| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2092 |
|---|
| Symbol | |
|---|
| ID | 4479500 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 2511326 |
|---|
| End bp | 2512225 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639726677 |
|---|
| Product | formate dehydrogenase accessory protein FdhE |
|---|
| Protein accession | YP_869728 |
|---|
| Protein GI | 117920536 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3058] Uncharacterized protein involved in formate dehydrogenase formation |
|---|
| TIGRFAM ID | [TIGR01562] formate dehydrogenase accessory protein FdhE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00039183 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATGG CCAGCGATAT CCCGTTAAGT TTTGTTGATA AATCCCCCTT AGCATTGAAA
CCGCTAAAAG CGGCAGATCC TGAGAAAATT TATCAACATA GAGCACGTCG TTTAGCCCAA
TTAGCGCAGG ATTCTCCGCT GGCGGATTAT CTTAAGCTTT GCCAAATCCT TGTGTCGACG
CAGCAAAAAC TGGCTGCAAC GGAAATGGGC CCAGCGCCAA AGATTGACCC TGAGGTGCCA
TATCCGTTGT CCCTAAGCCA AACTCAAACG GCTCAGGATT GGTTAAAAGC ATTGCAAGCA
TTGCTAACAA AATTGGTATC TCAAGTGCCC ACGCATTTAG TGCCTGTTCT ACAGGAGTTA
CAACAGCAGT CGCCAACTCA ATTGCTAGAG TGGGGCACTC AACTGAGGCA AGGGGAGTTT
AGTGCCGTGC CTGCGCAGTA CAGCCTATTT ATTTGGGCGG GATTGTCCTT GTATTGGTCA
CACTGGGCCC CCATGGTGAT TGCACGAATG GATGTGAATA AGGTTAAACA GTCTAGCCTT
TGCCCGGTGT GCGGCAGTCA TCCCGTCGCC AGCATGATTG TCGATGAGCC ACGGGAAGGG
CTGCGCTATC TGCATTGCAG TCTGTGTGAA AGCGAGTGGC ACTATGTGCG CGCCCATTGT
ACCTGCTGCG AGCAATCCCG GGAGATGTCA ATTTGGTCGT TTGATGACCA TAAGGCAGCC
GTGCGGATTG AGAGCTGCGA GGCGTGCAAG GGATACACTA AGATGTTGTT TACCAACCGT
TTGCCATTGT TAGATGCGGC AGCGGACGAT ATCGCATCGA TGGGATTGGA TGCCGAGCTC
AATGCAAAGG GCTATGGTGC CACAACGGTA AATCCACTGT TACTTGCACA TGAAGCCTAA
|
|---|
| Protein sequence | MKMASDIPLS FVDKSPLALK PLKAADPEKI YQHRARRLAQ LAQDSPLADY LKLCQILVST
QQKLAATEMG PAPKIDPEVP YPLSLSQTQT AQDWLKALQA LLTKLVSQVP THLVPVLQEL
QQQSPTQLLE WGTQLRQGEF SAVPAQYSLF IWAGLSLYWS HWAPMVIARM DVNKVKQSSL
CPVCGSHPVA SMIVDEPREG LRYLHCSLCE SEWHYVRAHC TCCEQSREMS IWSFDDHKAA
VRIESCEACK GYTKMLFTNR LPLLDAAADD IASMGLDAEL NAKGYGATTV NPLLLAHEA
|
|---|
| |