76 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Adeg_0015  CDS  NC_013385  16221  16880  +  660  hypothetical protein  YP_003238042  decreased coverage  0.0000000117096  n/a    Ammonifex degensii KC4  Bacteria 
 
 
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Adeg_0045  CDS  NC_013385  39324  40436  +  1113  outer membrane efflux protein  YP_003238071  decreased coverage  0.00077566  n/a    Ammonifex degensii KC4  Bacteria 
 
 
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Adeg_0046  CDS  NC_013385  40558  41961  +  1404  protein of unknown function UPF0236  YP_003238072  decreased coverage  0.00191865  n/a    Ammonifex degensii KC4  Bacteria 
 
 
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Adeg_0112  CDS  NC_013385  101816  103039  -  1224  sodium:dicarboxylate symporter  YP_003238137  decreased coverage  0.00000289227  n/a    Ammonifex degensii KC4  Bacteria 
 
 
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Adeg_0178  CDS  NC_013385  175080  175601  +  522  methylated-DNA/protein-cysteine methyltransferase  YP_003238200  decreased coverage  0.0000105952  n/a    Ammonifex degensii KC4  Bacteria 
 
 
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Adeg_0190  CDS  NC_013385  185773  186345  +  573  nicotinate (nicotinamide) nucleotide adenylyltransferase  YP_003238212  decreased coverage  0.000000136715  n/a    Ammonifex degensii KC4  Bacteria 
 
 
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Adeg_0191  CDS  NC_013385  186406  186669  +  264  RNP-1 like RNA-binding protein  YP_003238213  decreased coverage  0.00000794742  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0192  CDS  NC_013385  186787  187143  +  357  iojap-like protein  YP_003238214  decreased coverage  0.0000139024  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0211  CDS  NC_013385  210021  210449  +  429  50S ribosomal protein L13  YP_003238232  decreased coverage  0.0000131451  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0220    NC_013385  216767  217892  -  1126      decreased coverage  0.00000183549  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0235    NC_013385  234164  235568  +  1405      decreased coverage  0.0000339849  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0236  CDS  NC_013385  235683  236270  +  588  Resolvase domain protein  YP_003238255  decreased coverage  0.0000223632  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0273  CDS  NC_013385  269079  269249  -  171  hypothetical protein  YP_003238290  decreased coverage  0.0000000998469  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0327  CDS  NC_013385  323206  324798  +  1593  transposase, IS605 OrfB family  YP_003238340  decreased coverage  0.00373732  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0368    NC_013385  371998  372813  -  816      decreased coverage  0.0000914909  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0392  CDS  NC_013385  401187  402149  +  963  protein of unknown function DUF81  YP_003238395  decreased coverage  0.000026561  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0400  CDS  NC_013385  409962  411071  +  1110  PilT protein domain protein  YP_003238403  decreased coverage  0.00000234721  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0408  CDS  NC_013385  417177  417497  +  321  thiamineS protein  YP_003238411  decreased coverage  0.00000000185395  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0428  CDS  NC_013385  437940  438104  +  165  hypothetical protein  YP_003238431  decreased coverage  0.000000068891  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0429  CDS  NC_013385  438133  439719  -  1587  hypothetical protein  YP_003238432  decreased coverage  0.0000832319  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0435  CDS  NC_013385  447295  447537  +  243  transcription attenuation protein MtrB  YP_003238438  decreased coverage  0.000796315  n/a    Ammonifex degensii KC4  Bacteria 
 
 
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Adeg_0519    NC_013385  537634  537736  +  103      decreased coverage  0.000855576  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0520  CDS  NC_013385  537770  539365  +  1596  transposase, IS605 OrfB family  YP_003238519  decreased coverage  0.000180512  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0533  CDS  NC_013385  553119  553574  +  456  UspA domain protein  YP_003238532  decreased coverage  0.000000725599  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0548  CDS  NC_013385  568519  569625  +  1107  SufBD protein  YP_003238546  decreased coverage  0.000000312333  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0574  CDS  NC_013385  598874  599788  +  915  integrase family protein  YP_003238572  decreased coverage  0.0000000663621  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0635  CDS  NC_013385  654696  656726  +  2031  ferrous iron transport protein B  YP_003238633  decreased coverage  0.0000306814  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0723  CDS  NC_013385  737679  737996  +  318  hypothetical protein  YP_003238720  decreased coverage  0.00000262267  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0725  CDS  NC_013385  738178  739773  +  1596  transposase, IS605 OrfB family  YP_003238721  decreased coverage  0.000155555  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0744  CDS  NC_013385  755108  755797  +  690  Resolvase domain protein  YP_003238740  decreased coverage  0.000000124642  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0778  CDS  NC_013385  785620  786264  +  645  SAF domain protein  YP_003238771  decreased coverage  0.0000467873  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0824    NC_013385  835839  836498  +  660      decreased coverage  0.000124895  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0870  CDS  NC_013385  884365  885183  -  819  hypothetical protein  YP_003238859  decreased coverage  0.0000000135378  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0884  CDS  NC_013385  898291  899517  +  1227  aspartate kinase  YP_003238872  decreased coverage  0.00000337521  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0885  CDS  NC_013385  899621  900349  +  729  hypothetical protein  YP_003238873  decreased coverage  0.00000038146  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0887  CDS  NC_013385  900906  902438  +  1533  GMP synthase, large subunit  YP_003238875  decreased coverage  0.0000175854  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0918  CDS  NC_013385  937333  938508  -  1176  hypothetical protein  YP_003238904  decreased coverage  0.00435551  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0919  CDS  NC_013385  938637  939845  +  1209  molybdenum cofactor synthesis domain protein  YP_003238905  decreased coverage  0.00423779  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0950  CDS  NC_013385  963806  964711  +  906  Hsp33 protein  YP_003238936  decreased coverage  0.0000000811074  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0951  CDS  NC_013385  964775  965314  +  540  protein of unknown function DUF177  YP_003238937  decreased coverage  0.000000012525  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1069  CDS  NC_013385  1078695  1079927  +  1233  transposase, IS605 OrfB family  YP_003239046  decreased coverage  0.00000226138  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1070  CDS  NC_013385  1080741  1082081  +  1341  RNA-directed DNA polymerase (Reverse transcriptase)  YP_003239047  decreased coverage  0.00000276308  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1163  CDS  NC_013385  1179863  1181266  -  1404  protein of unknown function UPF0236  YP_003239130  decreased coverage  0.00489953  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1175  CDS  NC_013385  1194233  1195162  -  930  hypothetical protein  YP_003239139  decreased coverage  0.00374008  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1207  CDS  NC_013385  1223603  1224802  -  1200  sodium/hydrogen exchanger  YP_003239168  decreased coverage  0.000000156939  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1237  CDS  NC_013385  1248405  1249049  -  645  adenylate kinase  YP_003239198  decreased coverage  0.00000920741  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1282  CDS  NC_013385  1287355  1287756  -  402  protein of unknown function DUF322  YP_003239242  decreased coverage  0.0000000067785  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1283  CDS  NC_013385  1287830  1289176  -  1347  acetyl-CoA carboxylase, biotin carboxylase  YP_003239243  decreased coverage  0.00000730053  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1376  CDS  NC_013385  1379994  1380659  -  666  hypothetical protein  YP_003239328  decreased coverage  0.000000421618  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1377  CDS  NC_013385  1380817  1381848  +  1032  hypothetical protein  YP_003239329  decreased coverage  0.0000017541  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1440  CDS  NC_013385  1443738  1446362  -  2625  alanyl-tRNA synthetase  YP_003239390  decreased coverage  0.000329754  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1447  CDS  NC_013385  1452185  1453981  -  1797  Cl- channel voltage-gated family protein  YP_003239394  decreased coverage  0.0000054528  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1458  CDS  NC_013385  1464637  1465797  +  1161  sodium/hydrogen exchanger  YP_003239404  decreased coverage  0.000000246002  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1530  CDS  NC_013385  1521245  1521496  -  252  hypothetical protein  YP_003239475  decreased coverage  0.00000000100287  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1531  CDS  NC_013385  1521568  1525092  -  3525  DNA-directed RNA polymerase, beta' subunit  YP_003239476  decreased coverage  0.00270247  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1541  CDS  NC_013385  1535098  1535796  -  699  DNA repair protein RadC  YP_003239486  decreased coverage  0.00000897994  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1643  CDS  NC_013385  1627167  1629458  -  2292  copper amine oxidase domain protein  YP_003239586  decreased coverage  0.00153148  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1740    NC_013385  1733832  1734903  +  1072      decreased coverage  0.00000115615  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1793  CDS  NC_013385  1789638  1790462  -  825  beta-lactamase domain protein  YP_003239731  decreased coverage  0.000988324  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1824  CDS  NC_013385  1818285  1821122  -  2838  excinuclease ABC, A subunit  YP_003239760  decreased coverage  0.00152877  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1869  CDS  NC_013385  1868124  1869806  -  1683  transposase, IS605 OrfB family  YP_003239801  decreased coverage  0.0000405396  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1870    NC_013385  1869775  1870080  -  306      decreased coverage  0.00000125106  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1871  CDS  NC_013385  1870145  1871143  -  999  biotin/acetyl-CoA-carboxylase ligase  YP_003239802  decreased coverage  0.0000312804  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1892  CDS  NC_013385  1893951  1895360  -  1410  Nitrite reductase (cytochrome; ammonia-forming)  YP_003239822  decreased coverage  0.00000066915  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1906  CDS  NC_013385  1909424  1909837  -  414  transcriptional regulator, BadM/Rrf2 family  YP_003239836  decreased coverage  0.0000482606  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1913  CDS  NC_013385  1919555  1919746  +  192  hypothetical protein  YP_003239843  decreased coverage  0.000000915773  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1937  CDS  NC_013385  1941820  1942938  -  1119  arsenical-resistance protein  YP_003239867  decreased coverage  0.0000566056  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1993  CDS  NC_013385  1996188  1997591  +  1404  protein of unknown function UPF0236  YP_003239921  decreased coverage  0.000000779773  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_2138  CDS  NC_013385  2121101  2121388  -  288  ribosomal protein S6  YP_003240065  decreased coverage  0.000000043387  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_R0003  tRNA  NC_013385  103260  103334  -  75  tRNA-Val    decreased coverage  0.00000000579556  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_R0010  tRNA  NC_013385  417508  417584  +  77  tRNA-Met    decreased coverage  0.000000000563126  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_R0022  rRNA  NC_013385  674081  675648  +  1568  16S ribosomal RNA    decreased coverage  0.000353945  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_R0028  tRNA  NC_013385  902502  902577  +  76  tRNA-Thr    decreased coverage  0.0000000154592  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_R0029  tRNA  NC_013385  1080066  1080139  +  74  tRNA-Gln    decreased coverage  0.00000000392756  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_R0030  tRNA  NC_013385  1080145  1080220  +  76  tRNA-Glu    decreased coverage  0.00000000392756  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_R0034  tRNA  NC_013385  1249109  1249186  -  78  tRNA-Pro    decreased coverage  0.000000537169  n/a    Ammonifex degensii KC4  Bacteria 
 
 
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