMS35_4277  formate dehydrogenase accessory protein FdhE  34.86 
 
 
309 aa  163  4.0000000000000004e-39  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03776  formate dehydrogenase accessory protein FdhE  34.86 
 
 
309 aa  162  6e-39  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A4119  formate dehydrogenase accessory protein FdhE  34.86 
 
 
309 aa  162  6e-39  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_4127  formate dehydrogenase accessory protein FdhE  34.86 
 
 
309 aa  162  6e-39  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_03725  hypothetical protein  34.86 
 
 
309 aa  162  6e-39  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4420  formate dehydrogenase accessory protein FdhE  34.86 
 
 
309 aa  161  1e-38  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E4370  formate dehydrogenase accessory protein FdhE  34.86 
 
 
309 aa  161  1e-38  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_5341  formate dehydrogenase accessory protein FdhE  34.86 
 
 
309 aa  161  1e-38  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.535086 
 
 
-
 
NC_012560  Avin_03840  formate dehydrogenase accessory protein FdhE  41.5 
 
 
304 aa  162  1e-38  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2743  formate dehydrogenase accessory protein FdhE  35.02 
 
 
309 aa  161  1e-38  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_0087  formate dehydrogenase accessory protein FdhE  36.36 
 
 
309 aa  159  5e-38  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_1525  formate dehydrogenase accessory protein FdhE  34.01 
 
 
309 aa  159  5e-38  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A4425  formate dehydrogenase accessory protein FdhE  34.86 
 
 
309 aa  159  7e-38  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.248516  normal 
 
 
-
 
NC_012912  Dd1591_1432  formate dehydrogenase accessory protein FdhE  36.27 
 
 
311 aa  159  7e-38  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_4116  formate dehydrogenase accessory protein FdhE  34.27 
 
 
309 aa  157  2e-37  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3767  formate dehydrogenase accessory protein FdhE  34.27 
 
 
309 aa  157  2e-37  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_0041  formate dehydrogenase accessory protein FdhE  34.27 
 
 
309 aa  157  2e-37  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_1089  formate dehydrogenase accessory protein FdhE  36.55 
 
 
331 aa  154  1e-36  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.75102  normal 
 
 
-
 
NC_008686  Pden_2826  formate dehydrogenase accessory protein FdhE  36.95 
 
 
302 aa  150  4e-35  Paracoccus denitrificans PD1222  Bacteria  normal  0.366284  normal  0.421653 
 
 
-
 
NC_009656  PSPA7_5528  formate dehydrogenase accessory protein FdhE  36.1 
 
 
309 aa  148  9e-35  Pseudomonas aeruginosa PA7  Bacteria  normal  0.788402  n/a   
 
 
-
 
NC_008463  PA14_63550  formate dehydrogenase accessory protein FdhE  35.74 
 
 
309 aa  147  2.0000000000000003e-34  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0301804  normal 
 
 
-
 
NC_010501  PputW619_0547  formate dehydrogenase accessory protein FdhE  34.38 
 
 
316 aa  143  4e-33  Pseudomonas putida W619  Bacteria  normal  normal  0.178181 
 
 
-
 
NC_007492  Pfl01_2701  formate dehydrogenase accessory protein  35.55 
 
 
308 aa  141  9.999999999999999e-33  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.985354  normal  0.113701 
 
 
-
 
NC_009675  Anae109_2011  formate dehydrogenase accessory protein FdhE  37.68 
 
 
288 aa  137  2e-31  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.716423  normal 
 
 
-
 
NC_002947  PP_0492  formate dehydrogenase accessory protein FdhE  35.25 
 
 
318 aa  135  9e-31  Pseudomonas putida KT2440  Bacteria  normal  normal  0.379246 
 
 
-
 
NC_009512  Pput_0526  formate dehydrogenase accessory protein FdhE  35.25 
 
 
308 aa  135  9.999999999999999e-31  Pseudomonas putida F1  Bacteria  normal  normal  0.963128 
 
 
-
 
NC_010322  PputGB1_0535  formate dehydrogenase accessory protein FdhE  34.03 
 
 
306 aa  135  9.999999999999999e-31  Pseudomonas putida GB-1  Bacteria  normal  normal  0.849545 
 
 
-
 
NC_008577  Shewana3_2092  formate dehydrogenase accessory protein FdhE  31.94 
 
 
299 aa  130  4.0000000000000003e-29  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.00039183 
 
 
-
 
NC_009901  Spea_0441  formate dehydrogenase accessory protein FdhE  31.67 
 
 
323 aa  129  6e-29  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_0104  fdhE protein  31.35 
 
 
302 aa  120  1.9999999999999998e-26  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_0105  formate dehydrogenase accessory protein FdhE  31.02 
 
 
302 aa  118  1.9999999999999998e-25  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_0100  formate dehydrogenase accessory protein FdhE  31.02 
 
 
302 aa  118  1.9999999999999998e-25  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_0105  formate dehydrogenase accessory protein FdhE  31.02 
 
 
302 aa  118  1.9999999999999998e-25  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0108  formate dehydrogenase accessory protein FdhE  29.47 
 
 
301 aa  114  1.0000000000000001e-24  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0103  formate dehydrogenase accessory protein FdhE  29.51 
 
 
301 aa  113  4.0000000000000004e-24  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0107  formate dehydrogenase accessory protein FdhE  29.51 
 
 
301 aa  113  4.0000000000000004e-24  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_3264  formate dehydrogenase accessory protein FdhE  43.21 
 
 
327 aa  103  3e-21  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.466325  normal 
 
 
-
 
NC_011891  A2cp1_3897  formate dehydrogenase accessory protein FdhE  36.99 
 
 
284 aa  98.2  1e-19  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3813  formate dehydrogenase accessory protein FdhE  36.3 
 
 
284 aa  95.1  1e-18  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0796  hypothetical protein  24.25 
 
 
275 aa  73.9  0.000000000003  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.230718  n/a   
 
 
-
 
NC_007760  Adeh_3757  formate dehydrogenase accessory protein FdhE  38.71 
 
 
284 aa  72.8  0.000000000006  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.60854  n/a   
 
 
-
 
NC_007519  Dde_0706  formate dehydrogenase formation protein FdhE, putative  38.6 
 
 
293 aa  72  0.00000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0279  formate dehydrogenase accessory protein  31.9 
 
 
294 aa  68.9  0.00000000009  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_2375  formate dehydrogenase formation protein FdhE, putative  34.21 
 
 
293 aa  66.6  0.0000000004  Desulfovibrio vulgaris DP4  Bacteria  normal  0.826547  normal 
 
 
-
 
NC_009943  Dole_1332  uncharacterized protein involved in formate dehydrogenase formation  33.33 
 
 
272 aa  66.6  0.0000000006  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1197  formate dehydrogenase accessory protein  31.03 
 
 
265 aa  65.5  0.000000001  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0871  hypothetical protein  31.78 
 
 
251 aa  63.5  0.000000004  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_3041  putative formate dehydrogenase formation protein  30.67 
 
 
286 aa  63.2  0.000000006  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.856963  normal 
 
 
-
 
NC_009253  Dred_1117  hypothetical protein  32.11 
 
 
269 aa  62.4  0.000000009  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1577  putative formate dehydrogenase formation protein  28.95 
 
 
282 aa  62  0.00000001  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.396578  n/a   
 
 
-
 
NC_011146  Gbem_1572  uncharacterized protein involved in formate dehydrogenase formation-like protein  32.73 
 
 
280 aa  62  0.00000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0645  formate dehydrogenase accessory protein  32.74 
 
 
337 aa  62  0.00000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.0493202 
 
 
-
 
NC_012918  GM21_2641  formate dehydrogenase accessory protein  32.74 
 
 
280 aa  62  0.00000001  Geobacter sp. M21  Bacteria  n/a    normal  0.0951215 
 
 
-
 
NC_013165  Shel_21810  uncharacterized protein involved in formate dehydrogenase formation  39.78 
 
 
304 aa  61.6  0.00000002  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal  0.218643 
 
 
-
 
NC_002936  DET0185  formate dehydrogenase accessory protein FdhE, putative  30.63 
 
 
282 aa  60.8  0.00000003  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1233  formate dehydrogenase accessory protein  31.58 
 
 
303 aa  60.1  0.00000004  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.0243277 
 
 
-
 
NC_013552  DhcVS_174  molybdopterin oxidoreductase, formate dehydrogenase accessory protein  29.73 
 
 
282 aa  60.1  0.00000005  Dehalococcoides sp. VS  Bacteria  hitchhiker  0.000105783  n/a   
 
 
-
 
NC_009455  DehaBAV1_0167  hypothetical protein  29.82 
 
 
282 aa  59.3  0.00000008  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.0000455155  n/a   
 
 
-
 
NC_007517  Gmet_1004  formate dehydrogenase formation protein FdhE, putative  31.86 
 
 
280 aa  58.9  0.00000009  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_3371  hypothetical protein  38.05 
 
 
281 aa  58.9  0.00000009  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_11250  uncharacterized protein involved in formate dehydrogenase formation  34.78 
 
 
305 aa  57.8  0.0000002  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.787821  normal  0.730398 
 
 
-
 
NC_013525  Tter_0608  formate dehydrogenase accessory protein  31.58 
 
 
289 aa  57.4  0.0000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008009  Acid345_0456  hypothetical protein  30.97 
 
 
282 aa  57  0.0000004  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.624877 
 
 
-
 
NC_008554  Sfum_1276  hypothetical protein  30.25 
 
 
300 aa  56.2  0.0000007  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.849487  normal 
 
 
-
 
NC_013173  Dbac_0982  formate dehydrogenase accessory protein  29.46 
 
 
294 aa  56.2  0.0000007  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_2086  putative formate dehydrogenase formation protein  31.82 
 
 
276 aa  54.3  0.000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1791  putative formate dehydrogenase formation protein  31.82 
 
 
276 aa  54.3  0.000002  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_1870  formate dehydrogenase accessory protein  31.82 
 
 
276 aa  54.3  0.000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.45516  n/a   
 
 
-
 
NC_008346  Swol_1822  putative formate dehydrogenase formation protein FdhE  31.73 
 
 
256 aa  51.6  0.00002  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
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